Revision 10260
Added by Aaron Marcuse-Kubitza almost 11 years ago
| test.xml.ref | ||
|---|---|---|
| 7 | 7 |
<next>parent_id</next> |
| 8 | 8 |
<path> |
| 9 | 9 |
<location> |
| 10 |
<authorlocationcode>$specimenid</authorlocationcode>
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|
| 10 |
<authorlocationcode>$dataProviderRecordID</authorlocationcode>
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|
| 11 | 11 |
<elevation_m> |
| 12 | 12 |
<_avg> |
| 13 |
<1>$minimumelevation</1>
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|
| 14 |
<2>$maximumelevation</2>
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|
| 13 |
<1>$minimumElevationInMeters</1>
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|
| 14 |
<2>$maximumElevationInMeters</2>
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|
| 15 | 15 |
</_avg> |
| 16 | 16 |
</elevation_m> |
| 17 | 17 |
<iscultivated><_locationnarrative_is_cultivated><locationnarrative>$locality</locationnarrative></_locationnarrative_is_cultivated></iscultivated> |
| ... | ... | |
| 19 | 19 |
<taxonoccurrence> |
| 20 | 20 |
<aggregateoccurrence> |
| 21 | 21 |
<plantobservation> |
| 22 |
<authorplantcode>$collectionnumber</authorplantcode>
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|
| 23 |
<reproductivecondition>$ecologicalcondition</reproductivecondition>
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|
| 22 |
<authorplantcode>$collectorNumber</authorplantcode>
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|
| 23 |
<reproductivecondition>$reproductiveCondition</reproductivecondition>
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|
| 24 | 24 |
<specimenreplicate> |
| 25 |
<collectionnumber>$collectionnumber</collectionnumber>
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|
| 25 |
<collectionnumber>$collectorNumber</collectionnumber>
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|
| 26 | 26 |
<institution_id> |
| 27 | 27 |
<sourcelist> |
| 28 |
<name>$acronyms</name>
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|
| 28 |
<name>$specimenHolderInstitutions</name>
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|
| 29 | 29 |
<sourcename> |
| 30 | 30 |
<name> |
| 31 | 31 |
<_split> |
| 32 | 32 |
<separator>[,;] *</separator> |
| 33 |
<value>$acronyms</value>
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|
| 33 |
<value>$specimenHolderInstitutions</value>
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|
| 34 | 34 |
</_split> |
| 35 | 35 |
</name> |
| 36 | 36 |
</sourcename> |
| 37 | 37 |
</sourcelist> |
| 38 | 38 |
</institution_id> |
| 39 |
<sourceaccessioncode>$specimenid</sourceaccessioncode>
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|
| 39 |
<sourceaccessioncode>$dataProviderRecordID</sourceaccessioncode>
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|
| 40 | 40 |
</specimenreplicate> |
| 41 | 41 |
</plantobservation> |
| 42 | 42 |
</aggregateoccurrence> |
| 43 |
<collector_id><party><fullname>$collectorstring</fullname></party></collector_id>
|
|
| 44 |
<iscultivated>$iscultivated</iscultivated>
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|
| 45 |
<sourceaccessioncode>$specimenid</sourceaccessioncode>
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|
| 43 |
<collector_id><party><fullname>$recordedBy</fullname></party></collector_id>
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|
| 44 |
<iscultivated>$cultivated</iscultivated> |
|
| 45 |
<sourceaccessioncode>$dataProviderRecordID</sourceaccessioncode>
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|
| 46 | 46 |
<taxondetermination> |
| 47 |
<party_id><party><fullname>$determinedby</fullname></party></party_id>
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|
| 47 |
