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1
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SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0;
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2
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SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0;
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3
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SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='TRADITIONAL';
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4
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5
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CREATE SCHEMA IF NOT EXISTS `bien_web` DEFAULT CHARACTER SET latin1 ;
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6
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USE `bien_web` ;
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7
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8
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-- -----------------------------------------------------
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9
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-- Table `bien_web`.`datasource`
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10
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-- -----------------------------------------------------
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11
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CREATE TABLE IF NOT EXISTS `bien_web`.`datasource` (
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12
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`dataSourceID` INT(11) UNSIGNED NOT NULL AUTO_INCREMENT ,
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`dataSourceName` VARCHAR(100) NULL DEFAULT NULL ,
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14
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`aggregatorOrPrimary` VARCHAR(25) NULL DEFAULT NULL ,
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15
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`sourceType` VARCHAR(25) NULL DEFAULT NULL ,
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16
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`accessLevel` VARCHAR(50) NULL DEFAULT NULL ,
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17
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`accessConditions` VARCHAR(500) NULL DEFAULT NULL ,
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18
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`authorshipContactEmail` VARCHAR(150) NULL DEFAULT NULL ,
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19
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PRIMARY KEY (`dataSourceID`) ,
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20
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UNIQUE INDEX `dataSourceName` (`dataSourceName` ASC) ,
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21
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INDEX `aggregatorOrPrimary` (`aggregatorOrPrimary` ASC) ,
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22
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INDEX `sourceType` (`sourceType` ASC) ,
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23
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INDEX `accessLevel` (`accessLevel` ASC) )
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24
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ENGINE = MyISAM
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25
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DEFAULT CHARACTER SET = utf8;
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26
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27
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28
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-- -----------------------------------------------------
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29
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-- Table `bien_web`.`dataSourceNormalized`
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30
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-- -----------------------------------------------------
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31
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CREATE TABLE IF NOT EXISTS `bien_web`.`dataSourceNormalized` (
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32
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`dataSourceNormalizedID` INT(11) UNSIGNED NOT NULL AUTO_INCREMENT ,
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33
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`dataSourceID` INT(11) UNSIGNED NOT NULL ,
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34
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`dataSourceNameCorrected` VARCHAR(255) NOT NULL ,
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35
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`isHerbarium` INT(1) NOT NULL DEFAULT 0 ,
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36
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`isAggregator` INT(1) NOT NULL DEFAULT 0 ,
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PRIMARY KEY (`dataSourceNormalizedID`) ,
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38
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INDEX `dataSourceID` (`dataSourceID` ASC) ,
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39
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INDEX `dataSourceName` (`dataSourceNameCorrected` ASC) ,
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40
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INDEX `isHerbarium` (`isHerbarium` ASC) ,
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41
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INDEX `fk_dataSourceNameCorrected_datasource1` (`dataSourceID` ASC) ,
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42
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CONSTRAINT `fk_dataSourceNameCorrected_datasource1`
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43
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FOREIGN KEY (`dataSourceID` )
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44
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REFERENCES `bien_web`.`datasource` (`dataSourceID` )
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45
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ON DELETE NO ACTION
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46
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ON UPDATE NO ACTION)
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47
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ENGINE = InnoDB
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48
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AUTO_INCREMENT = 1578
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49
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DEFAULT CHARACTER SET = latin1;
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50
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51
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52
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-- -----------------------------------------------------
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53
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-- Table `bien_web`.`party`
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54
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-- -----------------------------------------------------
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55
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CREATE TABLE IF NOT EXISTS `bien_web`.`party` (
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56
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`partyID` INT(11) UNSIGNED NOT NULL AUTO_INCREMENT ,
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57
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`partyType` VARCHAR(20) NOT NULL DEFAULT 'person' COMMENT '\'person\',\'institution\'' ,
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58
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`partyFullName` VARCHAR(100) NOT NULL ,
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59
