Project

General

Profile

« Previous | Next » 

Revision 10604

Added by Aaron Marcuse-Kubitza almost 11 years ago

inputs/UNCC/Specimen/: translated single-column filters to postprocessing derived columns, using the steps at http://wiki.vegpath.org/Adding_new-style_import_to_a_datasource#Translating-filters-to-postprocessing-derived-columns

View differences:

VegBIEN.csv
38 38 
HAVING count(*) > 1
39 39 
-----"
40 40 
collectno,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
41 
cultivated,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/else/_first/1/_alt/1/_map:[*=true]/value","For our purposes, anything non-NULL should be assumed to be cultivated"
42 
campus,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/else/_first/1/_alt/2/_map:[*=true]/value","""this refers to occurrence on the UNCC campus, but I do not know the meaning of the codes. Presumably C = cultivated"" (https://projects.nceas.ucsb.edu/nceas/attachments/download/723/UNCC-validate_rkp_bb_rkp.xlsx#Campus)"
41 
cultivated__main,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/else/_first/1/_alt/1",
42 
cultivated__campus,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/else/_first/1/_alt/2",
43 43 
locality,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1,
44 44 
habitat,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3,
45 45 
collday,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
......
52 52 
loanto,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/6/_label[label=""loaned to""]/value",
53 53 
inorout,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/7/_label[label=""in or out""]/value",
54 54 
collectno,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
55 
flower,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition/_join/1/_map:[A=absent,I=immature,M=mature]/value",Translation is from e-mail conv between Jim Matthews at Habitat Assessment <jim@habitatassessment.com> and Bob Peet on 2010-12-2~3
56 
fruit,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition/_join/2/_map:[A=absent,I=immature,M=mature]/value",Translation is from e-mail conv between Jim Matthews at Habitat Assessment <jim@habitatassessment.com> and Bob Peet on 2010-12-2~3
55 
flower,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition/_join/1,
56 
fruit,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition/_join/2,
57 57 
accession,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else","Globally unique, although occasionally duplicated. [1]
58 58 

  		




  59
  59
  
    
[1] Using the following query:


  		




  ......




  82
  82
  
    
collector2,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/3,


  		




  83
  83
  
    
collector3,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/4,


  		




  84
  84
  
    
collectno,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",


  		




  85
  
  
    
cultivated,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/then/_first/1/_alt/1/_map:[*=true]/value","For our purposes, anything non-NULL should be assumed to be cultivated"


  		




  86
  
  
    
campus,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/then/_first/1/_alt/2/_map:[*=true]/value","""this refers to occurrence on the UNCC campus, but I do not know the meaning of the codes. Presumably C = cultivated"" (https://projects.nceas.ucsb.edu/nceas/attachments/download/723/UNCC-validate_rkp_bb_rkp.xlsx#Campus)"


  		




  
  85
  
    
cultivated__main,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/then/_first/1/_alt/1",


  		




  
  86
  
    
cultivated__campus,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/then/_first/1/_alt/2",


  		




  87
  87
  
    
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank/_alt/1",


  		




  88
  88
  
    
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank/_alt/2",


  		




  89
  89
  
    
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",


  		




  ......




  128
  128
  
    
county,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,


  		




  129
  129
  
    
state,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,


  		




  130
  130
  
    
state,/location/locationplace/*_id/place/stateprovince,


  		




  
  131
  
    
campus,,"** No join mapping for cultivated__campus__verbatim ** ""this refers to occurrence on the UNCC campus, but I do not know the meaning of the codes. Presumably C = cultivated"" (https://projects.nceas.ucsb.edu/nceas/attachments/download/723/UNCC-validate_rkp_bb_rkp.xlsx#Campus)"


  		




  
  132
  
    
cultivated,,** No join mapping for cultivated__main__verbatim ** 


  		




  131
  133
  
    
filler,,"** No join mapping for *filler ** Where used, same as family"


  		




  132
  
  
    
herbarium,,"** No join mapping for specimenDonorInstitution/_map:[UNCCD=UNCC,*=*]/value ** ""The name or acronym in use by the institution that donated the collection"" (https://projects.nceas.ucsb.edu/nceas/attachments/download/593/UNCC-validation-Peet.xlsx#institutionCode). UNCCD likely = UNCC database."


  		




  
  134
  
    
flower,,** No join mapping for flower_verbatim ** 


  		




  
  135
  
    
fruit,,** No join mapping for fruit_verbatim ** 


  		




  
  136
  
    
herbarium,,"** No join mapping for specimenDonorInstitution_verbatim ** ""The name or acronym in use by the institution that donated the collection"" (https://projects.nceas.ucsb.edu/nceas/attachments/download/593/UNCC-validation-Peet.xlsx#institutionCode)"


  		




  133
  137
  
    
leaves,,** No join mapping for *leaves ** 


  		




  134
  138
  
    
root,,** No join mapping for *root ** 


  		




  135
  139
  
    
row_num,,** No join mapping for *row_num ** 


  		












Also available in:  Unified diff