Revision 11107
Added by Aaron Marcuse-Kubitza about 11 years ago
test.xml.ref | ||
---|---|---|
37 | 37 |
<obsstartdate><_dateRangeStart><value>$census_date</value></_dateRangeStart></obsstartdate> |
38 | 38 |
</locationevent> |
39 | 39 |
</parent_id> |
40 |
<locationevent fkey="parent_id"> |
|
41 |
<taxonoccurrence> |
|
42 |
<aggregateoccurrence> |
|
43 |
<count>$NoInd</count> |
|
44 |
<cover_fraction><_percent_to_fraction><value>$cover_percent</value></_percent_to_fraction></cover_fraction> |
|
45 |
<definedvalue fkey="tablerecord_id"> |
|
46 |
<userdefined_id> |
|
47 |
<userdefined> |
|
48 |
<tablename>aggregateoccurrence</tablename> |
|
49 |
<userdefinedname>censusNo</userdefinedname> |
|
50 |
</userdefined> |
|
51 |
</userdefined_id> |
|
52 |
<definedvalue>$census_no</definedvalue> |
|
53 |
</definedvalue> |
|
54 |
<linecover_m><_cm_to_m><value>$intercept_cm</value></_cm_to_m></linecover_m> |
|
55 |
<notes>$Notes</notes> |
|
56 |
<plantobservation> |
|
57 |
<authorplantcode>$Ind</authorplantcode> |
|
58 |
<reproductivecondition>$phenology</reproductivecondition> |
|
59 |
<sourceaccessioncode>$PlotObsID</sourceaccessioncode> |
|
60 |
<specimenreplicate> |
|
61 |
<collectionnumber> |
|
62 |
<_if name="if indirect voucher"> |
|
63 |
<cond> |
|
64 |
<_eq> |
|
65 |
<right>indirect</right> |
|
66 |
<left>$DetType</left> |
|
67 |
</_eq> |
|
68 |
</cond> |
|
69 |
<else> |
|
70 |
<_alt> |
|
71 |
<1>$coll_number</1> |
|
72 |
<2>$SourceVoucher</2> |
|
73 |
</_alt> |
|
74 |
</else> |
|
75 |
</_if> |
|
76 |
</collectionnumber> |
|
77 |
</specimenreplicate> |
|
78 |
<stemobservation> |
|
79 |
<definedvalue fkey="tablerecord_id"> |
|
80 |
<userdefined_id> |
|
81 |
<userdefined> |
|
82 |
<tablename>stemobservation</tablename> |
|
83 |
<userdefinedname>canopyForm</userdefinedname> |
|
84 |
</userdefined> |
|
85 |
</userdefined_id> |
|
86 |
<definedvalue>$canopy_form</definedvalue> |
|
87 |
</definedvalue> |
|
88 |
<definedvalue fkey="tablerecord_id"> |
|
89 |
<userdefined_id> |
|
90 |
<userdefined> |
|
91 |
<tablename>stemobservation</tablename> |
|
92 |
<userdefinedname>canopyPosition</userdefinedname> |
|
93 |
</userdefined> |
|
94 |
</userdefined_id> |
|
95 |
<definedvalue>$canopy_position</definedvalue> |
|
96 |
</definedvalue> |
|
97 |
<definedvalue fkey="tablerecord_id"> |
|
98 |
<userdefined_id> |
|
99 |
<userdefined> |
|
100 |
<tablename>stemobservation</tablename> |
|
101 |
<userdefinedname>lianaInfestation</userdefinedname> |
|
102 |
</userdefined> |
|
103 |
</userdefined_id> |
|
104 |
<definedvalue>$liana_infestation</definedvalue> |
|
105 |
</definedvalue> |
|
106 |
<diameterbreastheight_m><_cm_to_m><value>$temp_dbh</value></_cm_to_m></diameterbreastheight_m> |
