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1 6742 aaronmk
CVS,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
2
museumAccessionNumber,"/_if[@name=""if specimen""]/cond/_exists",
3 6777 aaronmk
:plot,"/_if[@name=""if specimen""]/else/source:[shortname/_first/2/_env:[name=source]]/observationtype",
4 6758 aaronmk
:plot,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/cond/_eq:[right=plot]/left",
5 6756 aaronmk
museumAccessionNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
6
museumAccessionNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists",
7
museumAccessionNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
8 6742 aaronmk
TAXONOBSERVATION_ID,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
9 7527 aaronmk
collectionNumber,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
10 6742 aaronmk
OBSERVATION_ID,"/location/locationevent/_if[@name=""if subplot""]/else/sourceaccessioncode",
11
OBSERVATION_ID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists",
12
OBSERVATION_ID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/sourceaccessioncode",
13 11107 aaronmk
OBSERVATION_ID,/location/locationevent/locationevent:[@fkey=parent_id]/sourceaccessioncode,
14
interpretationDate,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/1/_dateRangeStart/value",
15
taxonFit,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonfit",
16
collectionDate,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1,
17
notes,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/notes/_join/1,
18
collectionNumber,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
19
museumAccessionNumber,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
20
collectionNumber,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else",
21
museumAccessionNumber,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists",
22
stemLocation_ID,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/sourceaccessioncode,
23
OBSERVATION_ID,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
24
stemLocation_ID,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/cond/_exists",
25
collectionNumber,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
26
authorPlantName,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/1",
27
plantNameWithAuthority,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2",
28
plantname,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/3",
29
TAXONOBSERVATION_ID,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
30
collectionNumber,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
31
TAXONOBSERVATION_ID,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/sourceaccessioncode/_first/1,
32 11512 aaronmk
taxonLevel,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank",
33
denorm_species,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet","unlike VegBank, this is in fact the epithet, not the full name"
34
denorm_genus,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet/_alt/1",must be _alt-ed with genus because this is missing in 1 row that has genus
35
genus,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet/_alt/2","unlike VegBank, does *not* include genus author"
36
denorm_family,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
37
Order,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=order]/taxonepithet",
38
Class,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet",
39
denorm_kingdom,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet",
40
denorm_triName,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet,
41
taxonLevel,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/rank,
42
taxonLevel,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank",
43
denorm_family,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family,
44
plantNameWithAuthority,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1,
45
plantname,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1,
46
denorm_genus,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value/_alt/1,must be _alt-ed with genus because this is missing in 1 row that has genus
47
genus,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value/_alt/2,"unlike VegBank, does *not* include genus author"
48
denorm_species,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,"unlike VegBank, this is in fact the epithet, not the full name"
49
denorm_triName,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
50
taxonLevel,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
51
denorm_triName,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
52
denorm_family,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/family,
53
denorm_genus,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/genus/_alt/1,must be _alt-ed with genus because this is missing in 1 row that has genus
54
genus,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/genus/_alt/2,"unlike VegBank, does *not* include genus author"
55
denorm_species,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/specific_epithet,"unlike VegBank, this is in fact the epithet, not the full name"
56
plantname,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/taxonname,
57
plantNameWithAuthority,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/taxonomicname,
58
taxonLevel,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/*_id/taxonverbatim/verbatimrank,
59
TAXONOBSERVATION_ID,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/_if[@name=""if has taxondetermination""]/cond/_exists",
60
interpretationDate,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/determinationdate/_alt/1/_dateRangeStart/value,
61
interpretationType,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/determinationtype,
62 11513 aaronmk
currentInterpretation,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/iscurrent__verbatim,
63
originalInterpretation,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/isoriginal,
64 11512 aaronmk
taxonFit,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal=true]/taxonfit,
65 11107 aaronmk
authorPlantName,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/taxonname,
66
museumAccessionNumber,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
