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1
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-- phpMyAdmin SQL Dump
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-- version 2.11.3deb1ubuntu1.3
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-- http://www.phpmyadmin.net
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--
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-- Host: localhost
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-- Generation Time: Oct 13, 2011 at 10:41 AM
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-- Server version: 5.0.51
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-- PHP Version: 5.2.4-2ubuntu5.17
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SET SQL_MODE="NO_AUTO_VALUE_ON_ZERO";
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--
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-- Database: `bien2`
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--
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-- --------------------------------------------------------
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--
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-- Table structure for table `bien_genus_family`
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--
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CREATE TABLE IF NOT EXISTS `bien_genus_family` (
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`family` varchar(250) character set utf8 NOT NULL,
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`genus` varchar(150) character set utf8 collate utf8_bin default NULL,
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`tot_families` int(1) default NULL,
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KEY `genus` (`genus`),
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KEY `family` (`family`),
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KEY `tot_families` (`tot_families`)
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) ENGINE=MyISAM DEFAULT CHARSET=latin1;
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-- --------------------------------------------------------
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--
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-- Table structure for table `clade`
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--
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CREATE TABLE IF NOT EXISTS `clade` (
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`cladeID` int(11) unsigned NOT NULL,
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`parentCladeID` int(11) unsigned default NULL,
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`cladeNameStd` varchar(250) NOT NULL,
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`rank` varchar(50) default NULL,
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`isHybrid` int(1) unsigned NOT NULL,
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`family` varchar(100) default NULL,
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`leftIndex` int(11) unsigned default NULL,
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45
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`rightIndex` int(11) unsigned default NULL,
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`source` varchar(25) default NULL,
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`majorPlantGroup` varchar(45) default NULL,
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`embryophytes` varchar(45) default NULL,
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`vascularPlants` varchar(45) default NULL,
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`seedPlants` varchar(45) default NULL,
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`floweringPlants` varchar(45) default NULL,
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PRIMARY KEY USING BTREE (`cladeID`),
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KEY `nameStaging_isHybrid` (`isHybrid`),
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KEY `nameStaging_family` (`family`),
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KEY `nameStaging_leftIndex` (`leftIndex`),
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KEY `nameStaging_rightIndex` (`rightIndex`),
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KEY `idx_source` (`source`),
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KEY `nameStaging_rank` USING BTREE (`rank`),
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KEY `Index_majorPlantGroup` USING BTREE (`majorPlantGroup`),
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KEY `Index_embryophytes` USING BTREE (`embryophytes`),
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KEY `Index_seedPlants` USING BTREE (`seedPlants`),
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KEY `Index_vascularPlants` USING BTREE (`vascularPlants`),
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KEY `Index_floweringPlants` USING BTREE (`floweringPlants`),
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KEY `nameStaging_parentCladeID` USING BTREE (`parentCladeID`),
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KEY `nameStaging_cladeNameStd` USING BTREE (`cladeNameStd`)
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) ENGINE=MyISAM DEFAULT CHARSET=utf8;
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-- --------------------------------------------------------
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--
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-- Table structure for table `cladeName`
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--
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CREATE TABLE IF NOT EXISTS `cladeName` (
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`cladeNameID` int(11) NOT NULL auto_increment,
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`cladeID` int(10) unsigned NOT NULL,
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`cladeName` varchar(250) NOT NULL,
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`cladeNameUnique` varchar(300) default NULL,
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`nameStatus` varchar(50) default NULL,
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`source` varchar(45) default NULL,
