05/22/2014

04:43 PM Task #932 (New): Discovering BIEN data through iPlant

iPlant will assign DOIs to datasets made public through its infrastructure. For the BIEN db data, the plan is:
* t... Martha Narro

04:32 PM Task #931 (New): BIEN db at iPlant

Parent issue for tasks related to moving BIEN3 relational database and associated analytical views to iPlant. Martha Narro

05/20/2014

04:26 PM Task #929 (New): change TNRS client to store metadata

* see details in [[2013-06-13 conference call#include-TNRS-version-and-settings-in-TNRS-cache]]
* after implementi... Aaron Marcuse-Kubitza

04:17 PM Task #928 (New): switch to new TNRS setup

# #927 (part of #915)
# #917
# #916 (using rescrubbed names)
# #915
# -#929 (metadata)- _postponed_ Aaron Marcuse-Kubitza

03:26 PM Task #927 (Resolved): move morphospecies name formation to normalized DB

* currently, it's only in the analytical_stem view Aaron Marcuse-Kubitza

05/15/2014

09:43 AM Task #917: TNRS: Instructions for new version with TPL

Aaron, for now (next couple of months, this must be done on the development TNRS web app since TPL is only on the dev... Martha Narro

05/13/2014

02:32 PM Task #917 (New): TNRS: Instructions for new version with TPL

From Brad:
I’ve given some thought to the TPL matter. The algorithm isn’t hard, but Aaron will have to do the sort... Martha Narro

05/12/2014

05:03 PM Task #916: Taxon name validation: VegBank

regarding:
Line 617: TNRS gives a synonym for Aronia prunifolia in a different genus, but this is missed here
L... Martha Narro

04:35 PM Task #916 (New): Taxon name validation: VegBank

Hi Aaron,
Bob only had time to get part way through the VegBank taxon validation file you sent, but there are some... Martha Narro

03:13 PM Task #915 (New): Taxon Name Validation

1. Please correct the following in taxonMorphospecies:
1.1. -Family should be included in taxonMorphospecies only ... Martha Narro

05/03/2014

05:30 PM Task #909 (New): in aggregating validations pipeline, support using input result sets from CSVs instead of only by querying the staging tables

* allows using input query results run on the raw data rather than the preprocessed staging tables
* enables providi... Aaron Marcuse-Kubitza

04/30/2014

02:33 PM Task #908 (New): generate the source-general derived columns directly on the denormalized staging table

* avoids needing to run the full Python import, which is the part that is currently buggy
* see [[New-style_import#s... Aaron Marcuse-Kubitza

04/29/2014

05:46 PM Task #907 (Resolved): troubleshoot rsync verification errors

* normally only happens when a file is concurrently modified, but this file was not in use
* this may indicate disk ... Aaron Marcuse-Kubitza