moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).
inputs/.geoscrub/Source/map.csv: source__modified_date: updated for current run
fix: bin/map: put template: comment out the "Put template:" label so that the output is valid XML, and displays properly in a browser rather than showing a syntax error
inputs/*/*/test.xml.ref: updated source.shortname for new datasource name, which now starts out with .new suffix
inputs/.geoscrub/Source/map.csv: mapped datasetURL
fix: mappings/VegCore-VegBIEN.csv: source__modified_date: remapped to pubdate instead of datelastmodified because this is actually metadata for the source itself, rather than for the VegBIEN record of the source
fix: inputs/.geoscrub/Source/map.csv: source__modified_date: use the mtime of the CSV file instead, since this is closer to the actual version of the biengeo code at the time it was run
inputs/.geoscrub/Source/map.csv: mapped source__modified_date. note that the test must be run with inputs/.geoscrub/Source/run instead of `make inputs/.geoscrub/Source/test` to add these metadata columns to the staging table.
mappings/VegCore.htm: regenerated from wiki. added source__version (= edition), source__modified_date.
mappings/VegCore-VegBIEN.csv: mapped edition
bugfix: inputs/.geoscrub/{Source,geoscrub_output}/VegBIEN.csv: switched to the version needed for new-style datasources
inputs/.geoscrub/Source/map.csv: mapped edition (the version), using `svn info derived/biengeo/`
inputs/.geoscrub/: switched to new-style import, using the steps at wiki.vegpath.org/Adding_new-style_import_to_a_datasource
inputs/*/*/map.csv for CSV tables with a row_num column: added missing row_num entry, which is needed by the staging table column renaming to make the order of the map.csv columns match the order in the staging table
bugfix: inputs/*/Source/map.csv: added missing row_num entry, which is needed by the staging table column renaming to make the order of the map.csv columns match the order in the staging table. the staging table column renaming is now used by all Source tables.
bugfix: inputs/*/Source/: use installed staging table (with blank-line data.csv) in order to also work with new-style import. this also fixes a benign diff between the by-row and by-col test outputs, where row-based import would not import the Source/ entries because there was not at least one row in the input. note that in order to ensure that all datasources are properly run, you need to check `svn st|sort` against the datasource schema names to see if any are missing.
inputs/input.Makefile: SVN: add, %/add: */logs: also svn:ignore *.gz, used for compressed log files
inputs/input.Makefile: %/.map.csv.last_cleanup: Run fix_line_endings after canon/translate to standardize Python's \r\n line endings back to \n. This prevents issues with mixed line endings because LibreOffice (and probably Excel) treat all cell-internal line endings as \n but row line endings as whatever the file had, while text editors like jEdit translate all line endings to whatever the autodetected line ending is. (This creates spurious line ending diffs when a map spreadsheet containing multiline cells is edited in a text editor.)
inputs/.geoscrub/import_order.txt: Added Source
inputs/*/Source/map.csv without mappings: Added referenceType, etc. mappings. This also ensures that the source table entry for the datasource will be created before the herbaria list is imported, causing all top-level datasources to sort at the top of the source table.
input.Makefile: SVN: add: Add a Source table to store datasource metadata. This adds a Source table to all herbaria which are listed in .herbaria, and therefore didn't previously need a Source table to indicate their referenceType and sampleType.