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PRIMARY KEY USING BTREE (`cladeNameID`),
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KEY `idx_cladeID` USING BTREE (`cladeID`),
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KEY `Index_source` (`source`),
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KEY `idx_name` USING BTREE (`cladeName`),
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KEY `idx_nameStatus` USING BTREE (`nameStatus`)
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) ENGINE=MyISAM DEFAULT CHARSET=utf8 AUTO_INCREMENT=89884 ;
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-- --------------------------------------------------------
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--
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-- Table structure for table `DataSource`
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--
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CREATE TABLE IF NOT EXISTS `DataSource` (
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`DataSourceID` int(10) unsigned NOT NULL auto_increment,
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`DataSourceName` varchar(255) NOT NULL,
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`DataSourceType` varchar(255) NOT NULL,
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PRIMARY KEY (`DataSourceID`),
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KEY `DataSourceName` (`DataSourceName`),
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KEY `DataSourceType` (`DataSourceType`)
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) ENGINE=InnoDB DEFAULT CHARSET=utf8 COMMENT='Data sources for plots or specimens' AUTO_INCREMENT=30 ;
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-- --------------------------------------------------------
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--
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-- Table structure for table `geoIndividualObservation`
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--
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CREATE TABLE IF NOT EXISTS `geoIndividualObservation` (
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`ID` int(11) unsigned NOT NULL COMMENT 'Links 1:1 with DBPlotID',
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`countryISO` varchar(25) default NULL,
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`countryStd` varchar(150) default NULL,
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`isInCountry` int(1) default NULL,
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`countryDistError` double default NULL,
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`stateProvinceStd` varchar(150) default NULL,
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`isInStateProvince` int(1) default NULL,
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`stateProvinceDistError` double default NULL,
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`countyParishStd` varchar(150) default NULL,
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`isInCountyParish` int(1) default NULL,
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`countyParishDistError` double default NULL,
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`isValidLatLong` int(1) default NULL,
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`isCultivated` int(1) default '0',
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`isCultivatedReason` varchar(255) default NULL,
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PRIMARY KEY (`ID`),
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KEY `geoI_countryISO_NDX` (`countryISO`),
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KEY `geoI_countryStd_NDX` (`countryStd`),
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KEY `geoI_isInCountry_NDX` (`isInCountry`),
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KEY `geoI_countryDistError_NDX` (`countryDistError`),
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KEY `geoI_stateProvinceStd_NDX` (`stateProvinceStd`),
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KEY `geoI_isInStateProvince_NDX` (`isInStateProvince`),
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KEY `geoI_stateProvinceDistError_NDX` (`stateProvinceDistError`),
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KEY `geoI_countyParishStd_NDX` (`countyParishStd`),
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KEY `geoI_isInCountyParish_NDX` (`isInCountyParish`),
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KEY `geoI_countyParishDistError_NDX` (`countyParishDistError`),
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KEY `geoI_isValidLatLong_NDX` (`isValidLatLong`),
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KEY `geoI_isCultivated` (`isCultivated`),
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KEY `geoI_isCultivatedReason` (`isCultivatedReason`)
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) ENGINE=InnoDB DEFAULT CHARSET=utf8;
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-- --------------------------------------------------------
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--
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-- Table structure for table `geoPlotMetaDataDimension`
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--
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CREATE TABLE IF NOT EXISTS `geoPlotMetaDataDimension` (
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`ID` int(11) unsigned NOT NULL COMMENT 'Links 1:1 with DBPlotID',
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`countryISO` varchar(25) default NULL,
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`countryStd` varchar(150) default NULL,
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150
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`isInCountry` int(1) default NULL,
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`countryDistError` double default NULL,
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`stateProvinceStd` varchar(150) default NULL,
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`isInStateProvince` int(1) default NULL,
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`stateProvinceDistError` double default NULL,
