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Revision 11754

inputs/CVS/: prepended the table name to each column name to prevent column collisions, using the steps at http://wiki.vegpath.org/Left-joining_a_datasource

View differences:

map.csv
1 1
CVS,VegCore,Filter,Comments
2
PLANTCONCEPT_ID,*PLANTCONCEPT_ID,,
2
PLANTCONCEPT_ID,*taxonObservation_--PLANTCONCEPT_ID,,
3 3
TAXONOBSERVATION_ID,taxonOccurrenceID,,
4 4
OBSERVATION_ID,eventID,,
5 5
authorPlantName,originalTaxonName,,
6
taxonObservation_reference_ID,*taxonObservation_reference_ID,,
7
currentTaxonInterpPlantConcept_ID,*currentTaxonInterpPlantConcept_ID,,
8
taxonInferenceArea,*taxonInferenceArea,,
9
taxonObservation_accessionCode,*taxonObservation_accessionCode,,
10
taxonObservation_dba_src_ID,*taxonObservation_dba_src_ID,,
11
cust_cvs_corner1Presence,*cust_cvs_corner1Presence,,
12
cust_cvs_corner2Presence,*cust_cvs_corner2Presence,,
13
cust_cvs_corner3Presence,*cust_cvs_corner3Presence,,
14
cust_cvs_corner4Presence,*cust_cvs_corner4Presence,,
15
cust_cvs_corner5Presence,*cust_cvs_corner5Presence,,
16
entry_herbLineID,*entry_herbLineID,,
17
entry_treeLineID,*entry_treeLineID,,
18
taxonObservation_entry_sppID,*taxonObservation_entry_sppID,,
19
entry_unknownSp,*entry_unknownSp,,
20
entry_sortOrder,*entry_sortOrder,,
21
cust_cvs_collectionFlag,*cust_cvs_collectionFlag,,
22
taxonObservationNotes,*taxonObservationNotes,,
23
temp_taxonUpToDate,*temp_taxonUpToDate,,
24
TAXONINTERPRETATION_ID,*TAXONINTERPRETATION_ID,,
6
taxonObservation_reference_ID,*taxonObservation_--taxonObservation_reference_ID,,
7
currentTaxonInterpPlantConcept_ID,*taxonObservation_--currentTaxonInterpPlantConcept_ID,,
8
taxonInferenceArea,*taxonObservation_--taxonInferenceArea,,
9
taxonObservation_accessionCode,*taxonObservation_--taxonObservation_accessionCode,,
10
taxonObservation_dba_src_ID,*taxonObservation_--taxonObservation_dba_src_ID,,
11
cust_cvs_corner1Presence,*taxonObservation_--cust_cvs_corner1Presence,,
12
cust_cvs_corner2Presence,*taxonObservation_--cust_cvs_corner2Presence,,
13
cust_cvs_corner3Presence,*taxonObservation_--cust_cvs_corner3Presence,,
14
cust_cvs_corner4Presence,*taxonObservation_--cust_cvs_corner4Presence,,
15
cust_cvs_corner5Presence,*taxonObservation_--cust_cvs_corner5Presence,,
16
entry_herbLineID,*taxonObservation_--entry_herbLineID,,
17
entry_treeLineID,*taxonObservation_--entry_treeLineID,,
18
taxonObservation_entry_sppID,*taxonObservation_--taxonObservation_entry_sppID,,
19
entry_unknownSp,*taxonObservation_--entry_unknownSp,,
20
entry_sortOrder,*taxonObservation_--entry_sortOrder,,
21
cust_cvs_collectionFlag,*taxonObservation_--cust_cvs_collectionFlag,,
22
taxonObservationNotes,*taxonObservation_--taxonObservationNotes,,
23
temp_taxonUpToDate,*taxonObservation_--temp_taxonUpToDate,,
24
TAXONINTERPRETATION_ID,*taxonObservation_--TAXONINTERPRETATION_ID,,
25 25
stemLocation_ID,stemID,,
26 26
interpretationDate,dateIdentified,,
27
taxonInterpretation_PLANTNAME_ID,*taxonInterpretation_PLANTNAME_ID,,
28
taxonInterpretation_PARTY_ID,*taxonInterpretation_PARTY_ID,,
29
ROLE_ID,*ROLE_ID,,
27
taxonInterpretation_PLANTNAME_ID,*taxonObservation_--taxonInterpretation_PLANTNAME_ID,,
28
taxonInterpretation_PARTY_ID,*taxonObservation_--taxonInterpretation_PARTY_ID,,
29
ROLE_ID,*taxonObservation_--ROLE_ID,,
30 30
interpretationType,identificationType,,
31
reference_ID,*reference_ID,,
31
reference_ID,*taxonObservation_--reference_ID,,
32 32
originalInterpretation,taxon_determination__is_original,,
33 33
currentInterpretation,taxon_determination__is_current,,
34 34
taxonFit,identificationQualifier,,
......
36 36
collector_ID,UNUSED#collector_ID,,
37 37
collectionNumber,collectorNumber,,
38 38
collectionDate,dateCollected,,
39
museum_ID,*museum_ID,,
39
museum_ID,*taxonObservation_--museum_ID,,
40 40
museumAccessionNumber,accessionNumber,,
41
groupType,*groupType,,
41
groupType,*taxonObservation_--groupType,,
42 42
notes,occurrenceRemarks,,
43
notesPublic,*notesPublic,,
44
notesMgt,*notesMgt,,
45
revisions,*revisions,,
46
taxonInterpretation_dba_src_ID,*taxonInterpretation_dba_src_ID,,
47
taxonInterpretation_accessionCode,*taxonInterpretation_accessionCode,,
48
*PLANTNAME_ID,*PLANTNAME_ID,,
49
*plantConcept_reference_ID,*plantConcept_reference_ID,,
43
notesPublic,*taxonObservation_--notesPublic,,
44
notesMgt,*taxonObservation_--notesMgt,,
45
revisions,*taxonObservation_--revisions,,
46