|
107 |
<height_m>$height_m</height_m> |
|
108 |
<heightfirstbranch_m>$ht_first_branch_m</heightfirstbranch_m> |
|
109 |
<tag> |
|
110 |
<_alt> |
|
111 |
<1>$tag2</1> |
|
112 |
<2>$tag1</2> |
|
113 |
</_alt> |
|
114 |
</tag> |
|
115 |
<xposition_m>$x_position</xposition_m> |
|
116 |
<yposition_m>$y_position</yposition_m> |
|
117 |
</stemobservation> |
|
118 |
</plantobservation> |
|
119 |
</aggregateoccurrence> |
|
120 |
<authortaxoncode>$Ind</authortaxoncode> |
|
121 |
<collector_id> |
|
122 |
<party> |
|
123 |
<fullname> |
|
124 |
<_join_words> |
|
125 |
<1>$coll_firstname</1> |
|
126 |
<2>$coll_lastname</2> |
|
127 |
</_join_words> |
|
128 |
</fullname> |
|
129 |
</party> |
|
130 |
</collector_id> |
|
131 |
<growthform> |
|
132 |
<_map> |
|
133 |
<T>tree</T> |
|
134 |
<Arbol>tree</Arbol> |
|
135 |
<palm>tree</palm> |
|
136 |
<H>hemiepiphyte</H> |
|
137 |
<Hemiepífito>hemiepiphyte</Hemiepífito> |
|
138 |
<L>liana</L> |
|
139 |
<l>liana</l> |
|
140 |
<L?>liana</L?> |
|
141 |
<Liana>liana</Liana> |
|
142 |
<E>epiphyte</E> |
|
143 |
<S>shrub</S> |
|
144 |
<Hb>herb</Hb> |
|
145 |
<vine-herbaceous>vine</vine-herbaceous> |
|
146 |
<graminoid>grass</graminoid> |
|
147 |
<rosette>forb</rosette> |
|
148 |
<*>*</*> |
|
149 |
<value>$Habit</value> |
|
150 |
</_map> |
|
151 |
</growthform> |
|
152 |
<sourceaccessioncode>$PlotObsID</sourceaccessioncode> |
|
153 |
<taxondetermination> |
|
154 |
<party_id><party><fullname>$det_by</fullname></party></party_id> |
|
155 |
<taxonverbatim_id> |
|
156 |
<taxonverbatim> |
|
157 |
<taxonlabel_id> |
|
158 |
<taxonlabel> |
|
159 |
<parent_id> |
|
160 |
<taxonlabel> |
|
161 |
<rank>$infra_rank_1</rank> |
|
162 |
<parent_id> |
|
163 |
<taxonlabel> |
|
164 |
<rank>cultivar</rank> |
|
165 |
<parent_id> |
|
166 |
<taxonlabel> |
|
167 |
<rank>forma</rank> |
|
168 |
<parent_id> |
|
169 |
<taxonlabel> |
|
170 |
<rank>variety</rank> |
|
171 |
<parent_id> |
|
172 |
<taxonlabel> |
|
173 |
<rank>subspecies</rank> |
|
174 |
<parent_id> |
|
175 |
<taxonlabel> |
|
176 |
<rank>species</rank> |
|
177 |
<taxonepithet>$Species</taxonepithet> |
|
178 |
<parent_id> |
|
179 |
<taxonlabel> |
|
180 |
<rank>genus</rank> |
|
181 |
<taxonepithet>$Genus</taxonepithet> |
|
182 |
<parent_id> |
|
183 |
<taxonlabel> |
|
184 |
<rank>family</rank> |
|
185 |
<taxonepithet>$Family</taxonepithet> |
|
186 |
</taxonlabel> |
|
187 |
</parent_id> |
|
188 |
</taxonlabel> |
|
189 |
</parent_id> |
|
190 |
</taxonlabel> |
|
191 |
</parent_id> |
|
192 |
</taxonlabel> |
|
193 |
</parent_id> |
|
194 |
</taxonlabel> |
|
195 |
</parent_id> |
|
196 |
</taxonlabel> |
|
197 |
</parent_id> |
|
198 |
</taxonlabel> |
|
199 |
</parent_id> |
|
200 |
<taxonepithet>$infra_ep_1</taxonepithet> |