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`countyParishStd` varchar(150) default NULL,
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`isInCountyParish` int(1) default NULL,
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`countyParishDistError` double default NULL,
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`isValidLatLong` int(1) default NULL,
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`isCultivated` int(1) default '0',
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`isCultivatedReason` varchar(255) default NULL,
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PRIMARY KEY (`ID`),
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KEY `geoP_countryISO_NDX` (`countryISO`),
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KEY `geoP_countryStd_NDX` (`countryStd`),
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KEY `geoP_isInCountry_NDX` (`isInCountry`),
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KEY `geoP_countryDistError_NDX` (`countryDistError`),
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KEY `geoP_stateProvinceStd_NDX` (`stateProvinceStd`),
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KEY `geoP_isInStateProvince_NDX` (`isInStateProvince`),
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KEY `geoP_stateProvinceDistError_NDX` (`stateProvinceDistError`),
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KEY `geoP_countyParishStd_NDX` (`countyParishStd`),
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KEY `geoP_isInCountyParish_NDX` (`isInCountyParish`),
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KEY `geoP_countyParishDistError_NDX` (`countyParishDistError`),
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KEY `geoP_isValidLatLong_NDX` (`isValidLatLong`),
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KEY `geoP_isCultivated` (`isCultivated`),
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KEY `geo_isCultivatedReason` (`isCultivatedReason`)
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) ENGINE=InnoDB DEFAULT CHARSET=utf8;
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-- --------------------------------------------------------
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--
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-- Table structure for table `IndividualObservation`
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--
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CREATE TABLE IF NOT EXISTS `IndividualObservation` (
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`ObservationID` int(11) NOT NULL auto_increment,
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`ObservationType` int(11) default NULL,
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`PlotTreeTag` varchar(32) collate utf8_bin default NULL,
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`DBPlotID` int(11) default NULL,
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`SpecimenCatalogNO` varchar(64) collate utf8_bin default NULL,
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`ObservationSpecimenID` int(11) default NULL,
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`LatestDateCollected` date default NULL,
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`DecimalLatitude` decimal(10,5) default NULL,
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`DecimalLongitude` decimal(10,5) default NULL,
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`NumberOfStems` int(11) default NULL,
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194
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`BasalDiameter` decimal(10,5) default NULL,
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`Height` decimal(10,5) default NULL,
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`TaxonomyID` int(11) NOT NULL,
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`RawTreeID` int(10) default NULL,
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`test` tinyint(3) unsigned NOT NULL default '0',
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PRIMARY KEY (`ObservationID`),
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KEY `RefPlotMetaDataDimension411` (`DBPlotID`),
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KEY `RefTaxonDimension381` (`TaxonomyID`),
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KEY `ObservationSpecimenID` (`ObservationSpecimenID`)
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) ENGINE=InnoDB DEFAULT CHARSET=utf8 COLLATE=utf8_bin AUTO_INCREMENT=22296066 ;
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-- --------------------------------------------------------
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--
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-- Table structure for table `IndividualObservationMeasurement`
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--
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CREATE TABLE IF NOT EXISTS `IndividualObservationMeasurement` (
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`ObservationID` int(11) NOT NULL,
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`StemNO` int(11) NOT NULL auto_increment,
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`ObservationNO` int(11) NOT NULL,
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`PrimaryStem` int(11) default NULL,
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216
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`DBH` decimal(10,5) default NULL,
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`HOM` decimal(10,5) default NULL,
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`test` tinyint(3) unsigned NOT NULL default '0',
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PRIMARY KEY (`ObservationID`,`StemNO`,`ObservationNO`),
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KEY `RefIndividualObservation11` (`ObservationID`)
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) ENGINE=MyISAM DEFAULT CHARSET=utf8 COLLATE=utf8_bin AUTO_INCREMENT=1 ;
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-- --------------------------------------------------------
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225
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--
