Revision 106
Added by Aaron Marcuse-Kubitza about 13 years ago
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#!/bin/bash |
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# Tests map |
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# Usage: env [debug=1] [n=<num-rows>] self
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# Tests map on all input/*.csv
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# Usage: env [n=<num-rows>] self |
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selfDir="$(dirname -- "$0")" |
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cd "$selfDir" |
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test -n "$n" || n=2 |
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let n++ |
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let n++ # include header row
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in=NYBG.csv |
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out=NYBG.xml |
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# Update generated mappings |
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../../mappings/extract_plot_map |
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../../mappings/join_all_vegbank |
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head -"$n" "input/$in"|../map ../../mappings/NYBG-VegX.organisms.csv \ |
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>"output/$out" && diff "accepted_output/$out" "output/$out" |
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test -z "$debug" && toVegbank=map2vegbank || toVegbank=map |
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head -"$n" "input/$in"|"../$toVegbank" \ |
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../../mappings/joins/NYBG-VegBank.organisms.csv |
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for in in input/*.csv; do |
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stem="$(basename -- "${in%.csv}")" # remove extension and dir
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src="${stem%.*}" # before last "."
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type="${stem##*.}" # after last "."
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# Test exporting to XML |
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for fmt in VegX VegBank; do |
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out="$stem.$fmt.xml" |
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head -"$n" "$in"|../map "../../mappings/$src-$fmt.$type.csv" \ |
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>"output/$out" && diff "accepted_output/$out" "output/$out" |
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done |
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# Test exporting to VegBank db |
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head -"$n" "$in"|../map2vegbank "../../mappings/$src-VegBank.$type.csv" |
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done |
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Also available in: Unified diff
test/map: Expanded to include all input CSVs in test/input