<party_id><party><fullname>$identifiedBy</fullname></party></party_id>
|
|
| 48 | 48 |
<taxonverbatim_id> |
| 49 | 49 |
<taxonverbatim> |
| 50 | 50 |
<taxonlabel_id> |
| 51 | 51 |
<taxonlabel> |
| 52 | 52 |
<parent_id> |
| 53 | 53 |
<taxonlabel> |
| 54 |
<rank>$rankabbreviation</rank>
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|
| 54 |
<rank>$taxonRank</rank>
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|
| 55 | 55 |
<parent_id> |
| 56 | 56 |
<taxonlabel> |
| 57 | 57 |
<rank>cultivar</rank> |
| ... | ... | |
| 67 | 67 |
<parent_id> |
| 68 | 68 |
<taxonlabel> |
| 69 | 69 |
<rank>species</rank> |
| 70 |
<taxonepithet>$speciesnamepart</taxonepithet>
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|
| 70 |
<taxonepithet>$specificEpithet</taxonepithet>
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|
| 71 | 71 |
<parent_id> |
| 72 | 72 |
<taxonlabel> |
| 73 | 73 |
<rank>genus</rank> |
| 74 |
<taxonepithet>$genusnamepart</taxonepithet>
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|
| 74 |
<taxonepithet>$genus</taxonepithet> |
|
| 75 | 75 |
<parent_id> |
| 76 | 76 |
<taxonlabel> |
| 77 | 77 |
<rank>family</rank> |
| ... | ... | |
| 90 | 90 |
</parent_id> |
| 91 | 91 |
</taxonlabel> |
| 92 | 92 |
</parent_id> |
| 93 |
<taxonepithet>$epithet</taxonepithet>
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|
| 93 |
<taxonepithet>$infraspecificEpithet</taxonepithet>
|
|
| 94 | 94 |
</taxonlabel> |
| 95 | 95 |
</parent_id> |
| 96 |
<rank>$rankabbreviation</rank>
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|
| 97 |
<sourceaccessioncode>$determinationnameid</sourceaccessioncode>
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|
| 96 |
<rank>$taxonRank</rank>
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| 97 |
<sourceaccessioncode>$scientificNameID</sourceaccessioncode>
|
|
| 98 | 98 |
<taxonomicname> |
| 99 | 99 |
<_merge_prefix> |
| 100 | 100 |
<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
| 101 | 101 |
<value> |
| 102 | 102 |
<_alt> |
| 103 |
<1>$fullname</1>
|
|
| 103 |
<1>$scientificName</1>
|
|
| 104 | 104 |
<2> |
| 105 | 105 |
<_alt> |
| 106 |
<1>$name</1>
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|
| 106 |
<1>$taxonName</1>
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|
| 107 | 107 |
<2> |
| 108 | 108 |
<_join_words> |
| 109 |
<2><_filter_genus><value>$genusnamepart</value></_filter_genus></2>
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|
| 110 |
<3>$speciesnamepart</3>
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|
| 109 |
<2><_filter_genus><value>$genus</value></_filter_genus></2> |
|
| 110 |
<3>$specificEpithet</3>
|
|
| 111 | 111 |
<5> |
| 112 | 112 |
<_join_words> |
| 113 | 113 |
<1> |
| 114 | 114 |
<_if name="if has infraspecificEpithet"> |
| 115 |
<cond>$epithet</cond>
|
|
| 116 |
<then>$rankabbreviation</then>
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|
| 115 |
<cond>$infraspecificEpithet</cond>
|
|
| 116 |
<then>$taxonRank</then>
|
|
| 117 | 117 |
</_if> |
| 118 | 118 |
</1> |
| 119 |
<2>$epithet</2>
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|
| 119 |
<2>$infraspecificEpithet</2>
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|
| 120 | 120 |
</_join_words> |
| 121 | 121 |
</5> |
| 122 | 122 |
</_join_words> |
| ... | ... | |
| 130 | 130 |
</taxonlabel> |
| 131 | 131 |
</taxonlabel_id> |
| 132 | 132 |
<family>$family</family> |
| 133 |
<genus>$genusnamepart</genus>
|
|
| 134 |
<specific_epithet>$speciesnamepart</specific_epithet>
|
|
| 135 |
<taxonname>$name</taxonname>
|
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| 136 |
<taxonomicname>$fullname</taxonomicname>
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|
| 137 |
<verbatimrank>$rankabbreviation</verbatimrank>