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-- Table structure for table `ObservationSpecimen`
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--
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228
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229
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CREATE TABLE IF NOT EXISTS `ObservationSpecimen` (
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`ObservationSpecimenID` int(11) NOT NULL auto_increment,
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231
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`DBSourceID` int(11) NOT NULL,
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232
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`Continent` varchar(64) collate utf8_bin default NULL,
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233
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`Country` varchar(100) collate utf8_bin default NULL,
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234
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`StateProvince` varchar(64) collate utf8_bin default NULL,
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235
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`verbatimCountry` varchar(100) collate utf8_bin default NULL,
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`County` varchar(100) collate utf8_bin default NULL,
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237
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`Locality` varchar(1024) collate utf8_bin default NULL,
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`Collector` varchar(256) collate utf8_bin default NULL,
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`IdentifiedBy` varchar(128) collate utf8_bin default NULL,
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`IdentifiedDate` date default NULL,
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241
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`CoordinateUncertainty` decimal(10,5) default NULL,
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242
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`CoordinateUncertaintyUnits` varchar(10) collate utf8_bin default NULL,
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`VegetationCategory` varchar(32) collate utf8_bin default NULL,
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244
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`test` tinyint(3) unsigned NOT NULL,
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245
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`Cultivated` int(1) NOT NULL,
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246
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`CollectionNumber` varchar(24) collate utf8_bin default NULL,
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PRIMARY KEY (`ObservationSpecimenID`),
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KEY `RefSpecimenSourceData421` (`DBSourceID`),
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KEY `DBSourceID` (`DBSourceID`,`Continent`,`Country`,`StateProvince`,`County`,`Locality`(255),`Collector`(255),`IdentifiedBy`,`IdentifiedDate`,`CoordinateUncertainty`,`CoordinateUncertaintyUnits`,`VegetationCategory`)
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250
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) ENGINE=InnoDB DEFAULT CHARSET=utf8 COLLATE=utf8_bin AUTO_INCREMENT=8578890 ;
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-- --------------------------------------------------------
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253
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254
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--
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255
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-- Table structure for table `PlotAggregateFact`
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256
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--
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257
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258
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CREATE TABLE IF NOT EXISTS `PlotAggregateFact` (
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259
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`DBPlotID` int(11) NOT NULL,
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260
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`PlotTimeID` int(11) NOT NULL,
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261
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`TotalIndividuals` int(11) default NULL,
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262
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`TotalIndividualsAbove1cm` int(11) default NULL,
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263
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`TotalIndividualsAbove2.5cm` int(11) default NULL,
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264
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`TotalIndividualsAbove10cm` int(11) default NULL,
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265
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`PercentCover` decimal(10,5) default NULL,
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266
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`TaxonomyID` int(11) NOT NULL,
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267
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`del` int(1) unsigned default NULL,
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268
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`test` tinyint(3) unsigned NOT NULL default '0',
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269
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PRIMARY KEY (`DBPlotID`,`PlotTimeID`,`TaxonomyID`),
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270
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KEY `RefPlotMetaDataDimension61` (`DBPlotID`),
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KEY `RefPlotTimeDimension371` (`PlotTimeID`),
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KEY `RefTaxonDimension181` (`TaxonomyID`),
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KEY `DBPlotID_2` (`DBPlotID`,`PlotTimeID`,`TaxonomyID`),
