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7749
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aaronmk
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SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0;
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SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0;
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SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='TRADITIONAL';
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DROP SCHEMA IF EXISTS `default_schema` ;
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CREATE SCHEMA IF NOT EXISTS `default_schema` ;
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USE `default_schema` ;
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-- -----------------------------------------------------
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-- Table `default_schema`.`reference`
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-- -----------------------------------------------------
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DROP TABLE IF EXISTS `default_schema`.`reference` ;
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CREATE TABLE IF NOT EXISTS `default_schema`.`reference` (
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`reference_id` INT NOT NULL ,
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PRIMARY KEY (`reference_id`) )
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ENGINE = InnoDB;
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-- -----------------------------------------------------
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-- Table `default_schema`.`taxon`
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-- -----------------------------------------------------
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DROP TABLE IF EXISTS `default_schema`.`taxon` ;
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxon` (
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`taxon_id` INT NOT NULL ,
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`taxonrank` VARCHAR(45) NOT NULL ,
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`scientificname` VARCHAR(100) NOT NULL ,
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`scientificnameauthorship` VARCHAR(150) NULL ,
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`authorship_reference_id` INT NULL ,
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PRIMARY KEY (`taxon_id`) ,
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INDEX `fk_taxon_reference2` (`authorship_reference_id` ASC) ,
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CONSTRAINT `fk_taxon_reference2`
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FOREIGN KEY (`authorship_reference_id` )
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REFERENCES `default_schema`.`reference` (`reference_id` )
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ON DELETE NO ACTION
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ON UPDATE NO ACTION)
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ENGINE = InnoDB;
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-- -----------------------------------------------------
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-- Table `default_schema`.`taxonconcept`
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-- -----------------------------------------------------
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DROP TABLE IF EXISTS `default_schema`.`taxonconcept` ;
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxonconcept` (
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`taxonconcept_id` INT(11) NOT NULL ,
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`taxon_id` INT NOT NULL ,
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`concept_reference_id` INT NOT NULL ,
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PRIMARY KEY (`taxonconcept_id`) ,
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INDEX `fk_taxonconcept_taxon1` (`taxon_id` ASC) ,
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INDEX `fk_taxonconcept_reference1` (`concept_reference_id` ASC) ,
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CONSTRAINT `fk_taxonconcept_taxon1`
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FOREIGN KEY (`taxon_id` )
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REFERENCES `default_schema`.`taxon` (`taxon_id` )
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ON DELETE NO ACTION
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ON UPDATE NO ACTION,
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CONSTRAINT `fk_taxonconcept_reference1`
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FOREIGN KEY (`concept_reference_id` )
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REFERENCES `default_schema`.`reference` (`reference_id` )
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ON DELETE NO ACTION
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ON UPDATE NO ACTION);
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-- -----------------------------------------------------
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-- Table `default_schema`.`taxonverbatim`
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-- -----------------------------------------------------
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DROP TABLE IF EXISTS `default_schema`.`taxonverbatim` ;
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxonverbatim` (
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`taxonverbatim_id` INT NOT NULL ,
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`scientificname` VARCHAR(200) NULL DEFAULT NULL ,
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`scientificnameauthorship` VARCHAR(200) NULL DEFAULT NULL ,
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`scientificnamewithauthor` VARCHAR(250) NULL DEFAULT NULL ,
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`kingdom` VARCHAR(50) NULL DEFAULT NULL ,
