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# Date Author Comment
13635 06/05/2014 03:57 AM Aaron Marcuse-Kubitza

fix: schemas/public_.sql: tnrs_input_name: added ORDER BY to ensure a stable sort order. this also creates better query plans by enabling merge joins.

13634 06/05/2014 03:50 AM Aaron Marcuse-Kubitza

bugfix: schemas/public_.sql: tnrs_input_name: need to exclude unsafe taxon names as a workaround to #935 (TNRS crashes when scrubbing names with two infraspecific epithets)

13633 06/05/2014 03:45 AM Aaron Marcuse-Kubitza

schemas/public_.sql: taxonlabel: added index on taxonomicname to facilitate retrieving rows from tnrs_input_name

13610 06/03/2014 11:36 AM Aaron Marcuse-Kubitza

schemas/public_.sql: sync_*(): renamed to *_modify() to facilitate finding these functions when modifying the corresponding view (using the new naming convention for a view's on-modify function)

13605 06/03/2014 08:56 AM Aaron Marcuse-Kubitza

fix: schemas/public_.sql: sync_*(): use util.copy() instead of CREATE TABLE AS so that table and column comments are also copied. this avoids the need to separately add the same comments to the view and its materialized table.

13602 06/03/2014 08:29 AM Aaron Marcuse-Kubitza

bugfix: schemas/public_.sql: sync_geoscrub_input_to_view(): `CREATE TABLE geoscrub_input AS __`: needs `LIMIT 0`

13600 06/03/2014 08:15 AM Aaron Marcuse-Kubitza

schemas/public_.sql: sync_analytical_stem_to_view(): removed DROP TABLE IF EXISTS because this is now done automatically by util.recreate()

13588 06/02/2014 04:08 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: tnrs_input_name: don't scrub accepted names, as using multiple matches per name no longer provides a single accepted name to scrub. instead, the Accepted_* fields can be whitespace-split to generate the same columns that would have been generated by the scrubbing (and without the overhead of the extra TNRS call).

13542 05/27/2014 10:38 PM Aaron Marcuse-Kubitza

schemas/public_.sql: added 2014-3-11.Jeff_Ott.climatic_range_determinants

13541 05/27/2014 10:17 PM Aaron Marcuse-Kubitza

schemas/public_.sql: analytical_stem_view: added scrubbed_taxon_name_with_author, needed by Jeff Ott's analysis (wiki.vegpath.org/Data_requests)

13539 05/27/2014 10:09 PM Aaron Marcuse-Kubitza

schemas/public_.sql: added scrubbed_specific_epithet, scrubbed_species_binomial, which are needed by Jeff Ott's analysis (wiki.vegpath.org/Data_requests)

13538 05/27/2014 10:08 PM Aaron Marcuse-Kubitza

fix: schemas/public_.sql: sync_analytical_stem_to_view(): removed fkey to source.shortname because this prevents reloading individual datasources

13536 05/27/2014 03:27 AM Aaron Marcuse-Kubitza

schemas/public_.sql: added scrubbed_specific_epithet, scrubbed_species_binomial, which are needed by Jeff Ott's analysis (wiki.vegpath.org/Data_requests)

13534 05/27/2014 12:33 AM Aaron Marcuse-Kubitza

schemas/public_.sql: analytical_stem_view: scrubbed_morphospecies_binomial: use new taxon_scrub.scrubbed_morphospecies_binomial

13522 05/23/2014 03:57 PM Aaron Marcuse-Kubitza

bugfix: schemas/public_.sql: _plots_20_tnrs_names: verbatim_name_with_author: use taxonverbatim.taxonomicname rather than taxonlabel.taxonomicname

13512 05/21/2014 05:50 PM Aaron Marcuse-Kubitza

fix: schemas/util.sql: force_recreate(): renamed to just recreate(), because "force" normally implies that things will be deleted, which this function does not do

13511 05/21/2014 05:49 PM Aaron Marcuse-Kubitza

fix: schemas/public_.sql: _plots_20_tnrs_names: fixed order of tnrs_taxonomic_status, tnrs_accepted_name_family

13510 05/21/2014 04:45 PM Aaron Marcuse-Kubitza

schemas/public_.sql: _plots_20_tnrs_names: added tnrs_taxonomic_status, as requested in issue #915

13509 05/21/2014 04:34 PM Aaron Marcuse-Kubitza

schemas/public_.sql: analytical_stem_view: taxonomic_status: don't filter with map_taxonomic_status() anymore since this is now done by "TNRS"."MatchedTaxon"

13503 05/21/2014 04:13 AM Aaron Marcuse-Kubitza

bugfix: inputs/.TNRS/schema.sql: map_taxonomic_status(): need to use accepted name instead of scrubbed name (which also includes no-opinion names), as described at http://wiki.vegpath.org/2013-11-14_conference_call#taxonomic-fields. this used to be the accepted name, but got switched when the concatenated name was also used to store the matched name for no-opinion names.

