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Revision 10695

Added by Aaron Marcuse-Kubitza over 10 years ago

bugfix: inputs/VegBank/stemcount_/map.csv: aggregateOrganismObservationID: prepend taxonimportance_id so that rows with only a taxonimportance entry (no stemcounts) will also have the required sourceaccessioncode

View differences:

VegBIEN.csv
12 12 
cover,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_fraction/_percent_to_fraction/value,
13 13 
stemdiameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value,"""The diameter of the stem in centimeters"" (stemDiameter definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)"
14 14 
stemheight,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m,"""The measured height of the stem in meters"" (stemHeight definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)"
15 
stemcount_id,/location/locationevent/taxonoccurrence/aggregateoccurrence/sourceaccessioncode,
15 
taxonimportance_id,/location/locationevent/taxonoccurrence/aggregateoccurrence/sourceaccessioncode/_join/1,
16 
stemcount_id,/location/locationevent/taxonoccurrence/aggregateoccurrence/sourceaccessioncode/_join/2,
16 17 
taxonobservation_id,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists","Note that taxonimportance is not 1:1 with taxonobservation [1].
17 18 

  		




  18
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[1] The following query returns rows:


  		




  ......




  31
  32
  
    
GROUP BY taxonobservation_id


  		




  32
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HAVING count(distinct taxonimportance_id) > 1


  		




  33
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-----"


  		




  34
  
  
    
stemcount_id,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/cond/_exists",


  		




  
  35
  
    
taxonimportance_id,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/cond/_exists/_join/1",


  		




  
  36
  
    
stemcount_id,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/cond/_exists/_join/2",


  		




  35
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taxonobservation_id,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/cond/_exists","Note that taxonimportance is not 1:1 with taxonobservation [1].


  		




  36
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  37
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[1] The following query returns rows:


  		




  ......




  53
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stratum_id,,** No join mapping for *stratum_id ** 


  		




  54
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stratumbase,,** No join mapping for *stratumbase ** 


  		




  55
  57
  
    
stratumheight,,** No join mapping for *stratumheight ** 


  		




  56
  
  
    
taxonimportance_id,,** No non-empty join mapping for OMIT#taxonimportance_id ** Omitted because stemcount_id is more specific


  		












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