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`subkingdom` VARCHAR(50) NULL DEFAULT NULL ,
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`division` VARCHAR(50) NULL DEFAULT NULL ,
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`subdivision` VARCHAR(50) NULL DEFAULT NULL ,
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`class` VARCHAR(50) NULL DEFAULT NULL ,
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`subclass` VARCHAR(50) NULL DEFAULT NULL ,
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`order` VARCHAR(50) NULL DEFAULT NULL ,
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`suborder` VARCHAR(50) NULL DEFAULT NULL ,
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`family` VARCHAR(50) NULL DEFAULT NULL ,
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`subfamily` VARCHAR(50) NULL DEFAULT NULL ,
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`tribe` VARCHAR(50) NULL DEFAULT NULL ,
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`subtribe` VARCHAR(50) NULL DEFAULT NULL ,
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`genus` VARCHAR(50) NULL DEFAULT NULL ,
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`subgenus` VARCHAR(50) NULL DEFAULT NULL ,
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`section` VARCHAR(50) NULL DEFAULT NULL ,
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`subsection` VARCHAR(50) NULL DEFAULT NULL ,
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`series` VARCHAR(50) NULL DEFAULT NULL ,
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`subseries` VARCHAR(50) NULL DEFAULT NULL ,
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`species` VARCHAR(50) NULL DEFAULT NULL ,
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`subspecies` VARCHAR(50) NULL DEFAULT NULL ,
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`variety` VARCHAR(50) NULL DEFAULT NULL ,
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`subvariety` VARCHAR(50) NULL DEFAULT NULL ,
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| 97 |
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`form` VARCHAR(50) NULL DEFAULT NULL ,
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| 98 |
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`matched_taxonconcept_id` INT(11) NULL ,
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`taxonmatched` VARCHAR(100) NULL ,
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`taxonmatchedauthor` VARCHAR(150) NULL ,
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`unmatchedterms` VARCHAR(250) NULL ,
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`matchscore` DECIMAL(3,1) NULL ,
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| 103 |
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`taxonmatchedacceptance` VARCHAR(45) NULL ,
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`accepted_taxonconcept_id` INT(11) NULL ,
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`acceptedtaxon` VARCHAR(100) NULL ,
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`acceptedauthor` VARCHAR(150) NULL ,
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`family_taxonconcept_id` INT(11) NULL ,
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`acceptedfamily` VARCHAR(50) NULL ,
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`acceptedgenus` VARCHAR(50) NULL ,
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`acceptedspecies` VARCHAR(45) NULL ,
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| 111 |
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`accepted_taxonacceptance` VARCHAR(45) NULL ,
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`acceptedtaxonrank` VARCHAR(45) NULL ,
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`acceptedtaxonmorphospecies` VARCHAR(250) NULL ,
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PRIMARY KEY (`taxonverbatim_id`) ,
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INDEX `fk_taxonverbatim_taxonconcept1` (`matched_taxonconcept_id` ASC) ,
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INDEX `fk_taxonverbatim_taxonconcept2` (`accepted_taxonconcept_id` ASC) ,
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INDEX `fk_taxonverbatim_taxonconcept3` (`family_taxonconcept_id` ASC) ,
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| 118 |
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CONSTRAINT `fk_taxonverbatim_taxonconcept1`
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FOREIGN KEY (`matched_taxonconcept_id` )
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| 120 |
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REFERENCES `default_schema`.`taxonconcept` (`taxonconcept_id` )
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| 121 |
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ON DELETE NO ACTION
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| 122 |
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ON UPDATE NO ACTION,
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| 123 |
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CONSTRAINT `fk_taxonverbatim_taxonconcept2`
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FOREIGN KEY (`accepted_taxonconcept_id` )
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| 125 |
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REFERENCES `default_schema`.`taxonconcept` (`taxonconcept_id` )
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| 126 |
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ON DELETE NO ACTION
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| 127 |
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ON UPDATE NO ACTION,
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| 128 |
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CONSTRAINT `fk_taxonverbatim_taxonconcept3`
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| 129 |
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FOREIGN KEY (`family_taxonconcept_id` )
