1
|
CVS,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
|
2
|
museumAccessionNumber,"/_if[@name=""if specimen""]/cond/_exists",
|
3
|
:plot,"/_if[@name=""if specimen""]/else/source:[shortname/_first/2/_env:[name=source]]/observationtype",
|
4
|
:plot,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/cond/_eq:[right=plot]/left",
|
5
|
museumAccessionNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
|
6
|
museumAccessionNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists",
|
7
|
museumAccessionNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
|
8
|
TAXONOBSERVATION_ID,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
9
|
collectionNumber,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
10
|
OBSERVATION_ID,"/location/locationevent/_if[@name=""if subplot""]/else/sourceaccessioncode",
|
11
|
OBSERVATION_ID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists",
|
12
|
OBSERVATION_ID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/sourceaccessioncode",
|
13
|
OBSERVATION_ID,/location/locationevent/locationevent:[@fkey=parent_id]/sourceaccessioncode,
|
14
|
interpretationDate,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/1/_dateRangeStart/value",
|
15
|
taxonFit,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonfit",
|
16
|
collectionDate,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1,
|
17
|
notes,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/notes/_join/1,
|
18
|
collectionNumber,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
|
19
|
museumAccessionNumber,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
|
20
|
collectionNumber,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else",
|
21
|
museumAccessionNumber,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists",
|
22
|
stemLocation_ID,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/sourceaccessioncode,
|
23
|
OBSERVATION_ID,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
|
24
|
stemLocation_ID,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/cond/_exists",
|
25
|
collectionNumber,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
|
26
|
authorPlantName,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/1",
|
27
|
plantNameWithAuthority,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2",
|
28
|
plantname,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/3",
|
29
|
TAXONOBSERVATION_ID,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
30
|
collectionNumber,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
31
|
TAXONOBSERVATION_ID,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/sourceaccessioncode/_first/1,
|
32
|
taxonLevel,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank",
|
33
|
denorm_species,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet","unlike VegBank, this is in fact the epithet, not the full name"
|
34
|
denorm_genus,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet/_alt/1",must be _alt-ed with genus because this is missing in 1 row that has genus
|
35
|
genus,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet/_alt/2","unlike VegBank, does *not* include genus author"
|
36
|
denorm_family,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
37
|
Order,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=order]/taxonepithet",
|
38
|
Class,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet",
|
39
|
denorm_kingdom,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet",
|
40
|
denorm_triName,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet,
|
41
|
taxonLevel,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/rank,
|
42
|
taxonLevel,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank",
|
43
|
denorm_family,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family,
|
44
|
plantNameWithAuthority,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1,
|
45
|
plantname,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1,
|
46
|
denorm_genus,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value/_alt/1,must be _alt-ed with genus because this is missing in 1 row that has genus
|
47
|
genus,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value/_alt/2,"unlike VegBank, does *not* include genus author"
|
48
|
denorm_species,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,"unlike VegBank, this is in fact the epithet, not the full name"
|
49
|
denorm_triName,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
|
50
|
taxonLevel,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
|
51
|
denorm_triName,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
|
52
|
denorm_family,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/family,
|
53
|
denorm_genus,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/genus/_alt/1,must be _alt-ed with genus because this is missing in 1 row that has genus
|
54
|
genus,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/genus/_alt/2,"unlike VegBank, does *not* include genus author"
|
55
|
denorm_species,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/specific_epithet,"unlike VegBank, this is in fact the epithet, not the full name"
|
56
|
plantname,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/taxonname,
|
57
|
plantNameWithAuthority,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/taxonomicname,
|
58
|
taxonLevel,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/verbatimrank,
|
59
|
TAXONOBSERVATION_ID,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/_if[@name=""if has taxondetermination""]/cond/_exists",
|
60
|
interpretationDate,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/determinationdate/_alt/1/_dateRangeStart/value,
|
61
|
interpretationType,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/determinationtype,
|
62
|
currentInterpretation,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/iscurrent__verbatim,
|
63
|
originalInterpretation,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/isoriginal,
|
64
|
taxonFit,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/taxonfit,
|
65
|
authorPlantName,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/taxonname,
|
66
|
