Revision 11107
Added by Aaron Marcuse-Kubitza about 11 years ago
| test.xml.ref | ||
|---|---|---|
| 28 | 28 |
<obsstartdate><_dateRangeStart><value>$Observation Date</value></_dateRangeStart></obsstartdate> |
| 29 | 29 |
</locationevent> |
| 30 | 30 |
</parent_id> |
| 31 |
<locationevent fkey="parent_id"> |
|
| 32 |
<taxonoccurrence> |
|
| 33 |
<aggregateoccurrence> |
|
| 34 |
<collectiondate>$Observation Date</collectiondate> |
|
| 35 |
<plantobservation> |
|
| 36 |
<sourceaccessioncode>$Id</sourceaccessioncode> |
|
| 37 |
<stemobservation> |
|
| 38 |
<diameterbreastheight_m><_cm_to_m><value>$Diameter</value></_cm_to_m></diameterbreastheight_m> |
|
| 39 |
<tag>$Tree Number</tag> |
|
| 40 |
<xposition_m>$1ha Plot X Coordinate</xposition_m> |
|
| 41 |
<yposition_m>$1ha Plot Y Coordinate</yposition_m> |
|
| 42 |
</stemobservation> |
|
| 43 |
</plantobservation> |
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| 44 |
</aggregateoccurrence> |
|
| 45 |
<authortaxoncode>$Tree Number</authortaxoncode> |
|
| 46 |
<collector_id><party><fullname>$Names of Collectors</fullname></party></collector_id> |
|
| 47 |
<sourceaccessioncode>$Id</sourceaccessioncode> |
|
| 48 |
<taxondetermination> |
|
| 49 |
<taxonverbatim_id> |
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| 50 |
<taxonverbatim> |
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| 51 |
<taxonlabel_id> |
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| 52 |
<taxonlabel> |
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| 53 |
<parent_id> |
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| 54 |
<taxonlabel> |
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| 55 |
<parent_id> |
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| 56 |
<taxonlabel> |
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| 57 |
<rank>cultivar</rank> |
|
| 58 |
<parent_id> |
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| 59 |
<taxonlabel> |
|
| 60 |
<rank>forma</rank> |
|
| 61 |
<parent_id> |
|
| 62 |
<taxonlabel> |
|
| 63 |
<rank>variety</rank> |
|
| 64 |
<parent_id> |
|
| 65 |
<taxonlabel> |
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| 66 |
<rank>subspecies</rank> |
|
| 67 |
<parent_id> |
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| 68 |
<taxonlabel> |
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| 69 |
<rank>species</rank> |
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| 70 |
<taxonepithet>$Species</taxonepithet> |
|
| 71 |
<parent_id> |
|
| 72 |
<taxonlabel> |
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| 73 |
<rank>genus</rank> |
|
| 74 |
<taxonepithet>$Genus</taxonepithet> |
|
| 75 |
<parent_id> |
|
| 76 |
<taxonlabel> |
|
| 77 |
<rank>family</rank> |
|
| 78 |
<taxonepithet>$Family</taxonepithet> |
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| 79 |
</taxonlabel> |
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| 80 |
</parent_id> |
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| 81 |
</taxonlabel> |
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| 82 |
</parent_id> |
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| 83 |
</taxonlabel> |
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| 84 |
</parent_id> |
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| 85 |
</taxonlabel> |
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| 86 |
</parent_id> |
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| 87 |
</taxonlabel> |
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| 88 |
</parent_id> |
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| 89 |
</taxonlabel> |
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| 90 |
</parent_id> |
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| 91 |
</taxonlabel> |
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| 92 |
</parent_id> |
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| 93 |
</taxonlabel> |
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| 94 |
</parent_id> |
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| 95 |
<taxonomicname> |
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| 96 |
<_merge_prefix> |
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<prefix><_taxon_family_require_std><family>$Family</family></_taxon_family_require_std></prefix> |
|
| 98 |
<value> |
|
| 99 |
<_join_words> |
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| 100 |
<2><_filter_genus><value>$Genus</value></_filter_genus></2> |
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| 101 |
<3>$Species</3> |
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| 102 |
</_join_words> |
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| 103 |
</value> |
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| 104 |
</_merge_prefix> |
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| 105 |
</taxonomicname> |
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| 106 |
</taxonlabel> |
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| 107 |
</taxonlabel_id> |
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| 108 |
<family>$Family</family> |
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<genus>$Genus</genus> |
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<specific_epithet>$Species</specific_epithet> |
|
| 111 |
</taxonverbatim> |
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| 112 |
</taxonverbatim_id> |
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| 113 |
</taxondetermination> |
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| 114 |
</taxonoccurrence> |
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| 115 |
</locationevent> |
|
| 31 | 116 |
<obsenddate><_dateRangeEnd><value>$Observation Date</value></_dateRangeEnd></obsenddate> |
| 32 | 117 |
<obsstartdate><_dateRangeStart><value>$Observation Date</value></_dateRangeStart></obsstartdate> |
| 33 |
<taxonoccurrence> |
|
| 34 |
<aggregateoccurrence> |
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| 35 |
<collectiondate>$Observation Date</collectiondate> |