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`userName` VARCHAR(50) NULL DEFAULT NULL ,
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60
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`lastName` VARCHAR(50) NULL DEFAULT NULL ,
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61
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`firstName` VARCHAR(50) NULL DEFAULT NULL ,
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62
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`email` VARCHAR(150) NULL DEFAULT NULL ,
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63
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`primaryInstitution` VARCHAR(255) NULL DEFAULT NULL ,
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64
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`institutionName` VARCHAR(150) NULL DEFAULT NULL ,
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65
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`department` VARCHAR(150) NULL DEFAULT NULL ,
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66
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`address1` VARCHAR(150) NULL DEFAULT NULL ,
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67
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`address2` VARCHAR(150) NULL DEFAULT NULL ,
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68
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`city` VARCHAR(50) NULL DEFAULT NULL ,
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69
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`stateProvince` VARCHAR(50) NULL DEFAULT NULL ,
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70
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`postalCode` VARCHAR(25) NULL DEFAULT NULL ,
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71
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`country` VARCHAR(50) NULL DEFAULT NULL ,
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72
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`stateProvinceCode` VARCHAR(20) NULL DEFAULT NULL ,
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73
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PRIMARY KEY (`partyID`) ,
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74
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INDEX `partyType` (`partyType` ASC) ,
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75
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INDEX `lastName` (`lastName` ASC) ,
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76
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INDEX `firstName` (`firstName` ASC) ,
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77
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INDEX `fullName` (`partyFullName` ASC) ,
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78
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INDEX `institutionName` (`institutionName` ASC) ,
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79
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INDEX `country` (`country` ASC) )
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80
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ENGINE = MyISAM
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81
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DEFAULT CHARACTER SET = utf8;
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82
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83
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84
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-- -----------------------------------------------------
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85
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-- Table `bien_web`.`datasource_party`
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86
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-- -----------------------------------------------------
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87
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CREATE TABLE IF NOT EXISTS `bien_web`.`datasource_party` (
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88
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`datasourceNormalized_party_ID` INT(11) NOT NULL AUTO_INCREMENT ,
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89
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`dataSourceNormalizedID` INT(11) UNSIGNED NOT NULL ,
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90
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`partyID` INT(11) UNSIGNED NOT NULL ,
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91
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`userRole` VARCHAR(50) NULL DEFAULT NULL ,
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92
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`isPI` INT(1) NULL DEFAULT NULL ,
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93
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UNIQUE INDEX `user_datasource` (`partyID` ASC, `dataSourceNormalizedID` ASC) ,
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94
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INDEX `userRole` (`userRole` ASC) ,
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95
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INDEX `isPI` (`isPI` ASC) ,
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96
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INDEX `fk_datasource_party_party1` (`partyID` ASC) ,
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97
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INDEX `fk_datasource_party_dataSourceNormalized1` (`dataSourceNormalizedID` ASC) ,
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98
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PRIMARY KEY (`datasourceNormalized_party_ID`) ,
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99
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UNIQUE INDEX `datasourceNormalized_party_ID_UNIQUE` (`datasourceNormalized_party_ID` ASC) ,
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100
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CONSTRAINT `fk_datasource_party_party1`
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101
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FOREIGN KEY (`partyID` )
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102
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REFERENCES `bien_web`.`party` (`partyID` )
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103
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ON DELETE NO ACTION
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104
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ON UPDATE NO ACTION,
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105
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CONSTRAINT `fk_datasource_party_dataSourceNormalized1`
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106
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FOREIGN KEY (`dataSourceNormalizedID` )
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107
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REFERENCES `bien_web`.`dataSourceNormalized` (`dataSourceNormalizedID` )
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108
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ON DELETE NO ACTION
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109
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ON UPDATE NO ACTION)
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110
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ENGINE = MyISAM
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111
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DEFAULT CHARACTER SET = utf8;
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112
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113
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114
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-- -----------------------------------------------------
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115
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-- Table `bien_web`.`plot`
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116
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-- -----------------------------------------------------
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117
