Revision 11707
Added by Aaron Marcuse-Kubitza about 11 years ago
| VegBIEN.csv | ||
|---|---|---|
| 4 | 4 |
cover,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/cover_fraction/_percent_to_fraction/value, |
| 5 | 5 |
stemDiameter,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value, |
| 6 | 6 |
stemHeight,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m, |
| 7 |
STEMCOUNT_ID,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/sourceaccessioncode, |
|
| 7 |
taxonImportance_ID,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/sourceaccessioncode/_join/1, |
|
| 8 |
STEMCOUNT_ID,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/sourceaccessioncode/_join/2, |
|
| 8 | 9 |
taxonObservation_ID,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
| 9 | 10 |
taxonObservation_ID,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/sourceaccessioncode/_first/1, |
| 10 |
STEMCOUNT_ID,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/cond/_exists", |
|
| 11 |
taxonImportance_ID,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/cond/_exists/_join/1", |
|
| 12 |
STEMCOUNT_ID,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/cond/_exists/_join/2", |
|
| 11 | 13 |
taxonObservation_ID,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/_if[@name=""if has taxondetermination""]/cond/_exists", |
| 12 | 14 |
basalArea,,** No join mapping for *basalarea ** |
| 13 | 15 |
biomass,,** No join mapping for *biomass ** |
| ... | ... | |
| 32 | 34 |
stemHeightAccuracy,,** No join mapping for *stemheightaccuracy ** |
| 33 | 35 |
stemTaxonArea,,** No join mapping for *stemtaxonarea ** |
| 34 | 36 |
stratum_ID,,** No join mapping for *stratum_id ** |
| 35 |
taxonImportance_ID,,** No non-empty join mapping for OMIT#taxonImportance_ID ** Omitted because STEMCOUNT_ID is more specific |
|
| 36 | 37 |
taxonImportance_dba_src_ID,,** No join mapping for *taxonImportance_dba_src_ID ** |
| 37 | 38 |
taxonImportance_entry_herbLineID,,** No join mapping for *taxonImportance_entry_herbLineID ** |
| 38 | 39 |
taxonImportance_entry_treeLineID,,** No join mapping for *taxonImportance_entry_treeLineID ** |
Also available in: Unified diff
bugfix: inputs/CVS/stemCount_/map.csv: ensure the aggregateoccurrence.sourceaccessioncode is always populated, because this is a required field when using sourceaccessioncodes. without it, the import will exclude rows which lack a value in this field because it cannot deduplicate on it for these rows, leading to the dropping of large numbers of occurrences. this shows up when comparing provider_count to the input table's row count, and produces the following error in the .errors table:
---
ERROR: duplicate key value violates unique constraint "aggregateoccurrence_taxonoccurrence_1_to_1"
DETAIL: Key (taxonoccurrence_id)=(1504108) already exists.
CONTEXT: SQL function "INSERT INTO aggregateoccurrence#1" statement 1
condition: sourceaccessioncode IS NULL
translated condition: "CVS.stemCount_.STEMCOUNT_ID" IS NULL
---
note that it uses the wrong unique constraint aggregateoccurrence_taxonoccurrence_1_to_1, because `sourceaccessioncode IS NULL` was true for some rows