taxonInterpretation_dba_src_ID,*taxonObservation_--taxonInterpretation_dba_src_ID,,
47
taxonInterpretation_accessionCode,*taxonObservation_--taxonInterpretation_accessionCode,,
48
*PLANTNAME_ID,*taxonObservation_--PLANTNAME_ID,,
49
*plantConcept_reference_ID,*taxonObservation_--plantConcept_reference_ID,,
50 50
taxonName,taxonName,,
51 51
scientificName,scientificName,,
52
*plantCode,*plantCode,,
53
*plantDescription,*plantDescription,,
54
*plantConcept_accessionCode,*plantConcept_accessionCode,,
55
*plantConcept_dba_src_ID,*plantConcept_dba_src_ID,,
56
*plantConcept_entry_sppID,*plantConcept_entry_sppID,,
57
*USDAPlantsCode,*USDAPlantsCode,,
58
*VascularPlant,*VascularPlant,,
52
*plantCode,*taxonObservation_--plantCode,,
53
*plantDescription,*taxonObservation_--plantDescription,,
54
*plantConcept_accessionCode,*taxonObservation_--plantConcept_accessionCode,,
55
*plantConcept_dba_src_ID,*taxonObservation_--plantConcept_dba_src_ID,,
56
*plantConcept_entry_sppID,*taxonObservation_--plantConcept_entry_sppID,,
57
*USDAPlantsCode,*taxonObservation_--USDAPlantsCode,,
58
*VascularPlant,*taxonObservation_--VascularPlant,,
59 59
kingdom,kingdom,,
60 60
division_main,division_main,,"must be _alt-ed with Division because this is missing in 2 rows that have Division, and different from Division in 1 row"
61
*category,*category,,
61
*category,*taxonObservation_--category,,
62 62
family,family,,
63 63
genus_main,genus_main,,must be _alt-ed with genus because this is missing in 1 row that has genus
64 64
specificEpithet,specificEpithet,,"unlike VegBank, this is in fact the epithet, not the full name"
......
66 66
infraspecificEpithet,infraspecificEpithet,,
67 67
infraspecificRank2,infraspecificRank2,,sometimes misparsed as the last + sign in the plantNameWithAuthority
68 68
infraspecificEpithet2,infraspecificEpithet2,,sometimes misparsed as the part after the last + sign in the plantNameWithAuthority
69
*hybridX,*hybridX,,
69
*hybridX,*taxonObservation_--hybridX,,
70 70
taxonRank,taxonRank,,
71 71
OMIT#taxonRank,OMIT#taxonRank,,Omitted because taxonLevel contains this information in text form
72
*lowestParentName,*lowestParentName,,
73
*lowestParentConcept_ID,*lowestParentConcept_ID,,
74
*lowestChildRank,*lowestChildRank,,
72
*lowestParentName,*taxonObservation_--lowestParentName,,
73
*lowestParentConcept_ID,*taxonObservation_--lowestParentConcept_ID,,
74
*lowestChildRank,*taxonObservation_--lowestChildRank,,
75 75
vernacularName,vernacularName,,
76
*growthForm_short,*growthForm_short,,
77
*woody,*woody,,
78
*exotic,*exotic,,
79
*usda_code,*usda_code,,
80
*usda_growthForm,*usda_growthForm,,
81
*sensitiveSpeciesFuzzPlot,*sensitiveSpeciesFuzzPlot,,
76
*growthForm_short,*taxonObservation_--growthForm_short,,
77
*woody,*taxonObservation_--woody,,
78
*exotic,*taxonObservation_--exotic,,
79
*usda_code,*taxonObservation_--usda_code,,
80
*usda_growthForm,*taxonObservation_--usda_growthForm,,
81
*sensitiveSpeciesFuzzPlot,*taxonObservation_--sensitiveSpeciesFuzzPlot,,
82 82
DUPLICATE#of:denorm_kingdom#Kingdom,DUPLICATE#of:denorm_kingdom#Kingdom,,
83
*Subkingdom,*Subkingdom,,
83
*Subkingdom,*taxonObservation_--Subkingdom,,
84 84
division_normalized,division_normalized,,
85 85
class,class,,
86
*Subclass,*Subclass,,
86
*Subclass,*taxonObservation_--Subclass,,
87 87
order,order,,
88
*composite family,*composite family,,
88
*composite family,*taxonObservation_--composite family,,
89 89
DUPLICATE#of:denorm_family#family,DUPLICATE#of:denorm_family#family,,
90
*tribe,*tribe,,
91
*composite genus,*composite genus,,
90
*tribe,*taxonObservation_--tribe,,
91
*composite genus,*taxonObservation_--composite genus,,
92 92
genus_normalized,genus_normalized,,"unlike VegBank, does *not* include genus author"
93 93
subgenus,subgenus,,
94
*section,*section,,
95
*composite species,*composite species,,
94
*section,*taxonObservation_--section,,
95
*composite species,*taxonObservation_--composite species,,
96 96
speciesBinomial,speciesBinomial,,full taxonomic name at that rank
97 97
EQUIV#to:species#subspecies,EQUIV#to:species#subspecies,,full taxonomic name at that rank
98 98
EQUIV#to:species#composite variety,EQUIV#to:species#composite variety,,full taxonomic name at that rank
99 99
EQUIV#to:species#variety,EQUIV#to:species#variety,,full taxonomic name at that rank
100
division,*division,,
100
division,*taxonObservation_--division,,
101 101
genus,genus,,
102 102
:plot,observationGranularity,,

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