Activity

From 04/24/2014 to 05/23/2014

04:43 PM Task #932 (New): Discovering BIEN data through iPlant: iPlant will assign DOIs to datasets made public through its infrastructure. For the BIEN db data, the plan is:
* t... Martha Narro
04:32 PM Task #931 (New): BIEN db at iPlant: Parent issue for tasks related to moving BIEN3 relational database and associated analytical views to iPlant. Martha Narro

04:26 PM Task #929 (New): change TNRS client to store metadata: * see details in [[2013-06-13 conference call#include-TNRS-version-and-settings-in-TNRS-cache]]
* after implementi... Aaron Marcuse-Kubitza
04:17 PM Task #928 (New): switch to new TNRS setup: # #927 (part of #915)
# #917
# #916 (using rescrubbed names)
# #915
# -#929 (metadata)- _postponed_ Aaron Marcuse-Kubitza
03:26 PM Task #927 (Resolved): move morphospecies name formation to normalized DB: * currently, it's only in the analytical_stem view Aaron Marcuse-Kubitza

09:43 AM Task #917: TNRS: Instructions for new version with TPL: Aaron, for now (next couple of months, this must be done on the development TNRS web app since TPL is only on the dev... Martha Narro

02:32 PM Task #917 (New): TNRS: Instructions for new version with TPL: From Brad:
I’ve given some thought to the TPL matter. The algorithm isn’t hard, but Aaron will have to do the sort... Martha Narro

05:03 PM Task #916: Taxon name validation: VegBank: regarding:
Line 617: TNRS gives a synonym for Aronia prunifolia in a different genus, but this is missed here
L... Martha Narro
04:35 PM Task #916 (New): Taxon name validation: VegBank: Hi Aaron,
Bob only had time to get part way through the VegBank taxon validation file you sent, but there are some... Martha Narro
03:13 PM Task #915 (New): Taxon Name Validation: 1. Please correct the following in taxonMorphospecies:
1.1. -Family should be included in taxonMorphospecies only ... Martha Narro

05:30 PM Task #909 (New): in aggregating validations pipeline, support using input result sets from CSVs instead of only by querying the staging tables: * allows using input query results run on the raw data rather than the preprocessed staging tables
* enables providi... Aaron Marcuse-Kubitza

02:33 PM Task #908 (New): generate the source-general derived columns directly on the denormalized staging table: * avoids needing to run the full Python import, which is the part that is currently buggy
* see [[New-style_import#s... Aaron Marcuse-Kubitza

05:46 PM Task #907 (Resolved): troubleshoot rsync verification errors: * normally only happens when a file is concurrently modified, but this file was not in use
* this may indicate disk ... Aaron Marcuse-Kubitza

05:58 AM Task #905 (Resolved): narrow down the cause of the import bug (incorrect join columns and disk space leak): _see #887, #902_
h3. -alternate OS approach-
p(. _tried, and problem also occurs on Mac, so using other approac... Aaron Marcuse-Kubitza

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