|
201 |
</taxonlabel> |
|
202 |
</parent_id> |
|
203 |
<rank>$infra_rank_1</rank> |
|
204 |
<taxonomicname> |
|
205 |
<_merge_prefix> |
|
206 |
<prefix><_taxon_family_require_std><family>$Family</family></_taxon_family_require_std></prefix> |
|
207 |
<value> |
|
208 |
<_join_words> |
|
209 |
<1> |
|
210 |
<_join_words> |
|
211 |
<2><_filter_genus><value>$Genus</value></_filter_genus></2> |
|
212 |
<3>$Species</3> |
|
213 |
<5> |
|
214 |
<_join_words> |
|
215 |
<1> |
|
216 |
<_if name="if has infraspecificEpithet"> |
|
217 |
<cond>$infra_ep_1</cond> |
|
218 |
<then>$infra_rank_1</then> |
|
219 |
</_if> |
|
220 |
</1> |
|
221 |
<2>$infra_ep_1</2> |
|
222 |
</_join_words> |
|
223 |
</5> |
|
224 |
</_join_words> |
|
225 |
</1> |
|
226 |
<2>$auth</2> |
|
227 |
</_join_words> |
|
228 |
</value> |
|
229 |
</_merge_prefix> |
|
230 |
</taxonomicname> |
|
231 |
</taxonlabel> |
|
232 |
</taxonlabel_id> |
|
233 |
<author>$auth</author> |
|
234 |
<family>$Family</family> |
|
235 |
<genus>$Genus</genus> |
|
236 |
<specific_epithet>$Species</specific_epithet> |
|
237 |
<verbatimrank>$infra_rank_1</verbatimrank> |
|
238 |
</taxonverbatim> |
|
239 |
</taxonverbatim_id> |
|
240 |
<taxonfit>$cfaff</taxonfit> |
|
241 |
</taxondetermination> |
|
242 |
<taxondetermination> |
|
243 |
<isoriginal>true</isoriginal> |
|
244 |
<taxonverbatim_id> |
|
245 |
<taxonverbatim> |
|
246 |
<family>$OrigFamily</family> |
|
247 |
<genus>$OrigGenus</genus> |
|
248 |
<morphoname>$morphoname</morphoname> |
|
249 |
<specific_epithet>$OrigSpecies</specific_epithet> |
|
250 |
</taxonverbatim> |
|
251 |
</taxonverbatim_id> |
|
252 |
</taxondetermination> |
|
253 |
<voucher> |
|
254 |
<specimenreplicate_id> |
|
255 |
<specimenreplicate> |
|
256 |
<collectionnumber> |
|
257 |
<_if name="if indirect voucher"> |
|
258 |
<cond> |
|
259 |
<_eq> |
|
260 |
<right>indirect</right> |
|
261 |
<left>$DetType</left> |
|
262 |
</_eq> |
|
263 |
</cond> |
|
264 |
<then> |
|
265 |
<_alt> |
|
266 |
<1>$coll_number</1> |
|
267 |
<2>$SourceVoucher</2> |
|
268 |
</_alt> |
|
269 |
</then> |
|
270 |
</_if> |
|
271 |
</collectionnumber> |
|
272 |
</specimenreplicate> |
|
273 |
</specimenreplicate_id> |
|
274 |
</voucher> |
|
275 |
</taxonoccurrence> |
|
276 |
</locationevent> |
|
40 | 277 |
<obsenddate><_dateRangeEnd><value>$census_date</value></_dateRangeEnd></obsenddate> |
41 | 278 |
<obsstartdate><_dateRangeStart><value>$census_date</value></_dateRangeStart></obsstartdate> |
42 |
<taxonoccurrence> |
|
43 |
<aggregateoccurrence> |
|
44 |
<count>$NoInd</count> |
|
45 |
<cover_fraction><_percent_to_fraction><value>$cover_percent</value></_percent_to_fraction></cover_fraction> |
|
46 |
<definedvalue fkey="tablerecord_id"> |