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| 130 |
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REFERENCES `default_schema`.`taxonconcept` (`taxonconcept_id` )
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| 131 |
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ON DELETE NO ACTION
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| 132 |
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ON UPDATE NO ACTION)
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ENGINE = InnoDB,
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COMMENT = '\n' ;
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| 136 |
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-- -----------------------------------------------------
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| 138 |
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-- Table `default_schema`.`taxondetermination`
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| 139 |
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-- -----------------------------------------------------
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DROP TABLE IF EXISTS `default_schema`.`taxondetermination` ;
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxondetermination` (
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`taxondetermination_id` INT(11) NOT NULL ,
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| 144 |
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`taxonverbatim_id` INT NOT NULL ,
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| 145 |
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`taxonoccurrence_id` INT(11) NOT NULL ,
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| 146 |
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`determiner_party_id` INT(11) NULL DEFAULT NULL ,
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| 147 |
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`determiner_role` VARCHAR(250) NOT NULL DEFAULT 'unknown' ,
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| 148 |
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`determinationtype` TEXT NULL DEFAULT NULL ,
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| 149 |
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`determination_reference_id` INT NOT NULL ,
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| 150 |
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`isoriginal` INT(1) NOT NULL DEFAULT false ,
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| 151 |
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`iscurrent` INT(1) NOT NULL DEFAULT false ,
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| 152 |
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`taxonfit` TEXT NULL DEFAULT NULL ,
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| 153 |
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`taxonconfidence` TEXT NULL DEFAULT NULL ,
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| 154 |
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`grouptype` TEXT NULL DEFAULT NULL ,
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| 155 |
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`notes` TEXT NULL DEFAULT NULL ,
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| 156 |
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`notespublic` INT(1) NULL DEFAULT NULL ,
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| 157 |
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`notesmgt` INT(1) NULL DEFAULT NULL ,
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| 158 |
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`revisions` INT(1) NULL DEFAULT NULL ,
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| 159 |
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`determinationdate` TIMESTAMP NULL DEFAULT NULL ,
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| 160 |
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`taxonverbatim_id` INT(11) NULL DEFAULT NULL ,
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| 161 |
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PRIMARY KEY (`taxondetermination_id`) ,
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| 162 |
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INDEX `fk_taxondetermination_taxonverbatim1` (`taxonverbatim_id` ASC) ,
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| 163 |
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INDEX `fk_taxondetermination_reference1` (`determination_reference_id` ASC) ,
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| 164 |
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CONSTRAINT `fk_taxondetermination_taxonverbatim1`
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| 165 |
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FOREIGN KEY (`taxonverbatim_id` )
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| 166 |
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REFERENCES `default_schema`.`taxonverbatim` (`taxonverbatim_id` )
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| 167 |
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ON DELETE NO ACTION
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| 168 |
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ON UPDATE NO ACTION,
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| 169 |
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CONSTRAINT `fk_taxondetermination_reference1`
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| 170 |
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FOREIGN KEY (`determination_reference_id` )
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| 171 |
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REFERENCES `default_schema`.`reference` (`reference_id` )
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| 172 |
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ON DELETE NO ACTION
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| 173 |