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KEY `DBPlotID_3` (`DBPlotID`,`PlotTimeID`,`TaxonomyID`),
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KEY `DBPlotID_4` (`DBPlotID`,`PlotTimeID`,`TaxonomyID`)
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276
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) ENGINE=InnoDB DEFAULT CHARSET=utf8 COLLATE=utf8_bin;
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277
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278
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-- --------------------------------------------------------
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279
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280
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--
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281
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-- Table structure for table `PlotMetaDataDimension`
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282
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--
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283
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284
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CREATE TABLE IF NOT EXISTS `PlotMetaDataDimension` (
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285
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`DBPlotID` int(11) NOT NULL auto_increment,
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286
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`DBSourceName` varchar(64) collate utf8_bin default NULL,
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287
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`ContactName` varchar(32) collate utf8_bin default NULL,
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288
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`ContactEmail` varchar(32) collate utf8_bin default NULL,
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289
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`ContactTelephone` varchar(32) collate utf8_bin default NULL,
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290
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`Continent` varchar(64) collate utf8_bin default NULL,
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291
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`Country` varchar(32) collate utf8_bin default NULL,
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292
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`StateProvince` varchar(64) collate utf8_bin default NULL,
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293
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`verbatimCountry` varchar(64) collate utf8_bin default NULL,
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294
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`County` varchar(64) collate utf8_bin default NULL,
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295
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`Locality` varchar(256) collate utf8_bin default NULL,
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296
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`VegetationCategory` varchar(32) collate utf8_bin default NULL,
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297
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`PlotCD` bigint(32) default NULL,
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298
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`PlotName` varchar(32) collate utf8_bin default NULL,
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299
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`PlotCensusMethod` varchar(32) collate utf8_bin default NULL,
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300
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`PlotArea` varchar(10) collate utf8_bin default NULL,
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301
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`PlotAreaUnits` varchar(10) collate utf8_bin default NULL,
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302
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`PlotShape` varchar(32) collate utf8_bin default NULL,
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303
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`PlotDecimalLatitude` decimal(10,5) default NULL,
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304
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`PlotDecimalLongitude` decimal(10,5) default NULL,
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305
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`CoordinateUncertainty` decimal(10,5) default NULL,
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306
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`CoordinateUncertaintyUnits` varchar(10) collate utf8_bin default NULL,
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307
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`PlotReferenceX` decimal(10,5) default NULL,
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308
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`PlotReferenceY` decimal(10,5) default NULL,
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309
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`PlotMaxDBH` decimal(10,5) default NULL,
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310
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`PlotMinDBH` decimal(10,5) default NULL,
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311
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`test` tinyint(3) unsigned NOT NULL default '0',
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312
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PRIMARY KEY (`DBPlotID`),
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313
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KEY `DBSourceName` (`DBSourceName`),
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314
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KEY `PlotName_2` (`PlotName`,`DBSourceName`)
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315
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) ENGINE=InnoDB DEFAULT CHARSET=utf8 COLLATE=utf8_bin AUTO_INCREMENT=342877 ;