|
47 |
<userdefined_id> |
|
48 |
<userdefined> |
|
49 |
<tablename>aggregateoccurrence</tablename> |
|
50 |
<userdefinedname>censusNo</userdefinedname> |
|
51 |
</userdefined> |
|
52 |
</userdefined_id> |
|
53 |
<definedvalue>$census_no</definedvalue> |
|
54 |
</definedvalue> |
|
55 |
<linecover_m><_cm_to_m><value>$intercept_cm</value></_cm_to_m></linecover_m> |
|
56 |
<notes>$Notes</notes> |
|
57 |
<plantobservation> |
|
58 |
<authorplantcode>$Ind</authorplantcode> |
|
59 |
<reproductivecondition>$phenology</reproductivecondition> |
|
60 |
<sourceaccessioncode>$PlotObsID</sourceaccessioncode> |
|
61 |
<specimenreplicate> |
|
62 |
<collectionnumber> |
|
63 |
<_if name="if indirect voucher"> |
|
64 |
<cond> |
|
65 |
<_eq> |
|
66 |
<right>indirect</right> |
|
67 |
<left>$DetType</left> |
|
68 |
</_eq> |
|
69 |
</cond> |
|
70 |
<else> |
|
71 |
<_alt> |
|
72 |
<1>$coll_number</1> |
|
73 |
<2>$SourceVoucher</2> |
|
74 |
</_alt> |
|
75 |
</else> |
|
76 |
</_if> |
|
77 |
</collectionnumber> |
|
78 |
</specimenreplicate> |
|
79 |
<stemobservation> |
|
80 |
<definedvalue fkey="tablerecord_id"> |
|
81 |
<userdefined_id> |
|
82 |
<userdefined> |
|
83 |
<tablename>stemobservation</tablename> |
|
84 |
<userdefinedname>canopyForm</userdefinedname> |
|
85 |
</userdefined> |
|
86 |
</userdefined_id> |
|
87 |
<definedvalue>$canopy_form</definedvalue> |
|
88 |
</definedvalue> |
|
89 |
<definedvalue fkey="tablerecord_id"> |
|
90 |
<userdefined_id> |
|
91 |
<userdefined> |
|
92 |
<tablename>stemobservation</tablename> |
|
93 |
<userdefinedname>canopyPosition</userdefinedname> |
|
94 |
</userdefined> |
|
95 |
</userdefined_id> |
|
96 |
<definedvalue>$canopy_position</definedvalue> |
|
97 |
</definedvalue> |
|
98 |
<definedvalue fkey="tablerecord_id"> |
|
99 |
<userdefined_id> |
|
100 |
<userdefined> |
|
101 |
<tablename>stemobservation</tablename> |
|
102 |
<userdefinedname>lianaInfestation</userdefinedname> |
|
103 |
</userdefined> |
|
104 |
</userdefined_id> |
|
105 |
<definedvalue>$liana_infestation</definedvalue> |
|
106 |
</definedvalue> |
|
107 |
<diameterbreastheight_m><_cm_to_m><value>$temp_dbh</value></_cm_to_m></diameterbreastheight_m> |
|
108 |
<height_m>$height_m</height_m> |
|
109 |
<heightfirstbranch_m>$ht_first_branch_m</heightfirstbranch_m> |
|
110 |
<tag> |
|
111 |
<_alt> |
|
112 |
<1>$tag2</1> |
|
113 |
<2>$tag1</2> |
|
114 |
</_alt> |
|
115 |
</tag> |
|
116 |
<xposition_m>$x_position</xposition_m> |
|
117 |
<yposition_m>$y_position</yposition_m> |
|
118 |
</stemobservation> |
|
119 |
</plantobservation> |
|
120 |
</aggregateoccurrence> |
|
121 |
<authortaxoncode>$Ind</authortaxoncode> |
|
122 |
<collector_id> |
|
123 |
<party> |
|
124 |
