Revision 1220
Added by Aaron Marcuse-Kubitza almost 13 years ago
| VegX-VegBIEN.organisms.csv | ||
|---|---|---|
| 19 | 19 |
/*ID->/*s/plotObservation/*ID->/*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,/*_id/locationevent/*_id/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/projectname, |
| 20 | 20 |
/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
| 21 | 21 |
/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/name,/*_id/locationevent/commclass/commdetermination/*_id/commconcept/commdescription, |
| 22 |
/*ID->/*s/plotObservation/simpleUserdefined[name=precipMm]/value,"/*_id/locationevent/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 23 |
/*ID->/*s/plotObservation/temperature,"/*_id/locationevent/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 24 | 22 |
/*ID->/*s/plotObservation/obsEndDate,/*_id/locationevent/obsenddate, |
| 25 | 23 |
/*ID->/*s/plotObservation/obsStartDate,/*_id/locationevent/obsstartdate, |
| 26 | 24 |
/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,/*_id/locationevent/parent_id/locationevent/authorlocationcode, |
| 27 | 25 |
/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/partyWithRole/*ID->/parties/party/organizationName,/*_id/locationevent/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
| 28 | 26 |
/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value,/*_id/locationevent/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode, |
| 27 |
/*ID->/*s/plotObservation/simpleUserdefined[name=precipMm]/value,/*_id/locationevent/precipitation, |
|
| 29 | 28 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]:[@fkey=tableRecord_ID]/definedvalue", |
| 30 | 29 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]:[@fkey=tableRecord_ID]/definedvalue", |
| 31 | 30 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]:[@fkey=tableRecord_ID]/definedvalue", |
| ... | ... | |
| 43 | 42 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=sandPercent]/value,/*_id/locationevent/soilobs:[soilhorizon=unknown]/soilsand, |
| 44 | 43 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=siltPercent]/value,/*_id/locationevent/soilobs:[soilhorizon=unknown]/soilsilt, |
| 45 | 44 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value,/*_id/locationevent/soilobs:[soilhorizon=unknown]/soiltexture, |
| 45 |
/*ID->/*s/plotObservation/temperature,/*_id/locationevent/temperature, |
|
| 46 | 46 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/maximumDepthInMeters,/*_id/locationevent/waterdepth/max, |
| 47 | 47 |
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumDepthInMeters,/*_id/locationevent/waterdepth/min, |
| 48 | 48 |
/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/authorlocationcode, |
| 49 | 49 |
/*ID->/*s/plotObservation/partyWithRole/*ID->/parties/party/organizationName,/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
| 50 | 50 |
/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value,/*_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode, |
| 51 |
/simpleUserdefined[name=individualCode]/value,/aggregateoccurrence/*_id/plantobservation/authorplantcode, |
|
| 51 | 52 |
/height,/aggregateoccurrence/*_id/plantobservation/overallheight, |
| 52 | 53 |
/simpleUserdefined[name=stemHeightM]/value,/aggregateoccurrence/*_id/plantobservation/overallheight, |
| 53 | 54 |
:[*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value,/aggregateoccurrence/*_id/plantobservation/sourceaccessioncode, |
| 54 | 55 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/relatedItem[relationshipType=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/voucher,/aggregateoccurrence/*_id/plantobservation/stemobservation/*_id/plantobservation/authorplantcode, |
| 55 | 56 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=count]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/*_id/plantobservation/stemcount, |
| 56 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance/value=0]/diameter,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=basalDiameter]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 57 |
/diameterBaseDistance[baseDistance/value=0]/diameter,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=basalDiameter]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 57 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance/value=0]/diameter,/aggregateoccurrence/*_id/plantobservation/stemobservation/basaldiameter, |
|
| 58 |
/diameterBaseDistance[baseDistance/value=0]/diameter,/aggregateoccurrence/*_id/plantobservation/stemobservation/basaldiameter, |
|
| 59 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemCanopyForm]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 60 |
/simpleUserdefined[name=canopyForm]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 58 | 61 |
/simpleUserdefined[name=stemCanopyForm]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tableRecord_ID]/definedvalue", |
| 62 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemCanopyPosition]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 63 |
/simpleUserdefined[name=canopyPosition]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 59 | 64 |
/simpleUserdefined[name=stemCanopyPosition]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tableRecord_ID]/definedvalue", |
| 60 | 65 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[*ID/*s/attribute/quantitative/*ID/*s/method(/name=Gentry)]/value=1.37]/diameter,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tableRecord_ID]/definedvalue", |
| 61 |