museumAccessionNumber,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
|
67
|
collectionNumber,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then",
|
68
|
Division,,** No join mapping for *division/_alt/2 **
|
69
|
Kingdom,,** No non-empty join mapping for DUPLICATE#of:denorm_kingdom#Kingdom **
|
70
|
PLANTCONCEPT_ID,,** No join mapping for *PLANTCONCEPT_ID **
|
71
|
PLANTNAME_ID,,** No join mapping for *PLANTNAME_ID **
|
72
|
ROLE_ID,,** No join mapping for *ROLE_ID **
|
73
|
Subclass,,** No join mapping for *Subclass **
|
74
|
Subkingdom,,** No join mapping for *Subkingdom **
|
75
|
TAXONINTERPRETATION_ID,,** No join mapping for *TAXONINTERPRETATION_ID **
|
76
|
USDAPlantsCode,,** No join mapping for *USDAPlantsCode **
|
77
|
VascularPlant,,** No join mapping for *VascularPlant **
|
78
|
accessionCode,,** No join mapping for *accessionCode **
|
79
|
collector_ID,,** No non-empty join mapping for UNUSED#collector_ID **
|
80
|
commonName,,** No join mapping for vernacularName **
|
81
|
composite family,,** No join mapping for *composite family **
|
82
|
composite genus,,** No join mapping for *composite genus **
|
83
|
composite species,,** No join mapping for *composite species **
|
84
|
composite variety,,** No non-empty join mapping for EQUIV#to:species#composite variety ** full taxonomic name at that rank
|
85
|
currentTaxonInterpPlantConcept_ID,,** No join mapping for *currentTaxonInterpPlantConcept_ID **
|
86
|
cust_cvs_collectionFlag,,** No join mapping for *cust_cvs_collectionFlag **
|
87
|
cust_cvs_corner1Presence,,** No join mapping for *cust_cvs_corner1Presence **
|
88
|
cust_cvs_corner2Presence,,** No join mapping for *cust_cvs_corner2Presence **
|
89
|
cust_cvs_corner3Presence,,** No join mapping for *cust_cvs_corner3Presence **
|
90
|
cust_cvs_corner4Presence,,** No join mapping for *cust_cvs_corner4Presence **
|
91
|
cust_cvs_corner5Presence,,** No join mapping for *cust_cvs_corner5Presence **
|
92
|
dba_src_ID,,** No join mapping for *dba_src_ID **
|
93
|
dba_unsure,,** No join mapping for *dba_unsure **
|
94
|
denorm_category,,** No join mapping for *category **
|
95
|
denorm_division,,"** No join mapping for *division/_alt/1 ** must be _alt-ed with Division because this is missing in 2 rows that have Division, and different from Division in 1 row"
|
96
|
denorm_hybridX,,** No join mapping for *hybridX **
|
97
|
denorm_quadAbbr,,** No join mapping for infraspecificRank2 ** sometimes misparsed as the last + sign in the plantNameWithAuthority
|
98
|
denorm_quadName,,** No join mapping for infraspecificEpithet2 ** sometimes misparsed as the part after the last + sign in the plantNameWithAuthority
|
99
|
denorm_triAbbr,,** No join mapping for infraspecificRank **
|
100
|
entry_herbLineID,,** No join mapping for *entry_herbLineID **
|
101
|
entry_sortOrder,,** No join mapping for *entry_sortOrder **
|
102
|
entry_treeLineID,,** No join mapping for *entry_treeLineID **
|
103
|
entry_unknownSp,,** No join mapping for *entry_unknownSp **
|
104
|
exotic,,** No join mapping for *exotic **
|
105
|
family,,** No non-empty join mapping for DUPLICATE#of:denorm_family#family **
|
106
|
groupType,,** No join mapping for *groupType **
|
107
|
growthForm_short,,** No join mapping for *growthForm_short **
|
108
|
lowestChildRank,,** No join mapping for *lowestChildRank **
|
109
|
lowestParentConcept_ID,,** No join mapping for *lowestParentConcept_ID **
|
110
|
lowestParentName,,** No join mapping for *lowestParentName **
|
111
|
museum_ID,,** No join mapping for *museum_ID **
|
112
|
notesMgt,,** No join mapping for *notesMgt **
|
113
|
notesPublic,,** No join mapping for *notesPublic **
|
114
|
partyType,,** No join mapping for *partyType **
|
115
|
plantCode,,** No join mapping for *plantCode **
|
116
|
plantConcept_accessionCode,,** No join mapping for *plantConcept_accessionCode **
|
117
|
plantConcept_dba_src_ID,,** No join mapping for *plantConcept_dba_src_ID **
|
118
|
plantConcept_entry_sppID,,** No join mapping for *plantConcept_entry_sppID **
|
119
|
plantConcept_reference_ID,,** No join mapping for *plantConcept_reference_ID **
|
120
|
plantDescription,,** No join mapping for *plantDescription **
|
121
|
reference_ID,,** No join mapping for *reference_ID **
|
122
|
revisions,,** No join mapping for *revisions **
|
123
|
section,,** No join mapping for *section **
|
124
|
species,,** No join mapping for speciesBinomial ** full taxonomic name at that rank
|
125
|
subgenus,,** No join mapping for subgenus **
|
126
|
subspecies,,** No non-empty join mapping for EQUIV#to:species#subspecies ** full taxonomic name at that rank
|
127
|
taxonConfidence,,** No join mapping for identificationVerificationStatus **
|
128
|
taxonInferenceArea,,** No join mapping for *taxonInferenceArea **
|
129
|
taxonInterpretation_PARTY_ID,,** No join mapping for *taxonInterpretation_PARTY_ID **
|
130
|
taxonInterpretation_PLANTNAME_ID,,** No join mapping for *taxonInterpretation_PLANTNAME_ID **
|
131
|
taxonInterpretation_accessionCode,,** No join mapping for *taxonInterpretation_accessionCode **
|
132
|
taxonInterpretation_dba_src_ID,,** No join mapping for *taxonInterpretation_dba_src_ID **
|
133
|
taxonObservationNotes,,** No join mapping for *taxonObservationNotes **
|
134
|
taxonObservation_accessionCode,,** No join mapping for *taxonObservation_accessionCode **
|
135
|
taxonObservation_dba_src_ID,,** No join mapping for *taxonObservation_dba_src_ID **
|
136
|
taxonObservation_entry_sppID,,** No join mapping for *taxonObservation_entry_sppID **
|
137
|
taxonObservation_reference_ID,,** No join mapping for *taxonObservation_reference_ID **
|
138
|
taxonRank,,** No non-empty join mapping for OMIT#taxonRank ** Omitted because taxonLevel contains this information in text form
|
139
|
temp_taxonUpToDate,,** No join mapping for *temp_taxonUpToDate **
|
140
|
tribe,,** No join mapping for *tribe **
|
141
|
usda_code,,** No join mapping for *usda_code **
|
142
|
usda_growthForm,,** No join mapping for *usda_growthForm **
|
143
|
variety,,** No non-empty join mapping for EQUIV#to:species#variety ** full taxonomic name at that rank
|
144
|
woody,,** No join mapping for *woody **
|