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CREATE TABLE IF NOT EXISTS `bien_web`.`plot` (
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118
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`plotID` INT(11) UNSIGNED NOT NULL COMMENT '=DBPlotID from bien2' ,
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119
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`dataSourceID` INT(11) UNSIGNED NULL DEFAULT NULL ,
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120
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`dataSourceName` VARCHAR(100) NULL DEFAULT NULL ,
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121
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`plotCode` VARCHAR(100) NULL DEFAULT NULL ,
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122
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`plotAreaHa` DOUBLE NULL DEFAULT NULL ,
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123
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`plotMinDbh` DECIMAL(5,1) NULL DEFAULT NULL ,
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124
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`plotMethod` VARCHAR(100) NULL DEFAULT NULL ,
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125
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`country` VARCHAR(50) NULL DEFAULT NULL ,
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126
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`stateProvince` VARCHAR(100) NULL DEFAULT NULL ,
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127
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`countyParish` VARCHAR(100) NULL DEFAULT NULL ,
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128
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`latitude` DECIMAL(10,5) NULL DEFAULT NULL ,
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129
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`longitude` DECIMAL(10,5) NULL DEFAULT NULL ,
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130
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`isValidLatLong` INT(1) NULL DEFAULT NULL ,
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131
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`isGeovalid` INT(1) NULL DEFAULT NULL ,
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132
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`elevation_m` DECIMAL(6,1) NULL DEFAULT NULL ,
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133
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`localityDescription` VARCHAR(500) NULL DEFAULT NULL ,
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134
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PRIMARY KEY (`plotID`) ,
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135
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INDEX `dataSourceName` (`dataSourceName` ASC) ,
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136
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INDEX `dataSourceID` (`dataSourceID` ASC) ,
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137
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INDEX `plotID` (`plotID` ASC) ,
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138
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INDEX `country` (`country` ASC) ,
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139
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INDEX `stateProvince` (`stateProvince` ASC) ,
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140
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INDEX `plotCode` (`plotCode` ASC) ,
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141
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INDEX `plotAreaHa` (`plotAreaHa` ASC) ,
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142
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INDEX `plotMinDbh` (`plotMinDbh` ASC) ,
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143
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INDEX `plotMethod` (`plotMethod` ASC) ,
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144
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INDEX `isValidLatLong` (`isValidLatLong` ASC) ,
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145
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INDEX `isGeovalid` (`isGeovalid` ASC) ,
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146
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INDEX `fk_plot_datasource1` (`dataSourceID` ASC) ,
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147
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CONSTRAINT `fk_plot_datasource1`
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148
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FOREIGN KEY (`dataSourceID` )
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149
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REFERENCES `bien_web`.`datasource` (`dataSourceID` )
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150
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ON DELETE NO ACTION
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151
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ON UPDATE NO ACTION)
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152
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ENGINE = MyISAM
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153
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DEFAULT CHARACTER SET = utf8;
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154
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155
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156
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-- -----------------------------------------------------
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157
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-- Table `bien_web`.`taxon`
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158
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-- -----------------------------------------------------
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159
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CREATE TABLE IF NOT EXISTS `bien_web`.`taxon` (
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160
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`taxonID` INT(10) UNSIGNED NOT NULL AUTO_INCREMENT ,
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161
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`parentTaxonID` INT(10) UNSIGNED NULL DEFAULT NULL ,
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162
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`taxon` VARCHAR(255) NOT NULL ,
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163
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`rank` VARCHAR(255) NULL DEFAULT NULL ,
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164
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`nameClass` VARCHAR(50) NULL DEFAULT NULL ,
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165
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`taxonAuthor` VARCHAR(255) NULL DEFAULT NULL ,
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166
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`family` VARCHAR(150) NULL DEFAULT NULL ,
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167
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`genus` VARCHAR(100) NULL DEFAULT NULL ,
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168
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`species` VARCHAR(100) NULL DEFAULT NULL ,
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169
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`leftIndex` INT(11) NULL DEFAULT NULL ,
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170
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`rightIndex` INT(11) NULL DEFAULT NULL ,
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171
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`isAccepted` INT(1) NULL DEFAULT NULL ,
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172
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`isHybrid` INT(10) UNSIGNED NOT NULL DEFAULT '0' ,
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173
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PRIMARY KEY (`taxonID`) ,
