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###############################################
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-- Brad Boyle / SALVIAS plots validations
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###############################################
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-- extract of boyle-salvias plots for validation
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-- these queries pull the original data from SALVIAS plots
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-- project_id=2 is "SALVIAS:Boyle Transects"
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USE salvias_plots;
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-- Count of species per plot from three plots
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SELECT PlotCode, COUNT(DISTINCT Family, Genus, Species) as totSpecies
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FROM PlotMetadata p JOIN PlotObservations o
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ON p.PlotID=o.PlotID
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WHERE project_id=2
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GROUP BY PlotCode
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ORDER BY PlotCode;
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-- List of species per plot, three plots
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SELECT DISTINCT PlotCode, CONCAT(IF(Genus IS NULL OR Genus='',IFNULL(Family,''),''),' ',IFNULL(Genus,''),' ', IFNULL(Species,'')) AS morphospecies
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FROM PlotObservations
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WHERE PlotCode IN ('m2250-1','c2250-1','e2250-1')
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ORDER BY PlotCode, morphospecies;
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-- Count of individuals per species, same plots
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SELECT
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PlotCode,
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CONCAT(IF(Genus IS NULL OR Genus='',IFNULL(Family,''),''),' ',IFNULL(Genus,''),' ', IFNULL(Species,'')) AS morphospecies,
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SUM(NoInd) AS individuals
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FROM PlotObservations
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WHERE PlotCode IN ('m2250-1','c2250-1','e2250-1')
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GROUP BY PlotCode, morphospecies
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ORDER BY PlotCode, morphospecies;
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-- Count of stems >=2.5 cm dbh per individual, same plots
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SELECT
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PlotCode,
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Ind as individualID,
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CONCAT(IF(Genus IS NULL OR Genus='',IFNULL(Family,''),''),' ',IFNULL(Genus,''),' ', IFNULL(Species,'')) AS morphospecies,
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COUNT(DISTINCT stem_id) AS stems
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FROM PlotObservations o JOIN stems s
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ON o.PlotObsID=s.PlotObsID
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WHERE PlotCode IN ('m2250-1','c2250-1','e2250-1')
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GROUP BY PlotCode, morphospecies, individualID
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ORDER BY PlotCode, morphospecies, individualID;
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-- Count of individuals with >= one stem >= 2.5 cm dbh per plot
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SELECT
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PlotCode, SUM(DISTINCT Ind) AS individuals
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FROM PlotMetadata p JOIN PlotObservations o JOIN stems s
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ON p.PlotID=o.PlotID AND o.PlotObsID=s.PlotObsID
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WHERE project_id=2
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AND stem_dbh>=2.5
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GROUP BY PlotCode
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ORDER BY PlotCode;
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-- Count of stems >= 2.5 cm dbh per plot
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SELECT
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PlotCode, COUNT(DISTINCT stem_id) AS stems
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FROM PlotMetadata p JOIN PlotObservations o JOIN stems s
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ON p.PlotID=o.PlotID AND o.PlotObsID=s.PlotObsID
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WHERE project_id=2
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AND stem_dbh>=2.5
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GROUP BY PlotCode
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ORDER BY PlotCode;
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-- Count of stems >=10 cm dbh per plot
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SELECT
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PlotCode, COUNT(DISTINCT stem_id) AS stems
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FROM PlotMetadata p JOIN PlotObservations o JOIN stems s
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ON p.PlotID=o.PlotID AND o.PlotObsID=s.PlotObsID
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WHERE project_id=2
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AND stem_dbh>=10
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GROUP BY PlotCode
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ORDER BY PlotCode;
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