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Revision 1270

Added autogenerated mappings/DwC2.ci-VegBIEN.specimens.csv. Use it to include DwC2 fields with first letter uppercased in the full DwC mapping, so that datasources that use DwC2 terms with a different case can still use the DwC2 mapping.

View differences:

VegBIEN.specimens.csv
8 8
CoordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/coordsaccuracy/_noCV/value,,89
9 9
coordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/coordsaccuracy/_noCV/value,,89
10 10
BoundingBox,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/footprintgeometry_dwc,,91
11
FootprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/footprintgeometry_dwc,,91
11 12
footprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/footprintgeometry_dwc,,91
12 13
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68
14
VerbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
13 15
verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
14 16
Locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2/_merge/1,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
15 17
Substrate,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2/_merge/2/_label[label=""substrate""]/value","Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
......
17 19
Habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
18 20
habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
19 21
MaximumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
22
MaximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
20 23
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
24
MinimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
21 25
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
22 26
MinimumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_nullIf:[null=.]/value",,71
27
DecimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
23 28
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
24 29
Latitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
30
VerbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
25 31
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
32
DecimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
26 33
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
27 34
Longitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
35
VerbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
28 36
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
37
EventDate,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate,,44
29 38
eventDate,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate,,44
30 39
DayCollected,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/1/_date/day,,44
31 40
MonthCollected,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/1/_date/month,,44
32 41
YearCollected,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/1/_date/year,,44
33 42
MaximumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max,,75
43
MaximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max,,75
34 44
maximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max,,75
35 45
MinimumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min,,74
46
MinimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min,,74
36 47
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min,,74
37 48
ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
49
ScientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
38 50
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
51
DateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate",,120
39 52
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate",,120
40 53
DayIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_alt/1/_date/day",,120
41 54
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_alt/1/_date/month",,120
......
55 68
Order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
56 69
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
57 70
Species,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
71
SpecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
58 72
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
59 73
Phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
60 74
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
75
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
61 76
Subspecies,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
62 77
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
63 78
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
64 79
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
65 80
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
66 81
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
82
FieldNotes,/description,,
67 83
fieldNotes,/description,,
68 84
Notes,/description/_merge/1,,
69 85
PlantFungusDescription,"/description/_merge/2/_label[label=""plant fungus""]/value",,
70 86
Collector,/verbatimcollectorname,,23
87
RecordedBy,/verbatimcollectorname,,23
71 88
recordedBy,/verbatimcollectorname,,23
72 89
CatalogNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
73 90
catalogNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
74 91
CollectorNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
92
RecordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
