Revision 10566
Added by Aaron Marcuse-Kubitza almost 11 years ago
| VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
NCU,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments |
| 2 | 2 |
CatalogNumber,"/_if[@name=""if specimen""]/cond/_exists", |
| 3 | 3 |
SpecimenPK,"/_if[@name=""if specimen""]/cond/_exists", |
| 4 |
CatalogSeriesPrefix,"/_if[@name=""if specimen""]/else/source/shortname/_first/1/_alt/1", |
|
| 5 |
OwnerInstitution,"/_if[@name=""if specimen""]/else/source/shortname/_first/1/_alt/2", |
|
| 4 |
CatalogSeriesPrefix,"/_if[@name=""if specimen""]/else/source/shortname/_first/1",= specimen.orig_collection.institution.acronym, specimen.specimenholder_institutions(0).acronym |
|
| 6 | 5 |
SpecimenPK,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/1", |
| 7 | 6 |
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists", |
| 8 | 7 |
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists", |
| 9 | 8 |
SpecimenPK,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists", |
| 10 |
CatalogSeriesPrefix,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then/_first/2/_alt/1", |
|
| 11 |
OwnerInstitution,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then/_first/2/_alt/2", |
|
| 9 |
CatalogSeriesPrefix,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then/_first/2",= specimen.orig_collection.institution.acronym, specimen.specimenholder_institutions(0).acronym |
|
| 12 | 10 |
CollectionGUID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/2", |
| 13 | 11 |
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else", |
| 14 | 12 |
SpecimenPK,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
| ... | ... | |
| 23 | 21 |
firstCollectorRemarks,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else","Actually the collector's number, not remarks" |
| 24 | 22 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists", |
| 25 | 23 |
SpecimenPK,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists", |
| 26 |
CatalogSeriesPrefix,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name/_first/2/_alt/1", |
|
| 27 |
OwnerInstitution,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name/_first/2/_alt/2", |
|
| 28 |
CatalogSeriesPrefix,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_first/2/_split:[separator=""[,;] *""]/value/_alt/1", |
|
| 29 |
OwnerInstitution,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_first/2/_split:[separator=""[,;] *""]/value/_alt/2", |
|
| 24 |
CatalogSeriesPrefix,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name/_first/2",= specimen.orig_collection.institution.acronym, specimen.specimenholder_institutions(0).acronym |
|
| 25 |
CatalogSeriesPrefix,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_first/2/_split:[separator=""[,;] *""]/value",= specimen.orig_collection.institution.acronym, specimen.specimenholder_institutions(0).acronym |
|
| 30 | 26 |
SpecimenPK,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 31 | 27 |
firstCollectorRemarks,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3","Actually the collector's number, not remarks" |
| 32 | 28 |
CurrentScientificNameWithAuthor,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2", |
| ... | ... | |
| 70 | 66 |
LastAnnotationDateVerbatim,,** No join mapping for *LastAnnotationDateVerbatim ** |
| 71 | 67 |
LastAnnotationLabelTaxon,,** No join mapping for *LastAnnotationLabelTaxon ** |
| 72 | 68 |
LastAnnotationRemarks,,** No join mapping for *LastAnnotationRemarks ** |
| 69 |
OwnerInstitution,,** No join mapping for specimenOwner ** = specimen.owner_collection.institution.name |
|
| 73 | 70 |
TypeStatus,,** No join mapping for typeStatus ** |
| 74 | 71 |
database,,** No join mapping for *database ** |
| 75 | 72 |
lastAnnotationAgent,,** No join mapping for *lastAnnotationAgent ** |
Also available in: Unified diff
inputs/NCU/Specimen/map.csv: OwnerInstitution: remapped to specimenOwner rather than specimenHolderInstitutions. OwnerInstitution, CatalogSeriesPrefix: documented the VegCore SQL dotpath (http://wiki.vegpath.org/SQL_dotpaths) that would be used to refer to the field. this specifies the destination field at a much finer level of detail than the one-size-fits-all denormalized name.