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ON UPDATE NO ACTION);
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| 174 |
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| 175 |
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| 176 |
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-- -----------------------------------------------------
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| 177 |
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-- Table `default_schema`.`taxonstatus`
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| 178 |
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-- -----------------------------------------------------
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| 179 |
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DROP TABLE IF EXISTS `default_schema`.`taxonstatus` ;
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| 181 |
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxonstatus` (
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`taxonstatus_id` INT(11) NOT NULL ,
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| 183 |
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`taxonconcept_id` INT(11) NOT NULL ,
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| 184 |
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`party_id` INT(11) NULL DEFAULT NULL ,
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| 185 |
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`taxonconceptstatus` VARCHAR(250) NOT NULL DEFAULT 'undetermined' ,
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| 186 |
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`reference_id` INT(11) NULL DEFAULT NULL ,
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| 187 |
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`taxonpartycomments` TEXT NULL DEFAULT NULL ,
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| 188 |
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`startdate` TIMESTAMP NULL DEFAULT NULL ,
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| 189 |
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`stopdate` TIMESTAMP NULL DEFAULT NULL ,
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| 190 |
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PRIMARY KEY (`taxonstatus_id`) ,
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| 191 |
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UNIQUE INDEX `taxonstatus_unique` (`taxonconcept_id` ASC, `party_id` ASC) ,
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| 192 |
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CONSTRAINT `taxonstatus_taxonconcept_id_fkey`
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| 193 |
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FOREIGN KEY (`taxonconcept_id` )
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| 194 |
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REFERENCES `default_schema`.`taxonconcept` (`taxonconcept_id` )
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| 195 |
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ON DELETE CASCADE
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| 196 |
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ON UPDATE CASCADE);
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| 197 |
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| 198 |
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| 199 |
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-- -----------------------------------------------------
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| 200 |
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-- Table `default_schema`.`taxoncorrelation`
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| 201 |
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-- -----------------------------------------------------
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| 202 |
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DROP TABLE IF EXISTS `default_schema`.`taxoncorrelation` ;
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| 203 |
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| 204 |
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxoncorrelation` (
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`taxoncorrelation_id` INT(11) NOT NULL ,
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| 206 |
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`taxonstatus_id` INT(11) NOT NULL ,
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| 207 |
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`taxonconcept_id` INT(11) NOT NULL ,
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| 208 |
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`taxonconcept_id` INT(11) NOT NULL ,
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| 209 |
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`plantconvergence` TEXT NOT NULL ,
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| 210 |
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`correlationstart` TIMESTAMP NOT NULL ,
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| 211 |
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`correlationstop` TIMESTAMP NULL DEFAULT NULL ,
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| 212 |
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PRIMARY KEY (`taxoncorrelation_id`) ,
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| 213 |
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INDEX `taxoncorrelation_taxonstatus_id_fkey` (`taxonstatus_id` ASC) ,
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| 214 |
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INDEX `fk_taxoncorrelation_taxonconcept1` (`taxonconcept_id` ASC) ,
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| 215 |
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CONSTRAINT `taxoncorrelation_taxonstatus_id_fkey`
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| 216 |