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316
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317
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-- --------------------------------------------------------
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318
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319
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--
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320
|
-- Table structure for table `PlotTimeDimension`
|
|
321
|
--
|
|
322
|
|
|
323
|
CREATE TABLE IF NOT EXISTS `PlotTimeDimension` (
|
|
324
|
`PlotTimeID` int(11) NOT NULL auto_increment,
|
|
325
|
`CensusID` int(11) default NULL,
|
|
326
|
`CensusName` varchar(32) collate utf8_bin default NULL,
|
|
327
|
`CensusStartDate` date default NULL,
|
|
328
|
`CensusEndDate` date default NULL,
|
|
329
|
`DBPlotID` int(11) NOT NULL,
|
|
330
|
`test` tinyint(3) unsigned NOT NULL default '0',
|
|
331
|
PRIMARY KEY (`PlotTimeID`),
|
|
332
|
KEY `Ref613` (`DBPlotID`),
|
|
333
|
KEY `CensusName_2` (`CensusName`,`DBPlotID`,`CensusID`),
|
|
334
|
KEY `CensusName_3` (`CensusName`,`DBPlotID`,`CensusID`),
|
|
335
|
KEY `CensusName_4` (`CensusName`,`DBPlotID`,`CensusID`),
|
|
336
|
KEY `CensusName_5` (`CensusName`,`CensusID`),
|
|
337
|
KEY `CensusName_6` (`CensusName`,`CensusID`),
|
|
338
|
KEY `CensusName_7` (`CensusName`,`DBPlotID`,`CensusID`),
|
|
339
|
KEY `CensusName_8` (`CensusName`,`DBPlotID`,`CensusID`)
|
|
340
|
) ENGINE=InnoDB DEFAULT CHARSET=utf8 COLLATE=utf8_bin AUTO_INCREMENT=341814 ;
|
|
341
|
|
|
342
|
-- --------------------------------------------------------
|
|
343
|
|
|
344
|
--
|
|
345
|
-- Table structure for table `SpecimenSourceData`
|
|
346
|
--
|
|
347
|
|
|
348
|
CREATE TABLE IF NOT EXISTS `SpecimenSourceData` (
|
|
349
|
`DBSourceID` int(11) NOT NULL auto_increment,
|
|
350
|
`DBSourceName` varchar(64) collate utf8_bin default NULL,
|
|
351
|
`ContactName` varchar(32) collate utf8_bin default NULL,
|
|
352
|
`ContactEmail` varchar(32) collate utf8_bin default NULL,
|
|
353
|
`ContactTelephone` varchar(32) collate utf8_bin default NULL,
|
|
354
|
`SpecimenInstitutionCD` varchar(128) collate utf8_bin default NULL,
|
|
355
|
`SpecimenCollectionCD` varchar(128) collate utf8_bin default NULL,
|
|
356
|
`test` tinyint(3) unsigned NOT NULL default '0',
|
|
357
|
PRIMARY KEY (`DBSourceID`),
|
|
358
|
KEY `DBSourceName` (`DBSourceName`),
|
|
359
|
KEY `SpecimenInstitutionCD` (`SpecimenInstitutionCD`,`SpecimenCollectionCD`,`DBSourceName`)
|
|
360
|
) ENGINE=InnoDB DEFAULT CHARSET=utf8 COLLATE=utf8_bin AUTO_INCREMENT=131797 ;
|
|
361
|
|
|
362
|
-- --------------------------------------------------------
|
|
363
|
|
|
364
|
--
|
|
365
|
-- Table structure for table `TaxonDataSource`
|
|
366
|
--
|
|
367
|
|
|
368
|
CREATE TABLE IF NOT EXISTS `TaxonDataSource` (
|
|
369
|
`TaxonDataSourceID` int(10) unsigned NOT NULL auto_increment,
|
|
370
|
`DataSourceID` int(10) unsigned NOT NULL,
|
|
371
|
`TaxonomyID` int(10) unsigned NOT NULL,
|
|
372
|
`TotalObservations` int(10) unsigned default NULL,
|
|
373
|
`GeoreferencedObservations` int(10) unsigned default NULL,
|
|
374
|
PRIMARY KEY (`TaxonDataSourceID`),
|
|
375
|
KEY `DataSourceID` (`DataSourceID`),
|
|
376
|
KEY `TaxonomyID` (`TaxonomyID`)
|
|
377
|
) ENGINE=InnoDB DEFAULT CHARSET=utf8 COMMENT='Links taxa to data sources in which they are used' AUTO_INCREMENT=731596 ;
|
|
378
|
|
|
379
|
-- --------------------------------------------------------
|
|
380
|
|
|
381
|
--
|
|
382
|
-- Table structure for table `TaxonDimension`
|
|
383
|
--
|
|
384
|
|
|
385
|
CREATE TABLE IF NOT EXISTS `TaxonDimension` (
|
|
386
|
`TaxonomyID` int(11) NOT NULL auto_increment,
|
|
387
|
`FamilyName` varchar(64) collate utf8_bin default NULL,
|
|
388
|
`GenusName` varchar(64) collate utf8_bin default NULL,
|
|
389
|
`SpecificEpithet` varchar(64) collate utf8_bin default NULL,
|
|
390
|
`InfraspecificEpithet` varchar(64) collate utf8_bin default NULL,
|
|
391
|
`InfraspecificRank` varchar(64) collate utf8_bin default NULL,
|
|
392
|
`Authority` varchar(128) collate utf8_bin default NULL,
|
|
393
|
`is_plotName` int(1) unsigned default '0',
|
|
394
|
`taxonAuthorityVerbatim` varchar(250) collate utf8_bin default NULL,
|
|
395
|
`taxonMatched` varchar(250) collate utf8_bin default NULL,
|
|
396
|
`taxonMatchedAuthority` varchar(250) collate utf8_bin default NULL,
|
|
397
|
`unmatchedTerms` varchar(250) collate utf8_bin default NULL,
|
|
398
|
`matchScore` decimal(3,2) default NULL,
|
|
399
|
`taxonMatchedAcceptance` varchar(1) collate utf8_bin default NULL,
|
|
400
|
`familyCorrected` varchar(50) collate utf8_bin default NULL,
|
|
401
|
`genusCorrected` varchar(150) collate utf8_bin default NULL,
|
|
402
|
`speciesCorrected` varchar(255) collate utf8_bin default NULL,
|
|
403
|
`taxonCorrected` varchar(250) collate utf8_bin default NULL,
|
|
404
|
`authorityCorrected` varchar(250) collate utf8_bin default NULL,
|
|
405
|
`taxonCorrectedTnrsID` int(10) unsigned default NULL,
|
|
406
|
`taxonCorrectedRank` varchar(25) collate utf8_bin default NULL,
|
|
407
|
`taxonCorrectedAcceptance` varchar(1) collate utf8_bin default NULL,
|
|
408
|
`morphospecies` varchar(250) collate utf8_bin default NULL,
|
|
409
|
`taxonMorphospecies` varchar(250) collate utf8_bin default NULL,
|
|
410
|
`is_scrubbed` int(1) unsigned NOT NULL default '0',
|
|
411
|
PRIMARY KEY (`TaxonomyID`),
|
|
412
|
KEY `FamilyName` (`FamilyName`),
|
|
413
|
KEY `GenusName` (`GenusName`),
|
|
414
|
KEY `SpecificEpithet` (`SpecificEpithet`),
|
|
415
|
KEY `InfraspecificRank` (`InfraspecificRank`),
|
|
416
|
KEY `FamilyName_2` (`FamilyName`,`GenusName`,`SpecificEpithet`,`InfraspecificEpithet`,`InfraspecificRank`,`Authority`),
|
|
417
|
KEY `InfraspecificEpithet` (`InfraspecificEpithet`),
|
|
418
|
KEY `taxonAuthorityVerbatim` (`taxonAuthorityVerbatim`),
|
|
419
|
KEY `taxonCorrected` (`taxonCorrected`),
|
|
420
|
KEY `taxonMorphospecies` (`taxonMorphospecies`),
|
|
421
|
KEY `is_scrubbed` (`is_scrubbed`),
|
|
422
|
KEY `TD_familyCorrected` (`familyCorrected`),
|
|
423
|
KEY `TD_taxonMatchedAcceptance` (`taxonMatchedAcceptance`),
|
|
424
|
KEY `TD_taxonCorrectedAcceptance` (`taxonCorrectedAcceptance`),
|
|
425
|