67
collectionNumber,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then",
68 11271 aaronmk
Division,,** No join mapping for *division/_alt/2 **
69
Kingdom,,** No non-empty join mapping for DUPLICATE#of:denorm_kingdom#Kingdom **
70 6742 aaronmk
PLANTCONCEPT_ID,,** No join mapping for *PLANTCONCEPT_ID **
71
PLANTNAME_ID,,** No join mapping for *PLANTNAME_ID **
72
ROLE_ID,,** No join mapping for *ROLE_ID **
73 11268 aaronmk
Subclass,,** No join mapping for *Subclass **
74
Subkingdom,,** No join mapping for *Subkingdom **
75 6742 aaronmk
TAXONINTERPRETATION_ID,,** No join mapping for *TAXONINTERPRETATION_ID **
76
USDAPlantsCode,,** No join mapping for *USDAPlantsCode **
77
VascularPlant,,** No join mapping for *VascularPlant **
78
accessionCode,,** No join mapping for *accessionCode **
79 11277 aaronmk
collector_ID,,** No non-empty join mapping for UNUSED#collector_ID **
80 8234 aaronmk
commonName,,** No join mapping for vernacularName **
81 11268 aaronmk
composite family,,** No join mapping for *composite family **
82
composite genus,,** No join mapping for *composite genus **
83
composite species,,** No join mapping for *composite species **
84 11274 aaronmk
composite variety,,** No non-empty join mapping for EQUIV#to:species#composite variety ** full taxonomic name at that rank
85 6742 aaronmk
currentTaxonInterpPlantConcept_ID,,** No join mapping for *currentTaxonInterpPlantConcept_ID **
86
cust_cvs_collectionFlag,,** No join mapping for *cust_cvs_collectionFlag **
87
cust_cvs_corner1Presence,,** No join mapping for *cust_cvs_corner1Presence **
88
cust_cvs_corner2Presence,,** No join mapping for *cust_cvs_corner2Presence **
89
cust_cvs_corner3Presence,,** No join mapping for *cust_cvs_corner3Presence **
90
cust_cvs_corner4Presence,,** No join mapping for *cust_cvs_corner4Presence **
91
cust_cvs_corner5Presence,,** No join mapping for *cust_cvs_corner5Presence **
92
dba_src_ID,,** No join mapping for *dba_src_ID **
93
dba_unsure,,** No join mapping for *dba_unsure **
94 11268 aaronmk
denorm_category,,** No join mapping for *category **
95 11271 aaronmk
denorm_division,,"** No join mapping for *division/_alt/1 ** must be _alt-ed with Division because this is missing in 2 rows that have Division, and different from Division in 1 row"
96 11268 aaronmk
denorm_hybridX,,** No join mapping for *hybridX **
97 11274 aaronmk
denorm_quadAbbr,,** No join mapping for infraspecificRank2 ** sometimes misparsed as the last + sign in the plantNameWithAuthority
98
denorm_quadName,,** No join mapping for infraspecificEpithet2 ** sometimes misparsed as the part after the last + sign in the plantNameWithAuthority
99
denorm_triAbbr,,** No join mapping for infraspecificRank **
100 6742 aaronmk
entry_herbLineID,,** No join mapping for *entry_herbLineID **
101
entry_sortOrder,,** No join mapping for *entry_sortOrder **
102
entry_treeLineID,,** No join mapping for *entry_treeLineID **
103
entry_unknownSp,,** No join mapping for *entry_unknownSp **
104
exotic,,** No join mapping for *exotic **
105 11271 aaronmk
family,,** No non-empty join mapping for DUPLICATE#of:denorm_family#family **
106 6742 aaronmk
groupType,,** No join mapping for *groupType **
107
growthForm_short,,** No join mapping for *growthForm_short **
108
lowestChildRank,,** No join mapping for *lowestChildRank **
109
lowestParentConcept_ID,,** No join mapping for *lowestParentConcept_ID **
110
lowestParentName,,** No join mapping for *lowestParentName **
111
museum_ID,,** No join mapping for *museum_ID **
112
notesMgt,,** No join mapping for *notesMgt **
113
notesPublic,,** No join mapping for *notesPublic **
114
partyType,,** No join mapping for *partyType **
115
plantCode,,** No join mapping for *plantCode **
116
plantConcept_accessionCode,,** No join mapping for *plantConcept_accessionCode **
117
plantConcept_dba_src_ID,,** No join mapping for *plantConcept_dba_src_ID **
118
plantConcept_entry_sppID,,** No join mapping for *plantConcept_entry_sppID **
119
plantConcept_reference_ID,,** No join mapping for *plantConcept_reference_ID **
120
plantDescription,,** No join mapping for *plantDescription **
121
reference_ID,,** No join mapping for *reference_ID **
122
revisions,,** No join mapping for *revisions **
123 11268 aaronmk
section,,** No join mapping for *section **
124 11270 aaronmk
species,,** No join mapping for speciesBinomial ** full taxonomic name at that rank
125 11268 aaronmk
subgenus,,** No join mapping for subgenus **
126 11274 aaronmk
subspecies,,** No non-empty join mapping for EQUIV#to:species#subspecies ** full taxonomic name at that rank
127 7627 aaronmk
taxonConfidence,,** No join mapping for identificationVerificationStatus **
128 6742 aaronmk
taxonInferenceArea,,** No join mapping for *taxonInferenceArea **
129
taxonInterpretation_PARTY_ID,,** No join mapping for *taxonInterpretation_PARTY_ID **
130
taxonInterpretation_PLANTNAME_ID,,** No join mapping for *taxonInterpretation_PLANTNAME_ID **
131
taxonInterpretation_accessionCode,,** No join mapping for *taxonInterpretation_accessionCode **
132
taxonInterpretation_dba_src_ID,,** No join mapping for *taxonInterpretation_dba_src_ID **
133
taxonObservationNotes,,** No join mapping for *taxonObservationNotes **
134
taxonObservation_accessionCode,,** No join mapping for *taxonObservation_accessionCode **
135
taxonObservation_dba_src_ID,,** No join mapping for *taxonObservation_dba_src_ID **
136
taxonObservation_entry_sppID,,** No join mapping for *taxonObservation_entry_sppID **
137
taxonObservation_reference_ID,,** No join mapping for *taxonObservation_reference_ID **
138 10257 aaronmk
taxonRank,,** No non-empty join mapping for OMIT#taxonRank ** Omitted because taxonLevel contains this information in text form
139 6742 aaronmk
temp_taxonUpToDate,,** No join mapping for *temp_taxonUpToDate **
140 11268 aaronmk
tribe,,** No join mapping for *tribe **
141 6742 aaronmk
usda_code,,** No join mapping for *usda_code **
142
usda_growthForm,,** No join mapping for *usda_growthForm **
143 11274 aaronmk
variety,,** No non-empty join mapping for EQUIV#to:species#variety ** full taxonomic name at that rank
144 6742 aaronmk
woody,,** No join mapping for *woody **