Revision 11107
Added by Aaron Marcuse-Kubitza about 11 years ago
| test.xml.ref | ||
|---|---|---|
| 29 | 29 |
</_locationnarrative_is_cultivated> |
| 30 | 30 |
</iscultivated> |
| 31 | 31 |
<locationevent> |
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<taxonoccurrence> |
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| 33 |
<aggregateoccurrence> |
|
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<collectiondate> |
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<_date> |
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<day> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$dayCollected</value> |
|
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</_nullIf> |
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</day> |
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<month> |
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<_nullIf> |
|
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<null>0</null> |
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<type>float</type> |
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<value>$monthCollected</value> |
|
| 48 |
</_nullIf> |
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</month> |
|
| 50 |
<year> |
|
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<_nullIf> |
|
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<null>0</null> |
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<type>float</type> |
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<value>$yearCollected</value> |
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</_nullIf> |
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</year> |
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</_date> |
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</collectiondate> |
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<notes>$occurrenceRemarks</notes> |
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<plantobservation> |
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<authorplantcode>$collectorNumber</authorplantcode> |
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<reproductivecondition>$reproductiveCondition</reproductivecondition> |
|
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<specimenreplicate> |
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<catalognumber_dwc>$accessionNumber</catalognumber_dwc> |
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<collectionnumber>$collectorNumber</collectionnumber> |
|
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<institution_id> |
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<sourcelist> |
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<name>U</name> |
|
| 69 |
<sourcename> |
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<name> |
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<_split> |
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<separator>[,;] *</separator> |
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<value>U</value> |
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</_split> |
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</name> |
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</sourcename> |
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</sourcelist> |
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</institution_id> |
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<sourceaccessioncode>$dataProviderRecordID</sourceaccessioncode> |
|
| 80 |
</specimenreplicate> |
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</plantobservation> |
|
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</aggregateoccurrence> |
|
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<collector_id><party><fullname>$recordedBy</fullname></party></collector_id> |
|
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<sourceaccessioncode>$dataProviderRecordID</sourceaccessioncode> |
|
| 85 |
<taxondetermination> |
|
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<party_id><party><fullname>$identifiedBy</fullname></party></party_id> |
|
| 87 |
<taxonverbatim_id> |
|
| 88 |
<taxonverbatim> |
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<taxonlabel_id> |
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<taxonlabel> |
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<parent_id> |
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<taxonlabel> |
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<parent_id> |
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<taxonlabel> |
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<rank>cultivar</rank> |
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<parent_id> |
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| 97 |
<taxonlabel> |
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<rank>forma</rank> |
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<parent_id> |
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| 100 |
<taxonlabel> |
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<rank>variety</rank> |
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<parent_id> |
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<taxonlabel> |
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<rank>subspecies</rank> |
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<parent_id> |
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<taxonlabel> |
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<rank>species</rank> |
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| 108 |
<parent_id> |
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<taxonlabel> |
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<rank>genus</rank> |
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<taxonepithet>$genus</taxonepithet> |
|
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<parent_id> |
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<taxonlabel> |
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<rank>family</rank> |
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<taxonepithet>$family</taxonepithet> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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<taxonomicname> |
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<_merge_prefix> |
|
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<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
|
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<value><_filter_genus><value>$genus</value></_filter_genus></value> |
|
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</_merge_prefix> |
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</taxonomicname> |
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</taxonlabel> |
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</taxonlabel_id> |
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<family>$family</family> |
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<genus>$genus</genus> |
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</taxonverbatim> |
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</taxonverbatim_id> |
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<determinationdate> |
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<_date> |
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<year> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$yearIdentified</value> |
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</_nullIf> |
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</year> |
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</_date> |
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</determinationdate> |