<fullname> |
|
125 |
<_join_words> |
|
126 |
<1>$coll_firstname</1> |
|
127 |
<2>$coll_lastname</2> |
|
128 |
</_join_words> |
|
129 |
</fullname> |
|
130 |
</party> |
|
131 |
</collector_id> |
|
132 |
<growthform> |
|
133 |
<_map> |
|
134 |
<T>tree</T> |
|
135 |
<Arbol>tree</Arbol> |
|
136 |
<palm>tree</palm> |
|
137 |
<H>hemiepiphyte</H> |
|
138 |
<Hemiepífito>hemiepiphyte</Hemiepífito> |
|
139 |
<L>liana</L> |
|
140 |
<l>liana</l> |
|
141 |
<L?>liana</L?> |
|
142 |
<Liana>liana</Liana> |
|
143 |
<E>epiphyte</E> |
|
144 |
<S>shrub</S> |
|
145 |
<Hb>herb</Hb> |
|
146 |
<vine-herbaceous>vine</vine-herbaceous> |
|
147 |
<graminoid>grass</graminoid> |
|
148 |
<rosette>forb</rosette> |
|
149 |
<*>*</*> |
|
150 |
<value>$Habit</value> |
|
151 |
</_map> |
|
152 |
</growthform> |
|
153 |
<sourceaccessioncode>$PlotObsID</sourceaccessioncode> |
|
154 |
<taxondetermination> |
|
155 |
<party_id><party><fullname>$det_by</fullname></party></party_id> |
|
156 |
<taxonverbatim_id> |
|
157 |
<taxonverbatim> |
|
158 |
<taxonlabel_id> |
|
159 |
<taxonlabel> |
|
160 |
<parent_id> |
|
161 |
<taxonlabel> |
|
162 |
<rank>$infra_rank_1</rank> |
|
163 |
<parent_id> |
|
164 |
<taxonlabel> |
|
165 |
<rank>cultivar</rank> |
|
166 |
<parent_id> |
|
167 |
<taxonlabel> |
|
168 |
<rank>forma</rank> |
|
169 |
<parent_id> |
|
170 |
<taxonlabel> |
|
171 |
<rank>variety</rank> |
|
172 |
<parent_id> |
|
173 |
<taxonlabel> |
|
174 |
<rank>subspecies</rank> |
|
175 |
<parent_id> |
|
176 |
<taxonlabel> |
|
177 |
<rank>species</rank> |
|
178 |
<taxonepithet>$Species</taxonepithet> |
|
179 |
<parent_id> |
|
180 |
<taxonlabel> |
|
181 |
<rank>genus</rank> |
|
182 |
<taxonepithet>$Genus</taxonepithet> |
|
183 |
<parent_id> |
|
184 |
<taxonlabel> |
|
185 |
<rank>family</rank> |
|
186 |
<taxonepithet>$Family</taxonepithet> |
|
187 |
</taxonlabel> |
|
188 |
</parent_id> |
|
189 |
</taxonlabel> |
|
190 |
</parent_id> |
|
191 |
</taxonlabel> |
|
192 |
</parent_id> |
|
193 |
</taxonlabel> |
|
194 |
</parent_id> |
|
195 |
</taxonlabel> |
|
196 |
</parent_id> |
|
197 |
</taxonlabel> |
|
198 |
</parent_id> |
|
199 |
</taxonlabel> |
|
200 |
</parent_id> |
|
201 |
<taxonepithet>$infra_ep_1</taxonepithet> |
|
202 |
</taxonlabel> |
|
203 |
</parent_id> |
|
204 |
<rank>$infra_rank_1</rank> |
|
205 |
<taxonomicname> |
|
206 |
<_merge_prefix> |
|
207 |
<prefix><_taxon_family_require_std><family>$Family</family></_taxon_family_require_std></prefix> |
|
208 |
<value> |
|
209 |
<_join_words> |
|
210 |
<1> |
|
211 |
<_join_words> |
|
212 |
<2><_filter_genus><value>$Genus</value></_filter_genus></2> |
|
213 |
<3>$Species</3> |
|
214 |
<5> |
|
215 |
<_join_words> |
|
216 |
<1> |
|
217 |
<_if name="if has infraspecificEpithet"> |
