bugfix: web/links/index.htm: updated to Firefox bookmarks: Mac: automatic restart on power loss: also need to disable the UPSShutdownAtLevel/UPSShutdownAtMinutesLeft functions because an orderly shutdown prevents the computer from auto-restarting on power loss. Bookmarks Toolbar: reordered links to put those most relevant to VegBIEN users first.
web/links/index.htm: updated to Firefox bookmarks: added bash shellshock links. LibreOffice: added steps to convert files from the command line.
web/links/index.htm: updated to Firefox bookmarks: Roundtable: added links for Roundtable on "obstacles faced by researchers who reuse, share and manage data, and strategies for overcoming them"
web/links/index.htm: updated to Firefox bookmarks: Mac: added link for VNC client. extended attributes: added link for chflags.
web/links/index.htm: updated to Firefox bookmarks: removed broken favicons
web/links/index.htm: updated to Firefox bookmarks: updated favicons
web/links/index.htm: updated to Firefox bookmarks: categorized uncategorized bookmarks
web/links/index.htm: updated to Firefox bookmarks: local machine phpPgAdmin: removed this so the Mac won't get woken up on network access whenever someone opens the links page, which attempts to load the favicon from the local machine. the previous solution of manually deleting the favicon (r13406) doesn't work because the favicon will just get re-added whenever this bookmark is visited.
web/links/index.htm: updated to Firefox bookmarks: find: added instructions for searching by <>, not just =
bugfix: web/BIEN3/Redmine/.htaccess: subpath redirect: also redirect dirs, so that empty-subdir main-page redirects (eg. wiki.vegpath.org) work properly
bugfix: web/BIEN3/Redmine/.htaccess: main page should continue to redirect to wiki, not Redmine project page
web/links/index.htm: updated to Firefox bookmarks: added instructions for how to enable automatic restart on power loss for the UPS (which isn't accessible in the GUI)
removed no longer used web/BIEN3/Redmine/main/. use Redmine/!__ instead.
web/BIEN3/Redmine/issues/.htaccess: perform .. redirects using new ! prefix
web/BIEN3/Redmine/.htaccess: enable redirects that avoid using a subdir's .htaccess
web/BIEN3/Redmine/wiki/.htaccess: removed no longer needed ignore_fs, since the .htaccess does not have RewriteRules that would need this in a RewriteCond
web/BIEN3/Redmine/issues/.htaccess: main issues page: added default filter conditions
bugfix: web/BIEN3/Redmine/issues/.htaccess: need to redirect to separate URL for individual issues, because they are not located under the issues/ subdir in Redmine
added web/.issues symlink and dest dir (needed because Apache does not support dangling symlinks)
web/BIEN3/Redmine/wiki/.htaccess: documented that this dir is needed because Apache does not support dangling symlinks
bugfix: web/.htaccess: need to expand top-level symlinks to avoid RewriteBase issues
web/main.conf: added RewriteMap for readlink
added web/readlink
web/BIEN3/Redmine/wiki/.htaccess: just use this dir as symlink dest, since the dir name is the same as the URL path within Redmine
web/.htaccess: don't rewrite existing files/dirs: allow forcing rewrite of existing things with %{ENV:ignore_fs}
web/BIEN3/Redmine/svn-web/.htaccess: use Redmine/ instead of main/ subdir
web/BIEN3/Redmine/.htaccess: point this to the Redmine root instead of to the wiki, to avoid the need to append /main
web/links/index.htm: updated to Firefox bookmarks: updated to use frenzy instead of starscream
**: updated to use the local machine's new hostname, frenzy
web/links/index.htm: updated to Firefox bookmarks: added links for SSD vs. HDD reliability
web/links/index.htm: updated to Firefox bookmarks: VirtualBox: performance: added that context-switching also imposes an overhead, in addition to sandboxing.
web/links/index.htm: updated to Firefox bookmarks: BIEN: added list of machines this has been tested on. VirtualBox: added links to performance considerations of running in a VM.
web/username_prefix.php: substitutions: also support "" because Postgres doubles " to escape them
web/username_prefix.php: added support for substitutions ( x."_y@url -> x.x_y@url ), which can be used when a table name is repeated in a column name
added web/people/Brad_Boyle/morphosp symlink to morphospecies
added web/people/Brad_Boyle/morphospecies redirect to Morphospecies and scope.eml.txt
added web/people/Brad_Boyle/Morphospecies and scope.eml.txt symlink
added web/people/Brad_Boyle/TNRS redirect to Modifications to procedure to scrubbing names using TNRS.docx
added web/people/Brad_Boyle/Modifications to procedure to scrubbing names using TNRS.docx symlink
web/username_prefix.php: transposes: removed recommendation for vertical alignment because different quoting syntaxes, etc. make it difficult to have a consistent alignment anyway
web/username_prefix.php: remove padding used to visually separate elements: documented that this leaves embedded _ (eg. x_y) untouched
web/username_prefix.php: remove padding used to visually separate elements: documented that this also removes a leading __ that indicates an internal field
web/links/index.htm: updated to Firefox bookmarks: Quick links: added VegBIEN data dictionary spreadsheet, TNRS data dictionary.