13502 05/21/2014 01:50 AM Aaron Marcuse-Kubitza

schemas/public_.sql: _plots_20_tnrs_names: use accepted_morphospecies_binomial, which is now available directly in the TNRS results, instead of just the morphospecies_suffix, as requested in issue #915

13442 05/13/2014 03:50 AM Aaron Marcuse-Kubitza

bugfix: schemas/public_.sql: plots_20_tnrs_names: tnrs_accepted*: use new accepted_*, not scrubbed_*, as scrubbed_* does not contain only the accepted name (as implied by the tnrs_accepted_* column name)

13440 05/13/2014 03:28 AM Aaron Marcuse-Kubitza

bugfix: schemas/public_.sql: _plots_20_tnrs_names: morphospeciesSuffix must still be called morphospecies_suffix, not taxon_morphospecies, because that column has not been updated to the taxon_morphospecies yet (fixes r13435)

13435 05/12/2014 04:28 PM Aaron Marcuse-Kubitza

schemas/public_.sql: _plots_20_tnrs_names: changed to set of columns requested by Martha

13433 05/10/2014 09:17 PM Aaron Marcuse-Kubitza

schemas/public_.sql: _plots_20_tnrs_names: added morphospecies suffix in order to also validate it

13432 05/10/2014 09:13 PM Aaron Marcuse-Kubitza

schemas/public_.sql: _plots_20_tnrs_names: added verbatim name in order to also validate the formation of the concatenated name

13431 05/10/2014 08:49 PM Aaron Marcuse-Kubitza

schemas/public_.sql: merged _plots_20_tnrs_input_names, _plots_21_tnrs_output_names into _plots_20_tnrs_names so the input and output names can be compared side-by-side

13398 05/03/2014 01:37 AM Aaron Marcuse-Kubitza

schemas/public_.sql: _plots_20_tnrs_input_names, _plots_21_tnrs_output_names: added Brad's comments

13394 05/02/2014 11:34 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: _plots_21_tnrs_output_names: use scrubbed_unique_taxon_name (concatenated output name) because this is more similar to the concatenated name used in _plots_20_tnrs_input_names

13390 05/02/2014 10:01 PM Aaron Marcuse-Kubitza

bugfix: schemas/public_.sql: _plots_21_tnrs_output_names: need to use TNRS output rather than input name

13389 05/02/2014 09:54 PM Aaron Marcuse-Kubitza

schemas/public_.sql: added _plots_20_tnrs_input_names, _plots_21_tnrs_output_names

13388 05/02/2014 06:17 PM Aaron Marcuse-Kubitza

schemas/public_.sql: public_validations: schema comment: documented how to run just the output queries on a particular datasource

13387 05/02/2014 04:53 PM Aaron Marcuse-Kubitza

fix: schemas/public_.sql: rm_all_queries(): also remove output-only result tables

13386 05/02/2014 04:50 PM Aaron Marcuse-Kubitza

schemas/public_.sql: query_view_regexp(): also match auxiliary tables

13385 05/02/2014 04:14 PM Aaron Marcuse-Kubitza

schemas/public_.sql: added remake_output_tables(datasource_schema, prefix)

13383 05/01/2014 10:38 PM Aaron Marcuse-Kubitza

schemas/public_.sql: added output_queries(prefix)

13382 05/01/2014 10:27 PM Aaron Marcuse-Kubitza

schemas/public_.sql: validation_views(): added prefix param, which can be used for additional subsetting

13381 05/01/2014 10:13 PM Aaron Marcuse-Kubitza

schemas/public_.sql: query_relations(): removed no longer used max_prefix_len default param

13380 05/01/2014 10:05 PM Aaron Marcuse-Kubitza

schemas/public_.sql: query_relations(): use new public_validations.truncated_prefixed_name_regexp(), which does not require passing in a max_prefix_len

13379 05/01/2014 10:03 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: added public_validations.truncated_prefixed_name_regexp(), which does not require passing in a max_prefix_len

13378 05/01/2014 08:55 PM Aaron Marcuse-Kubitza

schemas/public_.sql: rm_output_queries(), validation_views(): use public_validations.query_view_regexp()

13377 05/01/2014 08:42 PM Aaron Marcuse-Kubitza

schemas/public_.sql: added public_validations.query_view_regexp()

13376 05/01/2014 08:06 PM Aaron Marcuse-Kubitza

bugfix: schemas/public_.sql: public_validations.rm_output_queries(): default regexp needs to be anchored at beginning of string, and should match the regexp in public_validations.validation_views()

13356 04/30/2014 05:36 PM Aaron Marcuse-Kubitza

schemas/public_.sql: _km_to_m(): made it a wrapper around util._km_to_m() so this function is only in one place

13154 04/17/2014 02:39 AM Aaron Marcuse-Kubitza

schemas/Makefile: vegbien.sql: also include geoscrub, TNRS schemas, as requested in the 2014-04-10 conference call (wiki.vegpath.org/2014-04-10_conference_call#VegBIEN-schema). this involves having a separate public_.sql file for restoring the public schema.