Revision 1052
Added by Aaron Marcuse-Kubitza almost 13 years ago
| DwC-VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[bien.datasource=$/_ignore/inLabel]/",VegBIEN:/specimenreplicate,Comments,Order |
| 2 |
country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=""area|country|territory""])/placename",Brad: Required; reject record if this field NULL,63 |
|
| 3 |
stateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=""region|state|province""])/placename",,65 |
|
| 4 |
county,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=county])/placename,,66 |
|
| 2 | 5 |
coordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/coordsaccuracy,,89 |
| 3 | 6 |
coordinatePrecision/_noCV/value,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/coordsaccuracy/_noCV/value,,89 |
| 7 |
footprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/footprintgeometry_dwc,,91 |
|
| 8 |
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,85 |
|
| 9 |
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/latitude/_alt/2/_nullIf:[null=0,type=float]/value",,81 |
|
| 10 |
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,86 |
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| 11 |
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/longitude/_alt/2/_nullIf:[null=0,type=float]/value",,82 |
|
| 12 |
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_alt/1,,68 |
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| 13 |
verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_alt/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69 |
|
| 4 | 14 |
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
|
| 5 | 15 |
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
|
| 6 |
bien.datasource,/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/*_id/reference/shortname/_alt/1,, |
|
| 7 |
country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationdetermination(/*_id/namedplace[placesystem=""area|country|territory""])/placename",Brad: Required; reject record if this field NULL,63 |
|
| 8 |
stateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationdetermination(/*_id/namedplace[placesystem=""region|state|province""])/placename",,65 |
|
| 9 |
county,/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationdetermination(/*_id/namedplace[placesystem=county])/placename,,66 |
|
| 10 |
footprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationdetermination[!namedplace_id]/footprintgeometry_dwc,,91 |
|
| 11 |
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationdetermination[!namedplace_id]/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,85 |
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| 12 |
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationdetermination[!namedplace_id]/latitude/_alt/2/_nullIf:[null=0,type=float]/value",,81 |
|
| 13 |
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationdetermination[!namedplace_id]/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,86 |
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| 14 |
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationdetermination[!namedplace_id]/longitude/_alt/2/_nullIf:[null=0,type=float]/value",,82 |
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| 15 |
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationnarrative/_alt/1,,68 |
|
| 16 |
verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationnarrative/_alt/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69 |
|
| 17 | 16 |
habitat,/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
| 18 | 17 |
habitat/_merge/1,/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_merge/1,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
| 19 | 18 |
habitat/_merge/2,/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_merge/2,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
| ... | ... | |
| 43 | 42 |
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143 |
| 44 | 43 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150 |
| 45 | 44 |
recordedBy,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
| 46 |
catalogNumber,:[*_id/reference]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
|
| 47 |
recordNumber,:[*_id/reference]/collectionnumber/_alt/1,,22 |
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| 48 |
collectionID,:[*_id/reference]/collectionnumber/_alt/2,,9 |
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| 49 |
fieldNumber,:[*_id/reference]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53 |
|
| 50 |
fieldNotes,:[*_id/reference]/description,, |
|
| 51 |
fieldNotes/_merge/1,:[*_id/reference]/description/_merge/1,, |
|
| 52 |
"fieldNotes/_merge/2/_label[label=""plant fungus""]/value",":[*_id/reference]/description/_merge/2/_label[label=""plant fungus""]/value",, |
|
| 53 |
occurrenceID,:[*_id/reference]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
|
| 54 |
institutionCode,:[*_id/reference]/{museum_id/party/organizationname/_name/first},,11
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|
| 55 |
collectionCode,":[*_id/reference]/{museum_id/party/organizationname/_name/last,collectioncode_dwc}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
|
|
| 45 |
fieldNotes,/description,, |
|
| 46 |
fieldNotes/_merge/1,/description/_merge/1,, |
|
| 47 |
"fieldNotes/_merge/2/_label[label=""plant fungus""]/value","/description/_merge/2/_label[label=""plant fungus""]/value",, |
|
| 48 |
institutionCode,/{museum_id/party/organizationname/_name/first},,11
|
|
| 49 |
collectionCode,"/{museum_id/party/organizationname/_name/last,collectioncode_dwc}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
|
|
| 50 |
bien.datasource,:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/*_id/reference/shortname/_alt/1,, |
|
| 51 |
catalogNumber,:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
|
| 52 |
recordNumber,:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
|
| 53 |
collectionID,:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9 |
|
| 54 |
fieldNumber,:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53 |
|
| 55 |
occurrenceID,:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
|
| 56 | 56 |
acceptedNameUsage,,,135 |
| 57 | 57 |
acceptedNameUsageID,,,128 |
| 58 | 58 |
associatedMedia,,,36 |
Also available in: Unified diff
DwC mappings: Mapped datasource name to specimenreplicate.reference instead of location.reference