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From 12/13/2013 to 01/11/2014

01/09/2014

01:38 AM Revision 11941: planning/meetings/BIEN conference call availability.xlsx: updated
Aaron Marcuse-Kubitza
12:31 AM Revision 11940: /README.TXT: to synchronize a Mac's settings with my testing machine's: added step to remove the downloaded Spam folder, because spam e-mails often contain viruses that would trigger clamscan
Aaron Marcuse-Kubitza

12/20/2013

10:45 PM Revision 11939: fix: planning/timeline/timeline.xls: realigned legend
Aaron Marcuse-Kubitza
10:44 PM Revision 11938: planning/timeline/timeline.xls: hid previous weeks
Aaron Marcuse-Kubitza
10:43 PM Revision 11937: planning/timeline/timeline.xls: crossed out and hid completed tasks
Aaron Marcuse-Kubitza
10:41 PM Revision 11936: planning/timeline/timeline.xls: updated for progress
Aaron Marcuse-Kubitza
05:41 PM Revision 11935: web/links/index.htm: updated to Firefox bookmarks. open-sourcing BIEN: added links for VegBank's license (GPLv2), and how these terms apply to us (a diff of our changes is not GPL-ed under GPLv2, although it is claimed to be GPL-ed under GPLv3)
Aaron Marcuse-Kubitza
04:41 PM Revision 11934: inputs/VegBank/^taxon_observation.**.sample/create.sql, map.csv: added new project columns
Aaron Marcuse-Kubitza
04:31 PM Revision 11933: inputs/VegBank/taxon_observation.**/postprocess.sql: added the project table
Aaron Marcuse-Kubitza
04:25 PM Revision 11932: mapped inputs/VegBank/project/, which includes the projectName for attribution
Aaron Marcuse-Kubitza
02:56 PM Revision 11931: inputs/CVS/^taxon_observation.**.sample/create.sql, map.csv: added new project columns
Aaron Marcuse-Kubitza
02:44 PM Revision 11930: inputs/CVS/taxon_observation.**/postprocess.sql: added the project table
Aaron Marcuse-Kubitza
02:42 PM Revision 11929: inputs/CVS/project/map.csv: mapped stopDate->projectEndDate
Aaron Marcuse-Kubitza
02:35 PM Revision 11928: mapped inputs/CVS/project/, which includes the projectName for attribution
Aaron Marcuse-Kubitza
01:25 AM Revision 11927: inputs/VegBIEN/Redmine/svn/.htaccess: updated to use *much* faster direct repository URL rather than Redmine web interface, now that the repository itself is publicly accessible in addition to the Redmine view of it
Aaron Marcuse-Kubitza
01:18 AM Revision 11926: planning/timeline/timeline.xls: updated for progress
Aaron Marcuse-Kubitza
01:13 AM Revision 11925: planning/timeline/timeline.2013.xls: renamed to timeline.xls so that this can continue to be used for 2014 (leaving a symlink from the old filename to preserve permalinks)
Aaron Marcuse-Kubitza
12:28 AM Revision 11924: fix: inputs/TEX/Specimen*/map.csv, postprocess.sql: habitat: also placed in occurrenceRemarks so that this field gets parsed for growth form information, as requested by Brad (wiki.vegpath.org/TEX_validation#2013-2-26)
Aaron Marcuse-Kubitza

12/19/2013

11:49 PM Revision 11923: fix: inputs/TEX/Specimen*/map.csv: mapped constant values for specimenHolderInstitutions, country. these have to be added with `rm=1 ./inputs/TEX/Specimen.../run postprocess`.
Aaron Marcuse-Kubitza
11:42 PM Revision 11922: bugfix: inputs/TEX/Specimen2/map.csv: mapped BARCODE to accessionNumber so that we have a unique ID for each row
Aaron Marcuse-Kubitza
11:11 PM Revision 11921: schemas/vegbien.sql: analytical_stem_view: scientificName_verbatim: don't use taxonverbatim.taxonname+author as the scientificName_verbatim if only the author is provided. (this lead to weird scientificName_verbatims that contain just the author.)
Aaron Marcuse-Kubitza

12/17/2013

08:06 AM Revision 11920: inputs/datasource_release_status.xlsx: updated
Aaron Marcuse-Kubitza
07:28 AM Revision 11919: web/links/index.htm: updated to Firefox bookmarks. added links for fixing the "App Store is temporarily unavailable" error (turn on Spotlight) and modifying a running shell script (unlink it first).
Aaron Marcuse-Kubitza
05:47 AM Revision 11918: bugfix: bin/map: in_is_db: don't ignore errors when the table does not exist, because these prevent an errexit and allow an import to continue when a staging table is missing. suppressing this error had previously been necessary because metadata-only tables (Source/) used to not have installed staging tables, and the program had to react accordingly.
Aaron Marcuse-Kubitza

12/16/2013

07:05 PM Revision 11917: inputs/CVS/^taxon_observation.**.sample/create.sql: added Mike Lee's additional plots used to validate confidentiality-related fields (wiki.vegpath.org/CVS_validation#plots-to-include)
Aaron Marcuse-Kubitza
06:00 PM Revision 11916: bugfix: inputs/CVS/^taxon_observation.**.sample/create.sql: include taxonName in the subset of columns that's imported for the validation, because it is _alt-ed with scientificName for forming the TNRS input name. this is unique to CVS, which is why it was not part of the validation subset copied from the VegBank subset.
Aaron Marcuse-Kubitza
05:46 PM Revision 11915: /README.TXT: Full database import: documented that you should always start with a clean shell, which does not have changes to the env vars. (there have been inexplicable bugs that went away after closing and reopening the terminal window.) note that running `exec bash` is not sufficient to *reset* the env vars.
Aaron Marcuse-Kubitza
04:58 PM Revision 11914: fix: lib/sh/util.sh: verbosity_min(): usage: clarified that '' is a special value that causes $verbosity to be overwritten to ''
Aaron Marcuse-Kubitza
04:45 PM Revision 11913: lib/runscripts/table.run: added test_() target and use it in remake_VegBIEN_mappings() (it would not be clear that remake_VegBIEN_mappings() runs the tests)
Aaron Marcuse-Kubitza
01:43 PM Revision 11912: bugfix: inputs/.TNRS/schema.sql: granted bien_read SELECT access to derived views as well as the core tnrs table
Aaron Marcuse-Kubitza

12/15/2013

05:30 PM Revision 11911: updated inputs/datasource_release_status.xlsx
Aaron Marcuse-Kubitza
05:27 PM Revision 11910: added inputs/datasource_release_status.xlsx, export of Google spreadsheet at https://docs.google.com/spreadsheet/ccc?key=0ArZXrTAXd-TYdDRRb2RxYi11TWZrQVh5bVdKOURCeFE
Aaron Marcuse-Kubitza
 

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