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| 36 |
<plantobservation> |
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| 37 |
<sourceaccessioncode>$Id</sourceaccessioncode> |
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| 38 |
<stemobservation> |
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| 39 |
<diameterbreastheight_m><_cm_to_m><value>$Diameter</value></_cm_to_m></diameterbreastheight_m> |
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| 40 |
<tag>$Tree Number</tag> |
|
| 41 |
<xposition_m>$1ha Plot X Coordinate</xposition_m> |
|
| 42 |
<yposition_m>$1ha Plot Y Coordinate</yposition_m> |
|
| 43 |
</stemobservation> |
|
| 44 |
</plantobservation> |
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| 45 |
</aggregateoccurrence> |
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| 46 |
<authortaxoncode>$Tree Number</authortaxoncode> |
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| 47 |
<collector_id><party><fullname>$Names of Collectors</fullname></party></collector_id> |
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| 48 |
<sourceaccessioncode>$Id</sourceaccessioncode> |
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| 49 |
<taxondetermination> |
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| 50 |
<taxonverbatim_id> |
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| 51 |
<taxonverbatim> |
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| 52 |
<taxonlabel_id> |
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| 53 |
<taxonlabel> |
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| 54 |
<parent_id> |
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| 55 |
<taxonlabel> |
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| 56 |
<parent_id> |
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| 57 |
<taxonlabel> |
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| 58 |
<rank>cultivar</rank> |
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| 59 |
<parent_id> |
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| 60 |
<taxonlabel> |
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| 61 |
<rank>forma</rank> |
|
| 62 |
<parent_id> |
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| 63 |
<taxonlabel> |
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| 64 |
<rank>variety</rank> |
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| 65 |
<parent_id> |
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| 66 |
<taxonlabel> |
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| 67 |
<rank>subspecies</rank> |
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| 68 |
<parent_id> |
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| 69 |
<taxonlabel> |
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| 70 |
<rank>species</rank> |
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| 71 |
<taxonepithet>$Species</taxonepithet> |
|
| 72 |
<parent_id> |
|
| 73 |
<taxonlabel> |
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| 74 |
<rank>genus</rank> |
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| 75 |
<taxonepithet>$Genus</taxonepithet> |
|
| 76 |
<parent_id> |
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| 77 |
<taxonlabel> |
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| 78 |
<rank>family</rank> |
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| 79 |
<taxonepithet>$Family</taxonepithet> |
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| 80 |
</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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| 84 |
</taxonlabel> |
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| 85 |
</parent_id> |
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| 86 |
</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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| 95 |
</parent_id> |
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| 96 |
<taxonomicname> |
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| 97 |
<_merge_prefix> |
|
| 98 |
<prefix><_taxon_family_require_std><family>$Family</family></_taxon_family_require_std></prefix> |
|
| 99 |
<value> |
|
| 100 |
<_join_words> |
|
| 101 |
<2><_filter_genus><value>$Genus</value></_filter_genus></2> |
|
| 102 |
<3>$Species</3> |
|
| 103 |
</_join_words> |
|
| 104 |
</value> |
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| 105 |
</_merge_prefix> |
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| 106 |
</taxonomicname> |
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| 107 |
</taxonlabel> |
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| 108 |
</taxonlabel_id> |
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| 109 |
<family>$Family</family> |
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| 110 |
<genus>$Genus</genus> |
|
| 111 |
<specific_epithet>$Species</specific_epithet> |
|
| 112 |
</taxonverbatim> |
|
| 113 |
</taxonverbatim_id> |
|
| 114 |
</taxondetermination> |
|
| 115 |
</taxonoccurrence> |
|
| 116 | 118 |
</locationevent> |
| 117 | 119 |
<locationplace> |
| 118 | 120 |
<place_id> |
Also available in: Unified diff
bugfix: mappings/VegCore-VegBIEN.csv: nest all taxonoccurrences inside a stratum event, so that the parent locationevent is always fully populated before child locationevents point to it. (previously, a stub parent event was created when the child event was imported first, which blocked the fully-populated parent event from being inserted later on.) this uses auto-folding (for VegBank/CVS) and auto-forwarding (for other datasources) to prune empty stratum events for taxonoccurrences that don't have strata. (see wiki.vegpath.org/Auto-folding, wiki.vegpath.org/Auto-forwarding for more info about these normalization techniques.) note that the inserted row counts stay exactly the same for all datasources except VegBank (which was being fixed), indicating that this signficant change to the mappings did not change the semantics of the import of taxonoccurrences.