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| 133 |
<genus>$genus</genus> |
|
| 134 |
<specific_epithet>$specificEpithet</specific_epithet>
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| 135 |
<taxonname>$taxonName</taxonname>
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| 136 |
<taxonomicname>$scientificName</taxonomicname>
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| 137 |
<verbatimrank>$taxonRank</verbatimrank>
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|
| 138 | 138 |
</taxonverbatim> |
| 139 | 139 |
</taxonverbatim_id> |
| 140 | 140 |
<determinationdate> |
| ... | ... | |
| 143 | 143 |
<_nullIf> |
| 144 | 144 |
<null>0</null> |
| 145 | 145 |
<type>float</type> |
| 146 |
<value>$determinationyear</value>
|
|
| 146 |
<value>$yearIdentified</value>
|
|
| 147 | 147 |
</_nullIf> |
| 148 | 148 |
</year> |
| 149 | 149 |
</_date> |
| 150 | 150 |
</determinationdate> |
| 151 |
<taxonfit>$qualifier</taxonfit>
|
|
| 151 |
<taxonfit>$identificationQualifier</taxonfit>
|
|
| 152 | 152 |
</taxondetermination> |
| 153 | 153 |
</taxonoccurrence> |
| 154 | 154 |
</locationevent> |
| 155 | 155 |
<locationnarrative> |
| 156 | 156 |
<_merge> |
| 157 | 157 |
<1>$locality</1> |
| 158 |
<4>$notes</4>
|
|
| 158 |
<4>$locationRemarks</4>
|
|
| 159 | 159 |
</_merge> |
| 160 | 160 |
</locationnarrative> |
| 161 | 161 |
<locationplace> |
| ... | ... | |
| 167 | 167 |
<_nullIf> |
| 168 | 168 |
<null>0</null> |
| 169 | 169 |
<type>float</type> |
| 170 |
<value>$minlatdecdeg</value>
|
|
| 170 |
<value>$decimalLatitude</value>
|
|
| 171 | 171 |
</_nullIf> |
| 172 | 172 |
</latitude_deg> |
| 173 | 173 |
<longitude_deg> |
| 174 | 174 |
<_nullIf> |
| 175 | 175 |
<null>0</null> |
| 176 | 176 |
<type>float</type> |
| 177 |
<value>$minlongdecdeg</value>
|
|
| 177 |
<value>$decimalLongitude</value>
|
|
| 178 | 178 |
</_nullIf> |
| 179 | 179 |
</longitude_deg> |
| 180 | 180 |
</coordinates> |
| 181 | 181 |
</coordinates_id> |
| 182 | 182 |
<continent>$continent</continent> |
| 183 | 183 |
<country>$country</country> |
| 184 |
<county>$lower</county>
|
|
| 184 |
<county>$county</county>
|
|
| 185 | 185 |
<matched_place_id> |
| 186 | 186 |
<place> |
| 187 | 187 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
| ... | ... | |
| 192 | 192 |
<_nullIf> |
| 193 | 193 |
<null>0</null> |
| 194 | 194 |
<type>float</type> |
| 195 |
<value>$minlatdecdeg</value>
|
|
| 195 |
<value>$decimalLatitude</value>
|
|
| 196 | 196 |
</_nullIf> |
| 197 | 197 |
</latitude_deg> |
| 198 | 198 |
<longitude_deg> |
| 199 | 199 |
<_nullIf> |
| 200 | 200 |
<null>0</null> |
| 201 | 201 |
<type>float</type> |
| 202 |
<value>$minlongdecdeg</value>
|
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| 202 |
<value>$decimalLongitude</value>
|
|
| 203 | 203 |
</_nullIf> |
| 204 | 204 |
</longitude_deg> |
| 205 | 205 |
</coordinates> |
| 206 | 206 |
</coordinates_id> |
| 207 | 207 |
<country>$country</country> |
| 208 |
<county>$lower</county>
|
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| 209 |
<stateprovince>$upper</stateprovince>
|
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| 208 |
<county>$county</county>
|
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| 209 |
<stateprovince>$stateProvince</stateprovince>
|
|
| 210 | 210 |
</place> |
| 211 | 211 |
</matched_place_id> |
| 212 |
<stateprovince>$upper</stateprovince>
|
|
| 212 |
<stateprovince>$stateProvince</stateprovince>
|
|
| 213 | 213 |
</place> |
| 214 | 214 |
</place_id> |
| 215 | 215 |
</locationplace> |
Also available in: Unified diff
inputs/*/ which do not contain any explicit collisions (wiki.vegpath.org/2013-06-27_conference_call#To-do-for-Aaron > #3.2 > the following datasources ...): switched to new-style import, which adds the staging table column renaming