KEY `TD_taxonCorrectedRank` (`taxonCorrectedRank`),
|
|
426
|
KEY `taxonCorrectedTnrsID` (`taxonCorrectedTnrsID`),
|
|
427
|
KEY `TD_is_plotName` (`is_plotName`),
|
|
428
|
KEY `genusCorrected_idx` (`genusCorrected`),
|
|
429
|
KEY `speciesCorrected` (`speciesCorrected`)
|
|
430
|
) ENGINE=InnoDB DEFAULT CHARSET=utf8 COLLATE=utf8_bin ROW_FORMAT=FIXED AUTO_INCREMENT=987490 ;
|
|
431
|
|
|
432
|
-- --------------------------------------------------------
|
|
433
|
|
|
434
|
--
|
|
435
|
-- Table structure for table `TaxonDimension_bak`
|
|
436
|
--
|
|
437
|
|
|
438
|
CREATE TABLE IF NOT EXISTS `TaxonDimension_bak` (
|
|
439
|
`TaxonomyID` int(11) NOT NULL auto_increment,
|
|
440
|
`FamilyName` varchar(64) collate utf8_bin default NULL,
|
|
441
|
`GenusName` varchar(64) collate utf8_bin default NULL,
|
|
442
|
`SpecificEpithet` varchar(64) collate utf8_bin default NULL,
|
|
443
|
`InfraspecificEpithet` varchar(64) collate utf8_bin default NULL,
|
|
444
|
`InfraspecificRank` varchar(64) collate utf8_bin default NULL,
|
|
445
|
`Authority` varchar(128) collate utf8_bin default NULL,
|
|
446
|
`is_plotName` int(1) unsigned default '0',
|
|
447
|
`taxonAuthorityVerbatim` varchar(250) collate utf8_bin default NULL,
|
|
448
|
`taxonMatched` varchar(250) collate utf8_bin default NULL,
|
|
449
|
`taxonMatchedAuthority` varchar(250) collate utf8_bin default NULL,
|
|
450
|
`unmatchedTerms` varchar(250) collate utf8_bin default NULL,
|
|
451
|
`matchScore` decimal(3,2) default NULL,
|
|
452
|
`taxonMatchedAcceptance` varchar(1) collate utf8_bin default NULL,
|
|
453
|
`familyCorrected` varchar(50) collate utf8_bin default NULL,
|
|
454
|
`genusCorrected` varchar(150) collate utf8_bin default NULL,
|
|
455
|
`speciesCorrected` varchar(255) collate utf8_bin default NULL,
|
|
456
|
`taxonCorrected` varchar(250) collate utf8_bin default NULL,
|
|
457
|
`authorityCorrected` varchar(250) collate utf8_bin default NULL,
|
|
458
|
`taxonCorrectedTnrsID` int(10) unsigned default NULL,
|
|
459
|
`taxonCorrectedRank` varchar(25) collate utf8_bin default NULL,
|
|
460
|
`taxonCorrectedAcceptance` varchar(1) collate utf8_bin default NULL,
|
|
461
|
`morphospecies` varchar(250) collate utf8_bin default NULL,
|
|
462
|
`taxonMorphospecies` varchar(250) collate utf8_bin default NULL,
|
|
463
|
`is_scrubbed` int(1) unsigned NOT NULL default '0',
|
|
464
|
PRIMARY KEY (`TaxonomyID`),
|
|
465
|
KEY `FamilyName` (`FamilyName`),
|
|
466
|
KEY `GenusName` (`GenusName`),
|
|
467
|
KEY `SpecificEpithet` (`SpecificEpithet`),
|
|
468
|
KEY `InfraspecificRank` (`InfraspecificRank`),
|
|
469
|
KEY `FamilyName_2` (`FamilyName`,`GenusName`,`SpecificEpithet`,`InfraspecificEpithet`,`InfraspecificRank`,`Authority`),
|
|
470
|
KEY `InfraspecificEpithet` (`InfraspecificEpithet`),
|
|
471
|
KEY `taxonAuthorityVerbatim` (`taxonAuthorityVerbatim`),
|
|
472
|
KEY `taxonCorrected` (`taxonCorrected`),
|
|
473
|
KEY `taxonMorphospecies` (`taxonMorphospecies`),
|
|
474
|
KEY `is_scrubbed` (`is_scrubbed`),
|
|
475
|
KEY `TD_familyCorrected` (`familyCorrected`),
|
|
476
|
KEY `TD_taxonMatchedAcceptance` (`taxonMatchedAcceptance`),
|
|
477
|
KEY `TD_taxonCorrectedAcceptance` (`taxonCorrectedAcceptance`),
|
|
478
|
KEY `TD_taxonCorrectedRank` (`taxonCorrectedRank`),
|
|
479
|
KEY `taxonCorrectedTnrsID` (`taxonCorrectedTnrsID`),
|
|
480
|
KEY `TD_is_plotName` (`is_plotName`),
|
|
481
|
KEY `genusCorrected_idx` (`genusCorrected`),
|
|
482
|
KEY `speciesCorrected` (`speciesCorrected`)
|
|
483
|
) ENGINE=InnoDB DEFAULT CHARSET=utf8 COLLATE=utf8_bin ROW_FORMAT=FIXED AUTO_INCREMENT=987490 ;
|
|
484
|
|
|
485
|
-- --------------------------------------------------------
|
|
486
|
|
|
487
|
--
|
|
488
|
-- Table structure for table `TaxonObservation`
|
|
489
|
--
|
|
490
|
|
|
491
|
CREATE TABLE IF NOT EXISTS `TaxonObservation` (
|
|
492
|
`TaxonomyObservationID` int(11) NOT NULL auto_increment,
|
|
493
|
`TaxonomyID` int(11) default NULL,
|
|
494
|
`PlotOrSpecimenFlag` int(11) default NULL,
|
|
495
|
`DBPlotID` int(11) NOT NULL,
|
|
496
|
`DBSourceID` int(11) NOT NULL,
|
|
497
|
`GBIFScientificNameOriginal` varchar(64) collate utf8_bin default NULL,
|
|
498
|
`GBIFFamilyOriginal` varchar(64) collate utf8_bin default NULL,
|
|
499
|
`GBIFGenusOriginal` varchar(64) collate utf8_bin default NULL,
|
|
500
|
`test` tinyint(3) unsigned NOT NULL default '0',
|
|
501
|
PRIMARY KEY (`TaxonomyObservationID`),
|
|
502
|
KEY `RefTaxonDimension301` (`TaxonomyID`),
|
|
503
|
KEY `Ref614` (`DBPlotID`),
|
|
504
|
KEY `TaxonomyID_2` (`TaxonomyID`,`DBPlotID`),
|
|
505
|
KEY `TaxonomyID_3` (`TaxonomyID`,`DBPlotID`),
|
|
506
|
KEY `TaxonomyID_4` (`TaxonomyID`,`DBPlotID`)
|
|
507
|
) ENGINE=InnoDB DEFAULT CHARSET=utf8 COLLATE=utf8_bin AUTO_INCREMENT=1622693 ;
|
|
508
|
|
|
509
|
-- --------------------------------------------------------
|
|
510
|
|
|
511
|
--
|
|
512
|
-- Table structure for table `TraitObservation`
|
|
513
|
--
|
|
514
|
|
|
515
|
CREATE TABLE IF NOT EXISTS `TraitObservation` (
|
|
516
|
`TraitObservationID` int(11) unsigned NOT NULL auto_increment,
|
|
517
|
`TaxonomyID` int(11) unsigned NOT NULL,
|
|
518
|
`Family` varchar(100) default NULL,
|
|
519
|
`Genus` varchar(100) default NULL,
|
|
520
|
`SpecificEpithet` varchar(100) default NULL,
|
|
521
|
`InfraspecificRank` varchar(25) default NULL,
|
|
522
|
`InfraspecificEpithet` varchar(100) default NULL,
|
|
523
|
`Taxon` varchar(255) default NULL,
|
|
524
|
`AuthorOfScientificName` varchar(255) default NULL,
|
|
525
|
`TaxonAuthor` varchar(255) default NULL,
|
|
526
|
`Habit` varchar(50) default NULL,
|
|
527
|
`TraitName` varchar(200) default NULL,
|
|
528
|
`TraitValue` varchar(100) default NULL,
|
|
529
|
`Unit` varchar(100) default NULL,
|
|
530
|
`Method` varchar(255) default NULL,
|
|
531
|
`Region` varchar(100) default NULL,
|
|
532
|
`Country` varchar(100) default NULL,
|
|
533
|
`StateProvince` varchar(100) default NULL,
|
|
534
|
`LowerPolitical` varchar(100) default NULL,
|
|
535
|
`LocalityDescription` varchar(100) default NULL,
|
|
536
|
`VerbatimLatitude` varchar(150) default NULL,
|
|
537
|
`VerbatimLongitude` varchar(150) default NULL,
|
|
538
|
`VerbatimElevation` varchar(150) default NULL,
|
|
539
|
`Source` varchar(100) default NULL,
|
|
540
|
`URLSource` varchar(100) default NULL,
