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Revision 10419

Added by Aaron Marcuse-Kubitza almost 11 years ago

inputs/CTFS/: switched to new-style import, using the steps at wiki.vegpath.org/Adding_new-style_import_to_a_datasource

View differences:

test.xml.ref
7 7 
                <next>parent_id</next>
8 8 
                <path>
9 9 
                    <location>
10 
                        <parent_id><location><sourceaccessioncode>$PlotID</sourceaccessioncode></location></parent_id>
11 
                        <authorlocationcode>$QuadratID</authorlocationcode>
10 
                        <parent_id><location><sourceaccessioncode>$locationID</sourceaccessioncode></location></parent_id>
11 
                        <authorlocationcode>$subplot</authorlocationcode>
12 12 
                        <locationevent>
13 13 
                            <parent_id>
14 14 
                                <locationevent>
......
16 16 
                                        <location>
17 17 
                                            <sourceaccessioncode>
18 18 
                                                <_if name="if subplot">
19 
                                                    <cond>$QuadratID</cond>
20 
                                                    <then>$PlotID</then>
19 
                                                    <cond>$subplot</cond>
20 
                                                    <then>$locationID</then>
21 21 
                                                </_if>
22 22 
                                            </sourceaccessioncode>
23 23 
                                        </location>
24 24 
                                    </location_id>
25 
                                    <sourceaccessioncode>$CensusID</sourceaccessioncode>
25 
                                    <sourceaccessioncode>$eventID</sourceaccessioncode>
26 26 
                                </locationevent>
27 27 
                            </parent_id>
28 28 
                            <taxonoccurrence>
29 29 
                                <aggregateoccurrence>
30 30 
                                    <plantobservation>
31 
                                        <sourceaccessioncode>$MeasureID</sourceaccessioncode>
31 
                                        <sourceaccessioncode>$individualID</sourceaccessioncode>
32 32 
                                        <stemobservation>
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                                            <authorstemcode>$StemID</authorstemcode>
34 
                                            <diameterbreastheight_m><_cm_to_m><value>$DBH</value></_cm_to_m></diameterbreastheight_m>
33 
                                            <authorstemcode>$authorStemCode</authorstemcode>
34 
                                            <diameterbreastheight_m><_cm_to_m><value>$diameterBreastHeight_cm</value></_cm_to_m></diameterbreastheight_m>
35 35 
                                            <tag>$tag</tag>
36 
                                            <xposition_m>$x</xposition_m>
37 
                                            <yposition_m>$y</yposition_m>
36 
                                            <xposition_m>$organismX_m</xposition_m>
37 
                                            <yposition_m>$organismY_m</yposition_m>
38 38 
                                        </stemobservation>
39 39 
                                    </plantobservation>
40 40 
                                </aggregateoccurrence>
41 41 
                                <authortaxoncode>$tag</authortaxoncode>
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                                <sourceaccessioncode>$MeasureID</sourceaccessioncode>
42 
                                <sourceaccessioncode>$individualID</sourceaccessioncode>
43 43 
                                <taxondetermination>
44 44 
                                    <taxonverbatim_id>
45 45 
                                        <taxonverbatim>
......
59 59 
                                                                                    <parent_id>
60 60 
                                                                                        <taxonlabel>
61 61 
                                                                                            <rank>subspecies</rank>
62 
                                                                                            <taxonepithet>$SubSpeciesName</taxonepithet>
62 
                                                                                            <taxonepithet>$subspecies</taxonepithet>
63 63 
                                                                                            <parent_id>
64 64 
                                                                                                <taxonlabel>
65 65 
                                                                                                    <rank>species</rank>
66 
                                                                                                    <taxonepithet>$SpeciesName</taxonepithet>
66 
                                                                                                    <taxonepithet>$specificEpithet</taxonepithet>
67 67 
                                                                                                    <parent_id>
68 68 
                                                                                                        <taxonlabel>
69 69 
                                                                                                            <rank>genus</rank>
70 
                                                                                                            <taxonepithet>$Genus</taxonepithet>
70 
                                                                                                            <taxonepithet>$genus</taxonepithet>
71 71 
                                                                                                            <parent_id>
72 72 
                                                                                                                <taxonlabel>
73 73 
                                                                                                                    <rank>family</rank>
74 
                                                                                                                    <taxonepithet>$Family</taxonepithet>
74 
                                                                                                                    <taxonepithet>$family</taxonepithet>
75 75 
                                                                                                                </taxonlabel>
76 76 
                                                                                                            </parent_id>
77 77 
                                                                                                        </taxonlabel>
......
90 90 
                                                    </parent_id>
91 91 
                                                    <taxonomicname>
92 92 
                                                        <_merge_prefix>
93 
                                                            <prefix><_taxon_family_require_std><family>$Family</family></_taxon_family_require_std></prefix>
93 
                                                            <prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix>
94 94 
                                                            <value>
95 95 
                                                                <_join_words>
96 96 
                                                                    <1>
97 97 
                                                                        <_join_words>
98 
                                                                            <2><_filter_genus><value>$Genus</value></_filter_genus></2>
99 
                                                                            <3>$SpeciesName</3>
100 
                                                                            <4>$SubSpeciesName</4>
98 
                                                                            <2><_filter_genus><value>$genus</value></_filter_genus></2>
99 
                                                                            <3>$specificEpithet</3>
100 
                                                                            <4>$subspecies</4>
101 101 
                                                                        </_join_words>
102 102 
                                                                    </1>
103 
                                                                    <2>$SpeciesAuthority</2>
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                                                                    <2>$scientificNameAuthorship</2>
104 104 
                                                                </_join_words>
105 105 
                                                            </value>
106 106 
                                                        </_merge_prefix>
107 107 
                                                    </taxonomicname>
108 108 
                                                </taxonlabel>
109 109 
                                            </taxonlabel_id>
110 
                                            <author>$SpeciesAuthority</author>
111 
                                            <family>$Family</family>
112 
                                            <genus>$Genus</genus>
113 
                                            <specific_epithet>$SpeciesName</specific_epithet>
110 
                                            <author>$scientificNameAuthorship</author>
111 
                                            <family>$family</family>
112 
                                            <genus>$genus</genus>
113 
                                            <specific_epithet>$specificEpithet</specific_epithet>
114 114 
                                        </taxonverbatim>
115 115 
                                    </taxonverbatim_id>
116 116 
                                </taxondetermination>
......
118 118 
                        </locationevent>
119 119 
                        <sourceaccessioncode>
120 120 
                            <_join>
121 
                                <1>$PlotID</1>
122 
                                <2>$QuadratID</2>
121 
                                <1>$locationID</1>
122 
                                <2>$subplot</2>
123 123 
                            </_join>
124 124 
                        </sourceaccessioncode>
125 125 
                    </location>

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