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FOREIGN KEY (`taxonstatus_id` )
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| 217 |
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REFERENCES `default_schema`.`taxonstatus` (`taxonstatus_id` )
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| 218 |
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ON DELETE CASCADE
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| 219 |
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ON UPDATE CASCADE,
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| 220 |
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CONSTRAINT `fk_taxoncorrelation_taxonconcept1`
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| 221 |
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FOREIGN KEY (`taxonconcept_id` )
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| 222 |
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REFERENCES `default_schema`.`taxonconcept` (`taxonconcept_id` )
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| 223 |
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ON DELETE NO ACTION
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| 224 |
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ON UPDATE NO ACTION);
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| 225 |
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| 226 |
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| 227 |
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-- -----------------------------------------------------
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| 228 |
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-- Table `default_schema`.`taxonlineage`
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| 229 |
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-- -----------------------------------------------------
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| 230 |
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DROP TABLE IF EXISTS `default_schema`.`taxonlineage` ;
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| 231 |
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| 232 |
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxonlineage` (
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| 233 |
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`taxonlineage_id` INT(11) NOT NULL ,
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| 234 |
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`childtaxonstatus_id` INT(11) NOT NULL ,
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| 235 |
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`parenttaxonstatus_id` INT(11) NOT NULL ,
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| 236 |
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PRIMARY KEY (`taxonlineage_id`) ,
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| 237 |
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INDEX `taxonlineage_childtaxonstatus_id_fkey` (`childtaxonstatus_id` ASC) ,
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| 238 |
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INDEX `taxonlineage_parenttaxonstatus_id_fkey` (`parenttaxonstatus_id` ASC) ,
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| 239 |
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CONSTRAINT `taxonlineage_childtaxonstatus_id_fkey`
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| 240 |
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FOREIGN KEY (`childtaxonstatus_id` )
|
| 241 |
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REFERENCES `default_schema`.`taxonstatus` (`taxonstatus_id` )
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| 242 |
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ON DELETE CASCADE
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| 243 |
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ON UPDATE CASCADE,
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| 244 |
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CONSTRAINT `taxonlineage_parenttaxonstatus_id_fkey`
|
| 245 |
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FOREIGN KEY (`parenttaxonstatus_id` )
|
| 246 |
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REFERENCES `default_schema`.`taxonstatus` (`taxonstatus_id` )
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| 247 |
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ON DELETE CASCADE
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| 248 |
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ON UPDATE CASCADE);
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| 249 |
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|
| 250 |
|
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|
| 251 |
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-- -----------------------------------------------------
|
| 252 |
|
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-- Table `default_schema`.`taxonclassification`
|
| 253 |
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-- -----------------------------------------------------
|
| 254 |
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DROP TABLE IF EXISTS `default_schema`.`taxonclassification` ;
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| 255 |
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|
| 256 |
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxonclassification` (
|
| 257 |
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`taxonclassification_id` INT NOT NULL ,
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| 258 |
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`taxonconcept_id` INT(11) NOT NULL ,
|
| 259 |
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`parent_taxonconcept_id` INT(11) NOT NULL ,
|
| 260 |
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PRIMARY KEY (`taxonclassification_id`) ,
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| 261 |
|