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174
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UNIQUE INDEX `leftIndex` (`leftIndex` ASC) ,
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175
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UNIQUE INDEX `rightIndex` (`rightIndex` ASC) ,
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176
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INDEX `taxon` (`taxon` ASC) ,
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177
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INDEX `taxonAuthor` (`taxonAuthor` ASC) ,
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178
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INDEX `rank` (`rank` ASC) ,
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179
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INDEX `nameClass` (`nameClass` ASC) ,
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180
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INDEX `family` (`family` ASC) ,
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181
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INDEX `genus` (`genus` ASC) ,
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182
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INDEX `species` (`species` ASC) ,
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183
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INDEX `isHybrid` (`isHybrid` ASC) ,
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184
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INDEX `parentTaxonID` (`parentTaxonID` ASC) )
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185
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ENGINE = MyISAM
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186
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DEFAULT CHARACTER SET = utf8;
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187
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188
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189
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-- -----------------------------------------------------
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190
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-- Table `bien_web`.`observation`
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191
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-- -----------------------------------------------------
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192
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CREATE TABLE IF NOT EXISTS `bien_web`.`observation` (
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193
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`observationID` INT(11) UNSIGNED NOT NULL AUTO_INCREMENT ,
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194
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`dataSourceID` INT(11) UNSIGNED NULL DEFAULT NULL ,
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195
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`dataSourceName` VARCHAR(100) NULL DEFAULT NULL ,
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196
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`dataSourceNamePrimary` VARCHAR(100) NULL DEFAULT NULL ,
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197
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`plotID` INT(11) UNSIGNED NULL DEFAULT NULL ,
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198
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`observationType` VARCHAR(10) NULL DEFAULT NULL COMMENT '=plot,specimen,trait)' ,
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199
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`bien2_taxonomyID` INT(11) UNSIGNED NULL DEFAULT NULL ,
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200
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`bien2_DBPlotID` INT(11) UNSIGNED NULL DEFAULT NULL ,
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201
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`bien2_ObservationID` INT(11) UNSIGNED NULL DEFAULT NULL ,
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202
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`bien2_OccurID` INT(11) UNSIGNED NULL DEFAULT NULL ,
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203
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`bien2_TraitObservationID` INT(11) UNSIGNED NULL DEFAULT NULL ,
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204
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`taxonAuthorityVerbatim` VARCHAR(255) NULL DEFAULT NULL ,
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205
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`higherPlantGroup` VARCHAR(25) NULL DEFAULT NULL ,
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206
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`taxonID` INT(10) UNSIGNED NULL ,
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207
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`family` VARCHAR(100) NULL DEFAULT NULL ,
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208
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`genus` VARCHAR(100) NULL DEFAULT NULL ,
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209
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`species` VARCHAR(150) NULL DEFAULT NULL ,
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210
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`taxon` VARCHAR(200) NULL DEFAULT NULL ,
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211
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`taxonAuthor` VARCHAR(255) NULL DEFAULT NULL ,
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212
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`taxonMorphospecies` VARCHAR(255) NULL DEFAULT NULL ,
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213
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`rank` VARCHAR(50) NULL DEFAULT NULL ,
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214
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`acceptance` VARCHAR(2) NULL DEFAULT NULL ,
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215
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`country` VARCHAR(50) NULL DEFAULT NULL ,
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216
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`stateProvince` VARCHAR(100) NULL DEFAULT NULL ,
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217
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`countyParish` VARCHAR(100) NULL DEFAULT NULL ,
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218
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`countryError` DOUBLE NULL DEFAULT NULL ,
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219
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`stateProvinceError` DOUBLE NULL DEFAULT NULL ,
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220
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`localityDescription` VARCHAR(500) NULL DEFAULT NULL ,
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221
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`collector` VARCHAR(150) NULL DEFAULT NULL ,
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222
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`collectionNumber` VARCHAR(50) NULL DEFAULT NULL ,
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223
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`identifiedBy` VARCHAR(150) NULL DEFAULT NULL ,
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224
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`observationDate` DATE NULL DEFAULT NULL ,
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225
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`plotCode` VARCHAR(100) NULL DEFAULT NULL ,
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226
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`plotAreaHa` DOUBLE NULL DEFAULT NULL ,
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227
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`plotMinDbh` DECIMAL(5,1) NULL DEFAULT NULL ,
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228
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`plotMethod` VARCHAR(100) NULL DEFAULT NULL ,
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229
