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| Revision:
Name Size Revision Age Author Comment
  BIEN2 10896 about 11 years Aaron Marcuse-Kubitza added BIEN2/traits_observation_counts.xls
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  backups 11697 about 11 years Aaron Marcuse-Kubitza backups/TNRS.backup.md5: updated
  bin 11806 almost 11 years Aaron Marcuse-Kubitza bin/map: support param start="", which indicate...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  derived 11783 almost 11 years Aaron Marcuse-Kubitza derived/biengeo/README.txt: updated geoscrub.sh...
  exports 11599 about 11 years Aaron Marcuse-Kubitza exports/2013-7-10.Naia.range_limiting_factors.c...
  inputs 11805 almost 11 years Aaron Marcuse-Kubitza inputs/CVS/^taxon_observation.**.sample/map.csv...
  lib 11784 almost 11 years Aaron Marcuse-Kubitza lib/sh/util.sh: import_vars: don't overwrite va...
  mappings 11513 about 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: mapped taxon_dete...
  planning 11791 almost 11 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: updated fo...
  schemas 11797 almost 11 years Aaron Marcuse-Kubitza schemas/postgresql.conf: work_mem: documented t...
  web 11798 almost 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 13.2 KB 11675 about 11 years Aaron Marcuse-Kubitza fix: /Makefile: $(macPostgresLibs): added libpq...
README.TXT 25.1 KB 11800 almost 11 years Aaron Marcuse-Kubitza bugfix: /README.TXT: Full database import: To r...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 80.2 KB 11788 almost 11 years Aaron Marcuse-Kubitza **/new_terms.csv, unmapped_terms.csv updated (u...
run 511 Bytes 11590 about 11 years Aaron Marcuse-Kubitza /run: use new exports/geoscrub_input.csv.run
unmapped_terms.csv 33 KB 11788 almost 11 years Aaron Marcuse-Kubitza **/new_terms.csv, unmapped_terms.csv updated (u...

Latest revisions

# Date Author Comment
11806 12/03/2013 08:58 AM Aaron Marcuse-Kubitza

bin/map: support param start="", which indicates the default value. this fixes a bug in inputs/input.Makefile $(restart_row), which outputs "" if an explicit starting row is not found.

11805 12/03/2013 08:25 AM Aaron Marcuse-Kubitza

inputs/CVS/^taxon_observation.**.sample/map.csv: synced output columns to input columns (which removes the extra *s)

11804 12/03/2013 08:00 AM Aaron Marcuse-Kubitza

fix: inputs/CVS/plot_/postprocess.sql: locality: include the site name (authorLocation), because this is part of the unique specification of the place that was sampled, and Bob wants this to be included in VegBIEN

11803 12/03/2013 07:58 AM Aaron Marcuse-Kubitza

inputs/CVS/^taxon_observation.**.sample/create.sql: removed parentLocationID, since this is unused in CVS

11802 12/03/2013 07:45 AM Aaron Marcuse-Kubitza

bugfix: inputs/input.Makefile: `%/install: %/create.sql`: errexit the command so that errors won't scroll by, which in this case requires `set -o pipefail`

11801 12/03/2013 06:51 AM Aaron Marcuse-Kubitza

inputs/VegBank/plot/postprocess.sql: locality: include the site name (authorlocation), because this is part of the unique specification of the place that was sampled

11800 12/03/2013 06:27 AM Aaron Marcuse-Kubitza

bugfix: /README.TXT: Full database import: To restart an aborted import for a specific table: run the two commands in errexit mode so that the datasource does not incorrectly have the temp suffix removed if the import command exited with an error

11799 12/03/2013 05:19 AM Aaron Marcuse-Kubitza

fix: inputs/CVS/taxon_observation.**/map.csv: omit authorPlantName because it is not specific to the taxonInterpretation row (this is in a separate taxonInterpretation for the original determination instead)

11798 12/03/2013 04:59 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. PostgreSQL: added links for troubleshooting out-of-memory errors, which show up (cryptically) as "The database system is in recovery mode" errors in processes running at the time the out-of-memory condition occurred.

11797 12/03/2013 02:31 AM Aaron Marcuse-Kubitza

schemas/postgresql.conf: work_mem: documented that this seemingly small # is multiplied by max_connections, i.e. 256 MB * 100 = 26 GB, which approaches total memory (32 GB)

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