Task #464

Updated by Aaron Marcuse-Kubitza over 12 years ago

For steps h2. Steps to reverse, see [[XPath Reversing]] reverse 

 h3. -@DwC2-VegBIEN.specimens.csv@- 

 # -@bin/in_place mappings/DwC2-VegBIEN.specimens.csv env left_in_root= left_out_root= right_in_root= right_out_root= left_connect= right_connect='/location/locationevent' bin/ch_root_via@- 
 # -In the map spreadsheet, remove the following (order matters):- 
 <pre> 
 /specimenreplicate/*_id/locationevent 
 /locationevent/*_id/location 
 </pre> 
 # -Test and commit- 

 h3. @VegX-VegBIEN.stems.csv@ input 

 # -@bin/in_place mappings/VegX-VegBIEN.stems.csv env left_in_root= left_out_root= right_in_root='/stemobservation' right_out_root='/stemobservation' left_connect='/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->' right_connect='/stemobservation' bin/ch_root_via@- 
 ** The new root (inlined with the paths) will be: 
 @/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]@ 
 # -Do the same for all the VegX via maps:- 
 ## -@VegX.plots.csv@:- 
 <pre> 
 for map in inputs/*/maps/VegX.plots.csv; do 
     bin/in_place "$map" env left_in_root= left_out_root= right_in_root='/*s/plotObservation' right_out_root= left_connect= right_connect='/*s/plot->/*s/plotObservation[*UniqueIdentifierID]' bin/ch_root_via 
 done 
 </pre> 
 ## -@VegX.organisms.csv@:- 
 <pre> 
 for map in inputs/*/maps/VegX.organisms.csv; do 
     bin/in_place "$map" env left_in_root= left_out_root= right_in_root='/*s/individualOrganismObservation' right_out_root= left_connect= right_connect='/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]' bin/ch_root_via 
 done 
 </pre> 
 ## -@VegX.stems.csv@:- 
 <pre> 
 for map in inputs/*/maps/VegX.stems.csv; do 
     bin/in_place "$map" env left_in_root= left_out_root= right_in_root='/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]' right_out_root= left_connect= right_connect='/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]' bin/ch_root_via 
 done 
 </pre> 
 # -In the map spreadsheet _and all VegX via maps_ (@VegX.{plots,organisms,stems}.csv@), remove the following (order matters):- 
 <pre> 
 ->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation 
 ->/*s/individualOrganismObservation[*ID]/*ID->/*s/plotObservation 
 ->/*s/plotObservation[*UniqueIdentifierID]/*UniqueIdentifierID->/*s/plot 
 </pre> 
 # -Update @mappings/Makefile@ VegX section- 
 # Update @inputs/CTFS/maps/VegX.organisms.csv@ input 
 ** Need to prepend organisms->plots root to go from plots into organisms and back out 
 ** Update left side using similar procedure to @VegX-VegBIEN.stems.csv@ input above? 
 # -Test and commit- 

 h3. @VegX-VegBIEN.stems.csv@ output 

 # @bin/in_place mappings/VegX-VegBIEN.stems.csv env left_in_root= left_out_root= right_in_root= right_out_root= left_connect= right_connect='/location/locationevent' bin/ch_root_via@ 
 # In the map spreadsheet, remove the following (order matters): 
 <pre> 
 /specimenreplicate/*_id/locationevent 
 /locationevent/*_id/location 
 ... 
 </pre> 
 # Update @mappings/Makefile@ VegX section 
 # Test and commit 

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