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`latitude` DECIMAL(10,5) NULL DEFAULT NULL ,
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230
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`longitude` DECIMAL(10,5) NULL DEFAULT NULL ,
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231
|
`isValidLatLong` INT(1) NULL DEFAULT NULL ,
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232
|
`isGeovalid` INT(1) NULL DEFAULT NULL ,
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233
|
`isNewWorld` INT(1) NULL DEFAULT NULL ,
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234
|
`elevation_m` DECIMAL(6,1) NULL DEFAULT NULL ,
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235
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`isCultivated` INT(1) NULL DEFAULT '0' ,
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236
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`isCultivatedReason` VARCHAR(255) NULL DEFAULT NULL ,
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237
|
`abund` INT(11) NULL DEFAULT NULL ,
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238
|
`abund1` INT(11) NULL DEFAULT NULL ,
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239
|
`abund2.5` INT(11) NULL DEFAULT NULL ,
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240
|
`abund10` INT(11) NULL DEFAULT NULL ,
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241
|
`pctCover` DECIMAL(10,5) NULL DEFAULT NULL ,
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242
|
`traitName` VARCHAR(200) NULL DEFAULT NULL ,
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|
243
|
`traitValue` VARCHAR(100) NULL DEFAULT NULL ,
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|
244
|
`traitUnit` VARCHAR(100) NULL DEFAULT NULL ,
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245
|
`traitMethod` VARCHAR(255) NULL DEFAULT NULL ,
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|
246
|
PRIMARY KEY (`observationID`) ,
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247
|
INDEX `observationID` (`observationID` ASC) ,
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248
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INDEX `dataSourceID` (`dataSourceID` ASC) ,
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249
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INDEX `dataSourceName` (`dataSourceName` ASC) ,
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250
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INDEX `dataSourceNamePrimary` (`dataSourceNamePrimary` ASC) ,
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251
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INDEX `plotID` (`plotID` ASC) ,
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252
|
INDEX `observationType` (`observationType` ASC) ,
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253
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INDEX `bien2_taxonomyID` (`bien2_taxonomyID` ASC) ,
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254
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INDEX `bien2_DBPlotID` (`bien2_DBPlotID` ASC) ,
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255
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INDEX `bien2_ObservationID` (`bien2_ObservationID` ASC) ,
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256
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INDEX `bien2_OccurID` (`bien2_OccurID` ASC) ,
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257
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INDEX `taxonAuthorityVerbatim` (`taxonAuthorityVerbatim` ASC) ,
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258
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INDEX `higherPlantGroup` (`higherPlantGroup` ASC) ,
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259
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INDEX `family` (`family` ASC) ,
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260
|
INDEX `genus` (`genus` ASC) ,
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261
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INDEX `species` (`species` ASC) ,
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262
|
INDEX `taxon` (`taxon` ASC) ,
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263
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INDEX `taxonAuthor` (`taxonAuthor` ASC) ,
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264
|
INDEX `taxonMorphospecies` (`taxonMorphospecies` ASC) ,
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265
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INDEX `rank` (`rank` ASC) ,
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266
|
INDEX `acceptance` (`acceptance` ASC) ,
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267
|
INDEX `country` (`country` ASC) ,
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268
|
INDEX `stateProvince` (`stateProvince` ASC) ,
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|
269
|
INDEX `collector` (`collector` ASC) ,
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|
270
|
INDEX `identifiedBy` (`identifiedBy` ASC) ,
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|
271
|
INDEX `plotCode` (`plotCode` ASC) ,
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272
|
INDEX `plotAreaHa` (`plotAreaHa` ASC) ,
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|
273
|
INDEX `plotMinDbh` (`plotMinDbh` ASC) ,
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|
274
|
INDEX `plotMethod` (`plotMethod` ASC) ,
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|
275
|
INDEX `isValidLatLong` (`isValidLatLong` ASC) ,
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|
276
|
INDEX `isGeovalid` (`isGeovalid` ASC) ,
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|
277
|
INDEX `isNewWorld` (`isNewWorld` ASC) ,
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|
278
|
INDEX `isCultivated` (`isCultivated` ASC) ,
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|
279
|
INDEX `isCultivatedReason` (`isCultivatedReason` ASC) ,
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|
280
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INDEX `bien2_TraitObservationID` (`bien2_TraitObservationID` ASC) ,
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|
281
|
INDEX `traitName` (`traitName` ASC) ,
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|
282
|
INDEX `traitMethod` (`traitMethod` ASC) ,
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|
283
|
INDEX `traitUnit` (`traitUnit` ASC) ,
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|
284
|
INDEX `fk_observation_datasource` (`dataSourceID` ASC) ,
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|
285
|
INDEX `fk_observation_plot1` (`plotID` ASC) ,
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|
286
|
INDEX `fk_observation_taxon1` (`taxonID` ASC) ,
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|
287
|
CONSTRAINT `fk_observation_datasource`
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|
288
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FOREIGN KEY (`dataSourceID` )
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|
289
|
REFERENCES `bien_web`.`datasource` (`dataSourceID` )
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|
290
|
ON DELETE NO ACTION
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|
291
|
ON UPDATE NO ACTION,
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|
292
|
CONSTRAINT `fk_observation_plot1`
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|
293
|
FOREIGN KEY (`plotID` )
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|
294
|
REFERENCES `bien_web`.`plot` (`plotID` )
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|
295
|
ON DELETE NO ACTION
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|
296
|
ON UPDATE NO ACTION,
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|
297
|
CONSTRAINT `fk_observation_taxon1`
|
|
298
|
FOREIGN KEY (`taxonID` )
|
|
299
|
REFERENCES `bien_web`.`taxon` (`taxonID` )
|
|
300
|
ON DELETE NO ACTION
|
|
301
|
ON UPDATE NO ACTION)
|
|
302
|
ENGINE = MyISAM
|
|
303
|
AUTO_INCREMENT = 10052218
|
|
304
|
DEFAULT CHARACTER SET = utf8;
|
|
305
|
|
|
306
|
|
|
307
|
|
|
308
|
SET SQL_MODE=@OLD_SQL_MODE;
|
|
309
|
SET FOREIGN_KEY_CHECKS=@OLD_FOREIGN_KEY_CHECKS;
|
|
310
|
SET UNIQUE_CHECKS=@OLD_UNIQUE_CHECKS;
|