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<taxonfit>$identificationQualifier</taxonfit> |
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</taxondetermination> |
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</taxonoccurrence> |
|
| 32 |
<locationevent fkey="parent_id"> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<collectiondate> |
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<_date> |
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<day> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$dayCollected</value> |
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</_nullIf> |
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</day> |
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<month> |
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<_nullIf> |
|
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<null>0</null> |
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<type>float</type> |
|
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<value>$monthCollected</value> |
|
| 49 |
</_nullIf> |
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| 50 |
</month> |
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| 51 |
<year> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$yearCollected</value> |
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</_nullIf> |
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</year> |
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</_date> |
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</collectiondate> |
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<notes>$occurrenceRemarks</notes> |
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<plantobservation> |
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<authorplantcode>$collectorNumber</authorplantcode> |
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<reproductivecondition>$reproductiveCondition</reproductivecondition> |
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| 64 |
<specimenreplicate> |
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<catalognumber_dwc>$accessionNumber</catalognumber_dwc> |
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<collectionnumber>$collectorNumber</collectionnumber> |
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<institution_id> |
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<sourcelist> |
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<name>U</name> |
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| 70 |
<sourcename> |
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| 71 |
<name> |
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<_split> |
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<separator>[,;] *</separator> |
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<value>U</value> |
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</_split> |
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</name> |
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</sourcename> |
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</sourcelist> |
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</institution_id> |
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<sourceaccessioncode>$dataProviderRecordID</sourceaccessioncode> |
|
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</specimenreplicate> |
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</plantobservation> |
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</aggregateoccurrence> |
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<collector_id><party><fullname>$recordedBy</fullname></party></collector_id> |
|
| 85 |
<sourceaccessioncode>$dataProviderRecordID</sourceaccessioncode> |
|
| 86 |
<taxondetermination> |
|
| 87 |
<party_id><party><fullname>$identifiedBy</fullname></party></party_id> |
|
| 88 |
<taxonverbatim_id> |
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<taxonverbatim> |
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| 90 |
<taxonlabel_id> |
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| 91 |
<taxonlabel> |
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<parent_id> |
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<taxonlabel> |
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<parent_id> |
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<taxonlabel> |
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<rank>cultivar</rank> |
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| 97 |
<parent_id> |
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| 98 |
<taxonlabel> |
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<rank>forma</rank> |
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| 100 |
<parent_id> |
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| 101 |
<taxonlabel> |
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| 102 |
<rank>variety</rank> |
|
| 103 |
<parent_id> |
|
| 104 |
<taxonlabel> |
|
| 105 |
<rank>subspecies</rank> |
|
| 106 |
<parent_id> |
|
| 107 |
<taxonlabel> |
|
| 108 |
<rank>species</rank> |
|
| 109 |
<parent_id> |
|
| 110 |
<taxonlabel> |
|
| 111 |
<rank>genus</rank> |
|
| 112 |
<taxonepithet>$genus</taxonepithet> |
|
| 113 |
<parent_id> |
|
| 114 |
<taxonlabel> |
|
| 115 |
<rank>family</rank> |
|
| 116 |
<taxonepithet>$family</taxonepithet> |
|
| 117 |
</taxonlabel> |
|
| 118 |
</parent_id> |
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| 119 |
</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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| 133 |
<taxonomicname> |
|
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<_merge_prefix> |
|
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<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
|
| 136 |
<value><_filter_genus><value>$genus</value></_filter_genus></value> |
|
| 137 |
</_merge_prefix> |
|
| 138 |
</taxonomicname> |
|
| 139 |
</taxonlabel> |
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| 140 |
</taxonlabel_id> |
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<family>$family</family> |
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<genus>$genus</genus> |
|
| 143 |
</taxonverbatim> |
|
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</taxonverbatim_id> |
|
| 145 |
<determinationdate> |
|
| 146 |
<_date> |
|
| 147 |
<year> |
|
| 148 |
<_nullIf> |
|
| 149 |
<null>0</null> |
|
| 150 |
<type>float</type> |
|
| 151 |
<value>$yearIdentified</value> |
|
| 152 |
</_nullIf> |
|
| 153 |
</year> |
|
| 154 |
</_date> |
|
| 155 |
</determinationdate> |
|
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<taxonfit>$identificationQualifier</taxonfit> |
|
| 157 |
</taxondetermination> |
|
| 158 |
</taxonoccurrence> |
|
| 159 |
</locationevent> |
|
| 158 | 160 |
</locationevent> |
| 159 | 161 |
<locationnarrative> |
| 160 | 162 |
<_merge> |
Also available in: Unified diff
bugfix: mappings/VegCore-VegBIEN.csv: nest all taxonoccurrences inside a stratum event, so that the parent locationevent is always fully populated before child locationevents point to it. (previously, a stub parent event was created when the child event was imported first, which blocked the fully-populated parent event from being inserted later on.) this uses auto-folding (for VegBank/CVS) and auto-forwarding (for other datasources) to prune empty stratum events for taxonoccurrences that don't have strata. (see wiki.vegpath.org/Auto-folding, wiki.vegpath.org/Auto-forwarding for more info about these normalization techniques.) note that the inserted row counts stay exactly the same for all datasources except VegBank (which was being fixed), indicating that this signficant change to the mappings did not change the semantics of the import of taxonoccurrences.