Revision 1044
Added by Aaron Marcuse-Kubitza over 12 years ago
| DwC-VegBIEN.specimens.csv | ||
|---|---|---|
| 14 | 14 |
verbatimLongitude,/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationdetermination[!namedplace_id]/longitude/_alt/2,,82 |
| 15 | 15 |
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationnarrative/_alt/1,,68 |
| 16 | 16 |
verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationnarrative/_alt/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69 |
| 17 |
bien.vegetation,/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,, |
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| 17 |
habitat,/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
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| 18 |
habitat/_merge/1,/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_merge/1,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
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| 19 |
habitat/_merge/2,/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_merge/2,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
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| 18 | 20 |
bien.substrate,/*_id/taxonoccurrence/*_id/locationevent/landscapenarrative,, |
| 19 | 21 |
eventDate,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate,,44 |
| 20 | 22 |
eventDate/_alt/1/_*/date,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/1/_*/date,,44 |
| ... | ... | |
| 23 | 25 |
eventDate/_alt/2/_date/year,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/year,,44 |
| 24 | 26 |
maximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max,,75 |
| 25 | 27 |
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min,,74 |
| 26 |
habitat,"/*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=habitat]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
|
| 27 | 28 |
sex,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26 |
| 28 | 29 |
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate",,120 |
| 29 | 30 |
dateIdentified/_alt/1/_*/date,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/1/_*/date",,120 |
| ... | ... | |
| 42 | 43 |
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143 |
| 43 | 44 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150 |
| 44 | 45 |
fieldNotes,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes",54 |
| 45 |
occurrenceID,"/{:[*_id/reference]/sourceaccessioncode,*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/authorplantcode}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
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| 46 | 46 |
catalogNumber,:[*_id/reference]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
| 47 | 47 |
recordNumber,:[*_id/reference]/collectionnumber/_alt/1,,22 |
| 48 | 48 |
collectionID,:[*_id/reference]/collectionnumber/_alt/2,,9 |
| ... | ... | |
| 50 | 50 |
bien.specimenDescription,:[*_id/reference]/description,, |
| 51 | 51 |
bien.specimenDescription/_merge/1,:[*_id/reference]/description/_merge/1,, |
| 52 | 52 |
"bien.specimenDescription/_merge/2/_label[label=""plant fungus""]/value",":[*_id/reference]/description/_merge/2/_label[label=""plant fungus""]/value",, |
| 53 |
occurrenceID,:[*_id/reference]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
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| 53 | 54 |
recordedBy,:[*_id/reference]/verbatimcollectorname,,23 |
| 54 | 55 |
institutionCode,:[*_id/reference]/{museum_id/party/organizationname/_name/first},,11
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| 55 | 56 |
collectionCode,":[*_id/reference]/{museum_id/party/organizationname/_name/last,collectioncode_dwc}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
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Also available in: Unified diff
NYBG-DwC mappings: Map Vegetation to habitat (merged with Habitat). DwC-VegBIEN mapping: Removed remaining mappings to plantobservation.