|
|
541
|
`SourceCitation` varchar(1000) default NULL,
|
|
542
|
`SourceID` varchar(255) default NULL,
|
|
543
|
`VisitingDate` varchar(100) default NULL,
|
|
544
|
`ReferenceID` int(11) unsigned default NULL,
|
|
545
|
`Access` varchar(100) default NULL,
|
|
546
|
`Project_PI` varchar(255) default NULL,
|
|
547
|
`Project_PI_contact` varchar(100) default NULL,
|
|
548
|
`Observation` varchar(255) default NULL,
|
|
549
|
`Authorship` varchar(255) default NULL,
|
|
550
|
`AuthorshipContact` varchar(100) default NULL,
|
|
551
|
PRIMARY KEY (`TraitObservationID`),
|
|
552
|
KEY `TaxonomyID` (`TaxonomyID`),
|
|
553
|
KEY `Family` (`Family`),
|
|
554
|
KEY `Taxon` (`Taxon`),
|
|
555
|
KEY `TraitName` (`TraitName`),
|
|
556
|
KEY `ReferenceID` (`ReferenceID`),
|
|
557
|
KEY `TaxonAuthor` (`TaxonAuthor`)
|
|
558
|
) ENGINE=InnoDB DEFAULT CHARSET=utf8 COMMENT='Species trait observations' AUTO_INCREMENT=140286 ;
|
|
559
|
|
|
560
|
-- --------------------------------------------------------
|
|
561
|
|
|
562
|
--
|
|
563
|
-- Table structure for table `viewFullOccurrence`
|
|
564
|
--
|
|
565
|
|
|
566
|
CREATE TABLE IF NOT EXISTS `viewFullOccurrence` (
|
|
567
|
`OccurID` int(11) NOT NULL auto_increment,
|
|
568
|
`DBPlotID` int(11) default NULL,
|
|
569
|
`ObservationID` int(11) default NULL,
|
|
570
|
`Family` varchar(64) default NULL,
|
|
571
|
`TaxonomyID` int(11) default NULL,
|
|
572
|
`OrigGenus` varchar(64) default NULL,
|
|
573
|
`OrigSpecies` varchar(64) default NULL,
|
|
574
|
`TaxonCorrected` varchar(250) default NULL,
|
|
575
|
`Genus` varchar(64) default NULL,
|
|
576
|
`Species` varchar(64) default NULL,
|
|
577
|
`Latin` varchar(64) default NULL,
|
|
578
|
`Rank` varchar(16) default NULL,
|
|
579
|
`Accepted` varchar(2) default NULL,
|
|
580
|
`TaxonMorphoSpecies` varchar(255) default NULL,
|
|
581
|
`isCultivated` int(1) default '0',
|
|
582
|
`isCultivatedReason` varchar(255) default NULL,
|
|
583
|
`CountryOrig` varchar(100) default NULL,
|
|
584
|
`CountryStd` varchar(150) default NULL,
|
|
585
|
`CountryError` double default NULL,
|
|
586
|
`ProvinceStd` varchar(64) default NULL,
|
|
587
|
`ProvinceError` double default NULL,
|
|
588
|
`County` varchar(64) default NULL,
|
|
589
|
`Plot` varchar(32) default NULL,
|
|
590
|
`PlotArea` varchar(10) default NULL,
|
|
591
|
`Latitude` decimal(10,5) default NULL,
|
|
592
|
`Longitude` decimal(10,5) default NULL,
|
|
593
|
`isValidLatLong` int(1) default NULL,
|
|
594
|
`Date` date default NULL,
|
|
595
|
`SurveyType` varchar(10) default NULL,
|
|
596
|
`Abund` int(11) default NULL,
|
|
597
|
`Abund1` int(11) default NULL,
|
|
598
|
`Abund2.5` int(11) default NULL,
|
|
599
|
`Abund10` int(11) default NULL,
|
|
600
|
`PctCover` decimal(10,5) default NULL,
|
|
601
|
`DataSource` varchar(128) default NULL,
|
|
602
|
PRIMARY KEY (`OccurID`),
|
|
603
|
KEY `DBPlotID` (`DBPlotID`),
|
|
604
|
KEY `ObservationID` (`ObservationID`),
|
|
605
|
KEY `Family` (`Family`(16)),
|
|
606
|
KEY `TaxonCorrected` (`TaxonCorrected`(25)),
|
|
607
|
KEY `Latin` (`Latin`(25)),
|
|
608
|
KEY `TaxonomyID` (`TaxonomyID`),
|
|
609
|
KEY `Genus` (`Genus`(16)),
|
|
610
|
KEY `Species` (`Species`(20)),
|
|
611
|
KEY `ORIGLATIN` (`OrigGenus`(16),`OrigSpecies`(20)),
|
|
612
|
KEY `CountryStd` (`CountryStd`),
|
|
613
|
KEY `SurveyType` (`SurveyType`),
|
|
614
|
KEY `DataSource` (`DataSource`),
|
|
615
|
KEY `Rank` (`Rank`),
|
|
616
|
KEY `Accepted` (`Accepted`),
|
|
617
|
KEY `isCultivated` (`isCultivated`),
|
|
618
|
KEY `isCultivatedReason` (`isCultivatedReason`),
|
|
619
|
KEY `isValidLatLong` (`isValidLatLong`),
|
|
620
|
KEY `CountryError` (`CountryError`),
|
|
621
|
KEY `ProvinceError` (`ProvinceError`)
|
|
622
|
) ENGINE=MyISAM DEFAULT CHARSET=utf8 AUTO_INCREMENT=12050437 ;
|
|
623
|
|
|
624
|
-- --------------------------------------------------------
|
|
625
|
|
|
626
|
--
|
|
627
|
-- Table structure for table `viewFullOccurrence_bak20110825`
|
|
628
|
--
|
|
629
|
|
|
630
|
CREATE TABLE IF NOT EXISTS `viewFullOccurrence_bak20110825` (
|
|
631
|
`OccurID` int(11) NOT NULL auto_increment,
|
|
632
|
`DBPlotID` int(11) default NULL,
|
|
633
|
`ObservationID` int(11) default NULL,
|
|
634
|
`Family` varchar(64) default NULL,
|
|
635
|
`TaxonomyID` int(11) default NULL,
|
|
636
|
`OrigGenus` varchar(64) default NULL,
|
|
637
|
`OrigSpecies` varchar(64) default NULL,
|
|
638
|
`TaxonCorrected` varchar(250) default NULL,
|
|
639
|
`Genus` varchar(64) default NULL,
|
|
640
|
`Species` varchar(64) default NULL,
|
|
641
|
`Latin` varchar(64) default NULL,
|
|
642
|
`Rank` varchar(16) default NULL,
|
|
643
|
`Accepted` varchar(2) default NULL,
|
|
644
|
`TaxonMorphoSpecies` varchar(255) default NULL,
|
|
645
|
`CountryOrig` varchar(100) default NULL,
|
|
646
|
`CountryStd` varchar(150) default NULL,
|
|
647
|
`CountryError` double default NULL,
|
|
648
|
`ProvinceStd` varchar(64) default NULL,
|
|
649
|
`ProvinceError` double default NULL,
|
|
650
|
`County` varchar(64) default NULL,
|
|
651
|
`Plot` varchar(32) default NULL,
|
|
652
|
`PlotArea` varchar(10) default NULL,
|
|
653
|
`Latitude` decimal(10,5) default NULL,
|
|
654
|
`Longitude` decimal(10,5) default NULL,
|
|
655
|
`Date` date default NULL,
|
|
656
|
`SurveyType` varchar(10) default NULL,
|
|
657
|
`Abund` int(11) default NULL,
|
|
658
|
`Abund1` int(11) default NULL,
|
|
659
|
`Abund2.5` int(11) default NULL,
|
|
660
|
`Abund10` int(11) default NULL,
|
|
661
|
`PctCover` decimal(10,5) default NULL,
|
|
662
|
`DataSource` varchar(128) default NULL,
|
|
663
|
PRIMARY KEY (`OccurID`),
|
|
664
|
KEY `DBPlotID` (`DBPlotID`),
|
|
665
|
KEY `ObservationID` (`ObservationID`),
|
|
666
|
KEY `Family` (`Family`(16)),
|
|
667
|
KEY `TaxonCorrected` (`TaxonCorrected`(25)),
|
|
668
|
KEY `ORIGLATIN` (`OrigGenus`(16),`OrigSpecies`(20)),
|
|
669
|
KEY `CountryStd` (`CountryStd`),
|
|
670
|
KEY `SurveyType` (`SurveyType`),
|
|
671
|
KEY `DataSource` (`DataSource`),
|
|
672
|
KEY `Family_2` (`Family`),
|
|
673
|
KEY `Rank` (`Rank`),
|
|
674
|
KEY `CountryError` (`CountryError`),
|
|
675
|
KEY `ProvinceError` (`ProvinceError`),
|
|
676
|
KEY `TaxonomyID` (`TaxonomyID`),
|
|
677
|
KEY `Latin` (`Latin`(25)),
|
|
678
|
KEY `Accepted` (`Accepted`)
|
|
679
|
) ENGINE=MyISAM DEFAULT CHARSET=utf8 AUTO_INCREMENT=12050437 ;
|