75 93
recordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
94
CollectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9
76 95
collectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9
77 96
FieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
78 97
fieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
98
InstitutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8
79 99
institutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8
100
OccurrenceID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
80 101
UniqueNYInternalRecordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
81 102
occurrenceID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
103
AcceptedNameUsage,,,135
104
AcceptedNameUsageID,,,128
105
AssociatedMedia,,,36
106
AssociatedOccurrences,,,38
107
AssociatedReferences,,,37
108
AssociatedSequences,,,39
109
AssociatedTaxa,,,40
82 110
BasisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
111
Bed,,,117
112
Behavior,,,29
113
Continent,,Brad: OMIT,59
83 114
ContinentOcean,,Brad: OMIT,59
115
CoordinateUncertaintyInMeters,,,88
116
CountryCode,,,64
117
DataGeneralizations,,,17
118
DatasetID,,,10
119
DatasetName,,,13
84 120
DateLastModified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
121
Day,,Brad: OMIT,50
122
Dcterms:accessRights,,,5
123
Dcterms:bibliographicCitation,,,6
124
Dcterms:language,,,2
125
Dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
126
Dcterms:references,,,7
127
Dcterms:rights,,,3
128
Dcterms:rightsHolder,,,4
129
Dcterms:type,,,0
130
Disposition,,,33
131
DynamicProperties,,,18
132
EarliestAgeOrLowestStage,,,109
133
EarliestEonOrLowestEonothem,,,101
134
EarliestEpochOrLowestSeries,,,107
135
EarliestEraOrLowestErathem,,,103
136
EarliestPeriodOrLowestSystem,,,105
137
EndDayOfYear,,,47
138
EstablishmentMeans,,,30
139
EventID,,,41
140
EventRemarks,,,55
141
EventTime,,Brad: OMIT,45
142
FootprintSRS,,,92
143
FootprintSpatialFit,,,93
144
Formation,,,115
145
GeodeticDatum,,,87
146
GeologicalContextID,,,100
147
GeoreferenceProtocol,,,96
148
GeoreferenceRemarks,,,99
149
GeoreferenceSources,,,97
150
GeoreferenceVerificationStatus,,,98
151
GeoreferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
152
GeoreferencedDate,,,95
153
Group,,,114
154
HigherClassification,,,141
155
HigherGeography,,,58
156
HigherGeographyID,,,57
157
HighestBiostratigraphicZone,,,112
158
IdentificationID,,,118
159
IdentificationQualifier,,,124
160
IdentificationReferences,,,121
161
IdentificationRemarks,,,123
162
IdentificationVerificationStatus,,,122
85 163
IndividualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
164
IndividualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
165
InformationWithheld,,,16
86 166
InstitutionCode,,,
167
Island,,,62
168
IslandGroup,,,61
87 169
JulianDay,,Brad: OMIT,50
170
LatestAgeOrHighestStage,,,110
171
LatestEonOrHighestEonothem,,,102
172
LatestEpochOrHighestSeries,,,108
173
LatestEraOrHighestErathem,,,104
174
LatestPeriodOrHighestSystem,,,106
175
LifeStage,,,27
176
LithostratigraphicTerms,,,113
177
LocationAccordingTo,,,78
178
LocationID,,,56
179
LocationRemarks,,,79
180
LowestBiostratigraphicZone,,,111
181
MaximumDistanceAboveSurfaceInMeters,,,77
182
MeasurementAccuracy,,,169
183
MeasurementDeterminedBy,,,172
184
MeasurementDeterminedDate,,,171
185
MeasurementID,,,166
186
MeasurementMethod,,,173
187
MeasurementRemarks,,,174
188
MeasurementType,,,167
189
MeasurementUnit,,,170
190
MeasurementValue,,,168
191
Member,,,116
192
MinimumDistanceAboveSurfaceInMeters,,,76
193
Month,,,49
194
Municipality,,,67
195
NameAccordingTo,,,138
196
NameAccordingToID,,,131
197
NamePublishedIn,,,139
198
NamePublishedInID,,,132
199
NamePublishedInYear,,,140
200
NomenclaturalCode,,,155
201
NomenclaturalStatus,,,157
202
OccurrenceRemarks,,,21
203
OccurrenceStatus,,,31
204
OriginalNameUsage,,,137
205
OriginalNameUsageID,,,130
206
OtherCatalogNumbers,,,34
207
OwnerInstitutionCode,,,14
208
ParentNameUsage,,,136
209
ParentNameUsageID,,,129
210
PointRadiusSpatialFit,,,90
88 211
PreparationType,,Brad: OMIT,32
212
Preparations,,Brad: OMIT,32
89 213
PreviousCatalogNumber,,?; Brad: OMIT,35
214
PreviousIdentifications,,Brad: OMIT,35
90 215
RelatedCatalogItem,,Brad: OMIT,161
216
RelatedResourceID,,Brad: OMIT,161
217
RelationshipAccordingTo,,,163
218
RelationshipEstablishedDate,,,164
219
RelationshipOfResource,,Brad: OMIT,162
220
RelationshipRemarks,,,165
91 221
RelationshipType,,Brad: OMIT,162
222
ReproductiveCondition,,,28
223
ResourceID,,,160
224
ResourceRelationshipID,,,159
225
SamplingEffort,,,43
226
SamplingProtocol,,,42
227
ScientificNameID,,,127
228
StartDayOfYear,,,46
229
Subgenus,,,148
230
TaxonConceptID,,,133
231
TaxonID,,,126
232
TaxonRank,,,151
233
TaxonRemarks,,,158
234
TaxonomicStatus,,,156
92 235
TimeOfDay,,Brad: OMIT,45
93 236
TypeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
237
VerbatimCoordinateSystem,,,83
238
VerbatimCoordinates,,,80
239
VerbatimDepth,,,73
240
VerbatimElevation,,,70
241
VerbatimEventDate,,,51
242
VerbatimSRS,,,84
243
VerbatimTaxonRank,,,152
244
VernacularName,,,154
245
WaterBody,,,60
246
Year,,,48
94 247
acceptedNameUsage,,,135
95 248
acceptedNameUsageID,,,128
96 249
associatedMedia,,,36

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