fix: web/username_prefix.php: transposes: changed recommended syntax to y~x@url so that _y~ lines up vertically with [y] paths
web/username_prefix.php: removed special category comments syntax because this is now handled by transposes and insertion comments
web/username_prefix.php: added support for transposes ( y~x_@url -> x_y@url , Y~x@url -> xY@url ), which can be used to put the category in a column name first without duplicating the category
web/username_prefix.php: removed linewraps code because Google spreadsheets no longer supports wrapping on a - , and because a shorter syntax for category comments is now available
web/username_prefix.php: category comments: moved _-_ outside [] in comparison example since it will be deleted separately
bugfix: web/username_prefix.php: category comments: need /__/ around regexp
web/username_prefix.php: category comments: added support for a shorter syntax than [x_-_]y@url : x+y@url -> y@url
web/links/index.htm: updated to Firefox bookmarks: WebEx: added steps to join a test meeting. pg_restore: documented that you need to create the schema before you restore into it, or else you will get a cryptic error message that it's using pg_catalog instead. added Homebrew links, including instructions for setting psycopg2 up with it. added PostGIS links. username URLs: documented how to enable these in Internet Explorer. TWiki: documented what to do when moving the TWiki install dir.
bugfix: web/.phpPgAdmin/.htaccess: : handlers: use `chain` to only run them when the RewriteRule they apply to is run
web/.phpPgAdmin/.htaccess: schema : handler: removed `env=subject:schema` because that has already been set
web/.phpPgAdmin/.htaccess: tables: added : suffix handler
bugfix: web/.phpPgAdmin/.htaccess: view : match: moved to right after `view=` because it only applies to views, not functions
web/.phpPgAdmin/.htaccess: schema: page: indicate by prefixing with : to avoid needing to explicitly list all possible pages
web/.phpPgAdmin/.htaccess: table: action: indicate by prefixing with : to avoid needing to explicitly list all possible actions
web/util.js: removed no longer used parse_dot_path(), etc. this is handled by web/.htaccess instead.
web/index.php: Brad: added attribution/
web/index.php: removed no longer used PHP redirects. these are now handled by Apache .htaccess files instead.
web/people/Brad_Boyle/data_provenance: abbreviated to provenance to enable shorter URLs
added web/people/Brad_Boyle/identifiers
bugfix: web/index.php: Brad: updated resource names to match filesystem
bugfix: web/index.php: Brad: fixed URL base
web/index.php: sources: reordered/recategorized to match the subdirs and wiki.vegpath.org/VegCore
merged inputs/VegBIEN into schemas/VegBIEN, since for the purposes of the data dictionary URLs, VegBIEN is primarily an exchange schema
added web/people/Brad_Boyle/identifier_examples, which is used by the VegBIEN data dictionary
placed web/BIEN3/TWiki/lib/LocalSite.cfg under version control because it contains absolute paths that need to be maintained
web/main.conf: updated paths
web/people/Brad_Boyle/*/.htaccess: set the destination filename using RewriteRule env, to allow escaping " " with "\ " instead of the difficult-to-read "\%20"
web/people/Brad_Boyle/*/.htaccess: use relative paths to new symlinks to avoid hardcoding paths
web/BIEN3/TWiki/twiki.conf: updated paths
web/people/Brad_Boyle/: added symlinks to Brad's files that are used in the data dictionaries
schemas/VegBIEN/attribution/: moved into schemas/VegBIEN/planning/
schemas/VegBIEN/: moved Redmine/, TWiki/ to web/BIEN3/ since they relate to the BIEN3 project as a whole, not just the database
web/BIEN3/Redmine/svn/.htaccess: removed unneeded RewriteBase because this does not use a relative redirect with ../
web/BIEN3: link to Redmine instead of directly to the wiki, since the Redmine/ dir should manage where BIEN3 default-redirects to
web/.fs: changed to point directly to the svn root, so that the VegBIEN dir does not contain any recursive symlinks
web/links/index.htm: updated to Firefox bookmarks: oXygen XML editor: added download link for the version (13.2) that works with NCEAS's license. bash: added fix to enable Ctrl+Arrow to work. GVFS: added links for file permissions bug. iPlant: added Atmosphere/Data Store links. Quick links: updated vegpath.org link to `vegpath.org.`.
web/username_prefix.php: username/password prompt message: added instructions to always append "." when visiting the homepage of the site ("vegpath.org.")
web/username_prefix.php: deletion comments: require ... strikethrough on both () to avoid ambiguity when the deleted part starts or ends with -
web/username_prefix.php: deletion comments: also support strikethrough syntax for clarity: (c_)x@url -> c_x@url
web/username_prefix.php: insertion comments: documented that the semantic meaning of the [] portion also applies, even though it's not included in the linked term name
web/username_prefix.php: added support for deletion comments of the form (c_)x(_d)@url -> c_x_d@url . deletion indicates that the semantic meaning of the () portion does not apply, even though it's included in the linked term name.
web/username_prefix.php: comments: use [] instead of () because in writing, [] denotes insertion, while () (as an editing mark) denotes something to remove
bugfix: web/index.php: fixed bug where full directory index would not display correctly if invoked as /index.php instead of / (caused by incorrect URL)
web/username_prefix.php: word-wraps: renamed to linewraps
web/username_prefix.php: added support for word-wraps of the form x_-_.y@url -> x.y@url (the _ are needed to work in Google spreadsheets)
bugfix: web/username_prefix.php: comments: need to use syntax that doesn't use : because Firefox will not update the "password" for the website with the new value after the : . the new syntax use () instead.