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INDEX `fk_taxonclassification_taxonconcept1` (`taxonconcept_id` ASC) ,
|
| 262 |
|
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INDEX `fk_taxonclassification_taxonconcept2` (`parent_taxonconcept_id` ASC) ,
|
| 263 |
|
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CONSTRAINT `fk_taxonclassification_taxonconcept1`
|
| 264 |
|
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FOREIGN KEY (`taxonconcept_id` )
|
| 265 |
|
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REFERENCES `default_schema`.`taxonconcept` (`taxonconcept_id` )
|
| 266 |
|
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ON DELETE NO ACTION
|
| 267 |
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ON UPDATE NO ACTION,
|
| 268 |
|
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CONSTRAINT `fk_taxonclassification_taxonconcept2`
|
| 269 |
|
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FOREIGN KEY (`parent_taxonconcept_id` )
|
| 270 |
|
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REFERENCES `default_schema`.`taxonconcept` (`taxonconcept_id` )
|
| 271 |
|
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ON DELETE NO ACTION
|
| 272 |
|
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ON UPDATE NO ACTION)
|
| 273 |
|
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ENGINE = InnoDB;
|
| 274 |
|
|
|
| 275 |
|
|
|
| 276 |
|
|
-- -----------------------------------------------------
|
| 277 |
|
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-- Table `default_schema`.`taxon`
|
| 278 |
|
|
-- -----------------------------------------------------
|
| 279 |
|
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DROP TABLE IF EXISTS `default_schema`.`taxon` ;
|
| 280 |
|
|
|
| 281 |
|
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxon` (
|
| 282 |
|
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`taxon_id` INT NOT NULL ,
|
| 283 |
|
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`taxonrank` VARCHAR(45) NOT NULL ,
|
| 284 |
|
|
`scientificname` VARCHAR(100) NOT NULL ,
|
| 285 |
|
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`scientificnameauthorship` VARCHAR(150) NULL ,
|
| 286 |
|
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`authorship_reference_id` INT NULL ,
|
| 287 |
|
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PRIMARY KEY (`taxon_id`) ,
|
| 288 |
|
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INDEX `fk_taxon_reference2` (`authorship_reference_id` ASC) ,
|
| 289 |
|
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CONSTRAINT `fk_taxon_reference2`
|
| 290 |
|
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FOREIGN KEY (`authorship_reference_id` )
|
| 291 |
|
|
REFERENCES `default_schema`.`reference` (`reference_id` )
|
| 292 |
|
|
ON DELETE NO ACTION
|
| 293 |
|
|
ON UPDATE NO ACTION)
|
| 294 |
|
|
ENGINE = InnoDB;
|
| 295 |
|
|
|
| 296 |
|
|
|
| 297 |
|
|
-- -----------------------------------------------------
|
| 298 |
|
|
-- Table `default_schema`.`taxonclassification`
|
| 299 |
|
|
-- -----------------------------------------------------
|
| 300 |
|
|
DROP TABLE IF EXISTS `default_schema`.`taxonclassification` ;
|
| 301 |
|
|
|
| 302 |
|
|
CREATE TABLE IF NOT EXISTS `default_schema`.`taxonclassification` (
|
| 303 |
|
|
`taxonclassification_id` INT NOT NULL ,
|
| 304 |
|
|
`taxonconcept_id` INT(11) NOT NULL ,
|
| 305 |
|
|
`parent_taxonconcept_id` INT(11) NOT NULL ,
|
| 306 |
|
|
PRIMARY KEY (`taxonclassification_id`) ,
|
| 307 |
|
|
INDEX `fk_taxonclassification_taxonconcept1` (`taxonconcept_id` ASC) ,
|
| 308 |
|
|
INDEX `fk_taxonclassification_taxonconcept2` (`parent_taxonconcept_id` ASC) ,
|
| 309 |
|
|
CONSTRAINT `fk_taxonclassification_taxonconcept1`
|
| 310 |
|
|
FOREIGN KEY (`taxonconcept_id` )
|
| 311 |
|
|
REFERENCES `default_schema`.`taxonconcept` (`taxonconcept_id` )
|
| 312 |
|
|
ON DELETE NO ACTION
|
| 313 |
|
|
ON UPDATE NO ACTION,
|
| 314 |
|
|
CONSTRAINT `fk_taxonclassification_taxonconcept2`
|
| 315 |
|
|
FOREIGN KEY (`parent_taxonconcept_id` )
|
| 316 |
|
|
REFERENCES `default_schema`.`taxonconcept` (`taxonconcept_id` )
|
| 317 |
|
|
ON DELETE NO ACTION
|
| 318 |
|
|
ON UPDATE NO ACTION)
|
| 319 |
|
|
ENGINE = InnoDB;
|
| 320 |
|
|
|
| 321 |
|
|
|
| 322 |
|
|
-- -----------------------------------------------------
|
| 323 |
|
|
-- Table `default_schema`.`taxonclassification_reference`
|
| 324 |
|
|
-- -----------------------------------------------------
|
| 325 |
|
|
DROP TABLE IF EXISTS `default_schema`.`taxonclassification_reference` ;
|
| 326 |
|
|
|
| 327 |
|
|
CREATE TABLE IF NOT EXISTS `default_schema`.`taxonclassification_reference` (
|
| 328 |
|
|
`taxonclassification_reference_id` INT NOT NULL ,
|
| 329 |
|
|
`taxonclassification_id` INT NOT NULL ,
|
| 330 |
|
|
`reference_id` INT NOT NULL ,
|
| 331 |
|
|
`taxonclassification_start` TIMESTAMP NULL ,
|
| 332 |
|
|
`taxonclassification_stop` TIMESTAMP NULL ,
|
| 333 |
|
|
PRIMARY KEY (`taxonclassification_reference_id`) ,
|
| 334 |
|
|
INDEX `fk_taxonclassification_reference_taxonclassification1` (`taxonclassification_id` ASC) ,
|
| 335 |
|
|
INDEX `fk_taxonclassification_reference_reference1` (`reference_id` ASC) ,
|
| 336 |
|
|
CONSTRAINT `fk_taxonclassification_reference_taxonclassification1`
|
| 337 |
|
|
FOREIGN KEY (`taxonclassification_id` )
|
| 338 |
|
|
REFERENCES `default_schema`.`taxonclassification` (`taxonclassification_id` )
|
| 339 |
|
|
ON DELETE NO ACTION
|
| 340 |
|
|
ON UPDATE NO ACTION,
|
| 341 |
|
|
CONSTRAINT `fk_taxonclassification_reference_reference1`
|
| 342 |
|
|
FOREIGN KEY (`reference_id` )
|
| 343 |
|
|
REFERENCES `default_schema`.`reference` (`reference_id` )
|
| 344 |
|
|
ON DELETE NO ACTION
|
| 345 |
|
|
ON UPDATE NO ACTION)
|
| 346 |
|
|
ENGINE = InnoDB;
|
| 347 |
|
|
|
| 348 |
|
|
|
| 349 |
|
|
|
| 350 |
|
|
SET SQL_MODE=@OLD_SQL_MODE;
|
| 351 |
|
|
SET FOREIGN_KEY_CHECKS=@OLD_FOREIGN_KEY_CHECKS;
|
| 352 |
|
|
SET UNIQUE_CHECKS=@OLD_UNIQUE_CHECKS;
|