/simpleUserdefined[name=htFirstBranchM]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=heightFirstBranchM]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 62 |
/simpleUserdefined[name=stemHeightFirstBranchM]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=heightFirstBranchM]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 66 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemLianaInfestation]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 67 |
/simpleUserdefined[name=lianaInfestation]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 63 | 68 |
/simpleUserdefined[name=stemLianaInfestation]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue", |
| 64 | 69 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue", |
| 65 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemCanopyForm]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=stemCanopyForm]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 66 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemCanopyPosition]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=stemCanopyPosition]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 67 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemHeightFirstBranchM]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=stemHeightFirstBranchM]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 68 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemLianaInfestation]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=stemLianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 70 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 69 | 71 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[!attributeID]/value=1.37]/diameter,/aggregateoccurrence/*_id/plantobservation/stemobservation/diameterbreastheight, |
| 70 | 72 |
/diameterBaseDistance[baseDistance/value=1.37]/diameter,/aggregateoccurrence/*_id/plantobservation/stemobservation/diameterbreastheight, |
| 71 | 73 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemHeightM]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/height, |
| 74 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemHeightFirstBranchM]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/heightfirstbranch, |
|
| 75 |
/simpleUserdefined[name=htFirstBranchM]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/heightfirstbranch, |
|
| 76 |
/simpleUserdefined[name=stemHeightFirstBranchM]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/heightfirstbranch, |
|
| 72 | 77 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag:[""""/iscurrent/_alt/2=true](/tag)",Quotes sort it before tag2 |
| 73 | 78 |
/*ID->/*s/individualOrganism/identificationLabel,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag:[""""/iscurrent/_alt/2=true](/tag)",Quotes sort it before tag2 |
| 74 | 79 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=tag2]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag:[../stemtag[iscurrent/_alt/2=true]/iscurrent/_alt/1=false,iscurrent=true](/tag)", |
| ... | ... | |
| 77 | 82 |
/simpleUserdefined[name=yPosition]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/yposition, |
| 78 | 83 |
/simpleUserdefined[name=count]/value,/aggregateoccurrence/count, |
| 79 | 84 |
/simpleUserdefined[name=coverPercent]/value,/aggregateoccurrence/cover, |
| 80 |
/simpleUserdefined[name=canopyForm]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=canopyForm]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 81 |
/simpleUserdefined[name=canopyPosition]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=canopyPosition]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 82 |
/simpleUserdefined[name=interceptCm]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 83 |
/simpleUserdefined[name=lianaInfestation]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=lianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 84 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 85 |
/simpleUserdefined[name=censusNo]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 86 |
/simpleUserdefined[name=growthForm]/value,/aggregateoccurrence/growthform, |
|
| 87 |
/simpleUserdefined[name=interceptCm]/value,/aggregateoccurrence/linecover, |
|
| 85 | 88 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName",/aggregateoccurrence/verbatimcollectorname/_name/first, |
| 86 | 89 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/surName",/aggregateoccurrence/verbatimcollectorname/_name/last, |
| 87 |
/simpleUserdefined[name=censusNo]/value,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=censusNo]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 88 |
/simpleUserdefined[name=growthForm]/value,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=growthForm]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 89 |
/simpleUserdefined[name=individualCode]/value,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=individualCode]]:[@fkey=tableRecord_ID]/definedvalue", |
|
| 90 | 90 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/groupType","/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=voucherType]]:[@fkey=tableRecord_ID]/definedvalue", |
| 91 | 91 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/voucher,/specimenreplicate:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc, |
| 92 | 92 |
/simpleUserdefined[name=collectionDate]/value,/specimenreplicate:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectiondate, |
Also available in: Unified diff
VegX-VegBIEN mapping: Mapped userdefined fields to new first-class fields