|
218 |
<cond>$infra_ep_1</cond> |
|
219 |
<then>$infra_rank_1</then> |
|
220 |
</_if> |
|
221 |
</1> |
|
222 |
<2>$infra_ep_1</2> |
|
223 |
</_join_words> |
|
224 |
</5> |
|
225 |
</_join_words> |
|
226 |
</1> |
|
227 |
<2>$auth</2> |
|
228 |
</_join_words> |
|
229 |
</value> |
|
230 |
</_merge_prefix> |
|
231 |
</taxonomicname> |
|
232 |
</taxonlabel> |
|
233 |
</taxonlabel_id> |
|
234 |
<author>$auth</author> |
|
235 |
<family>$Family</family> |
|
236 |
<genus>$Genus</genus> |
|
237 |
<specific_epithet>$Species</specific_epithet> |
|
238 |
<verbatimrank>$infra_rank_1</verbatimrank> |
|
239 |
</taxonverbatim> |
|
240 |
</taxonverbatim_id> |
|
241 |
<taxonfit>$cfaff</taxonfit> |
|
242 |
</taxondetermination> |
|
243 |
<taxondetermination> |
|
244 |
<isoriginal>true</isoriginal> |
|
245 |
<taxonverbatim_id> |
|
246 |
<taxonverbatim> |
|
247 |
<family>$OrigFamily</family> |
|
248 |
<genus>$OrigGenus</genus> |
|
249 |
<morphoname>$morphoname</morphoname> |
|
250 |
<specific_epithet>$OrigSpecies</specific_epithet> |
|
251 |
</taxonverbatim> |
|
252 |
</taxonverbatim_id> |
|
253 |
</taxondetermination> |
|
254 |
<voucher> |
|
255 |
<specimenreplicate_id> |
|
256 |
<specimenreplicate> |
|
257 |
<collectionnumber> |
|
258 |
<_if name="if indirect voucher"> |
|
259 |
<cond> |
|
260 |
<_eq> |
|
261 |
<right>indirect</right> |
|
262 |
<left>$DetType</left> |
|
263 |
</_eq> |
|
264 |
</cond> |
|
265 |
<then> |
|
266 |
<_alt> |
|
267 |
<1>$coll_number</1> |
|
268 |
<2>$SourceVoucher</2> |
|
269 |
</_alt> |
|
270 |
</then> |
|
271 |
</_if> |
|
272 |
</collectionnumber> |
|
273 |
</specimenreplicate> |
|
274 |
</specimenreplicate_id> |
|
275 |
</voucher> |
|
276 |
</taxonoccurrence> |
|
277 | 279 |
</locationevent> |
278 | 280 |
<sourceaccessioncode> |
279 | 281 |
<_join> |
Also available in: Unified diff
bugfix: mappings/VegCore-VegBIEN.csv: nest all taxonoccurrences inside a stratum event, so that the parent locationevent is always fully populated before child locationevents point to it. (previously, a stub parent event was created when the child event was imported first, which blocked the fully-populated parent event from being inserted later on.) this uses auto-folding (for VegBank/CVS) and auto-forwarding (for other datasources) to prune empty stratum events for taxonoccurrences that don't have strata. (see wiki.vegpath.org/Auto-folding, wiki.vegpath.org/Auto-forwarding for more info about these normalization techniques.) note that the inserted row counts stay exactly the same for all datasources except VegBank (which was being fixed), indicating that this signficant change to the mappings did not change the semantics of the import of taxonoccurrences.