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Revision 1270

Added autogenerated mappings/DwC2.ci-VegBIEN.specimens.csv. Use it to include DwC2 fields with first letter uppercased in the full DwC mapping, so that datasources that use DwC2 terms with a different case can still use the DwC2 mapping.

View differences:

VegBIEN.specimens.csv
8 8
CoordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/coordsaccuracy/_noCV/value,,89
9 9
coordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/coordsaccuracy/_noCV/value,,89
10 10
BoundingBox,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/footprintgeometry_dwc,,91
11
FootprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/footprintgeometry_dwc,,91
11 12
footprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/footprintgeometry_dwc,,91
12 13
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68
14
VerbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
13 15
verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
14 16
Locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2/_merge/1,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
15 17
Substrate,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2/_merge/2/_label[label=""substrate""]/value","Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
......
17 19
Habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
18 20
habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
19 21
MaximumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
22
MaximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
20 23
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
24
MinimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
21 25
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
22 26
MinimumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_nullIf:[null=.]/value",,71
27
DecimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
23 28
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
24 29
Latitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
30
VerbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
25 31
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
32
DecimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
26 33
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
27 34
Longitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
35
VerbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
28 36
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
37
EventDate,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate,,44
29 38
eventDate,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate,,44
30 39
DayCollected,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/1/_date/day,,44
31 40
MonthCollected,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/1/_date/month,,44
32 41
YearCollected,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/1/_date/year,,44
33 42
MaximumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max,,75
43
MaximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max,,75
34 44
maximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max,,75
35 45
MinimumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min,,74
46
MinimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min,,74
36 47
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min,,74
37 48
ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
49
ScientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
38 50
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
51
DateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate",,120
39 52
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate",,120
40 53
DayIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_alt/1/_date/day",,120
41 54
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_alt/1/_date/month",,120
......
55 68
Order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
56 69
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
57 70
Species,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
71
SpecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
58 72
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
59 73
Phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
60 74
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
75
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
61 76
Subspecies,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
62 77
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
63 78
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
64 79
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
65 80
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
66 81
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
82
FieldNotes,/description,,
67 83
fieldNotes,/description,,
68 84
Notes,/description/_merge/1,,
69 85
PlantFungusDescription,"/description/_merge/2/_label[label=""plant fungus""]/value",,
70 86
Collector,/verbatimcollectorname,,23
87
RecordedBy,/verbatimcollectorname,,23
71 88
recordedBy,/verbatimcollectorname,,23
72 89
CatalogNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
73 90
catalogNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
74 91
CollectorNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
92
RecordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
75 93
recordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
94
CollectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9
76 95
collectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9
77 96
FieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
78 97
fieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
98
InstitutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8
79 99
institutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8
100
OccurrenceID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
80 101
UniqueNYInternalRecordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
81 102
occurrenceID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
103
AcceptedNameUsage,,,135
104
AcceptedNameUsageID,,,128
105
AssociatedMedia,,,36
106
AssociatedOccurrences,,,38
107
AssociatedReferences,,,37
108
AssociatedSequences,,,39
109
AssociatedTaxa,,,40
82 110
BasisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
111
Bed,,,117
112
Behavior,,,29
83 113
CollectedDate,,
114
Continent,,Brad: OMIT,59
84 115
ContinentOcean,,Brad: OMIT,59
116
CoordinateUncertaintyInMeters,,,88
117
CountryCode,,,64
118
DataGeneralizations,,,17
119
DatasetID,,,10
120
DatasetName,,,13
85 121
DateLastModified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
122
Day,,Brad: OMIT,50
123
Dcterms:accessRights,,,5
124
Dcterms:bibliographicCitation,,,6
125
Dcterms:language,,,2
126
Dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
127
Dcterms:references,,,7
128
Dcterms:rights,,,3
129
Dcterms:rightsHolder,,,4
130
Dcterms:type,,,0
131
Disposition,,,33
132
DynamicProperties,,,18
133
EarliestAgeOrLowestStage,,,109
134
EarliestEonOrLowestEonothem,,,101
135
EarliestEpochOrLowestSeries,,,107
136
EarliestEraOrLowestErathem,,,103
137
EarliestPeriodOrLowestSystem,,,105
138
EndDayOfYear,,,47
139
EstablishmentMeans,,,30
140
EventID,,,41
141
EventRemarks,,,55
142
EventTime,,Brad: OMIT,45
143
FootprintSRS,,,92
144
FootprintSpatialFit,,,93
145
Formation,,,115
146
GeodeticDatum,,,87
147
GeologicalContextID,,,100
148
GeoreferenceProtocol,,,96
149
GeoreferenceRemarks,,,99
150
GeoreferenceSources,,,97
151
GeoreferenceVerificationStatus,,,98
152
GeoreferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
153
GeoreferencedDate,,,95
154
Group,,,114
155
HigherClassification,,,141
156
HigherGeography,,,58
157
HigherGeographyID,,,57
158
HighestBiostratigraphicZone,,,112
159
IdentificationID,,,118
160
IdentificationQualifier,,,124
161
IdentificationReferences,,,121
162
IdentificationRemarks,,,123
163
IdentificationVerificationStatus,,,122
86 164
IdentifiedDate,,
87 165
IndividualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
166
IndividualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
167
InformationWithheld,,,16
88 168
InstitutionCode,,,
169
Island,,,62
170
IslandGroup,,,61
89 171
JulianDay,,Brad: OMIT,50
172
LatestAgeOrHighestStage,,,110
173
LatestEonOrHighestEonothem,,,102
174
LatestEpochOrHighestSeries,,,108
175
LatestEraOrHighestErathem,,,104
176
LatestPeriodOrHighestSystem,,,106
177
LifeStage,,,27
178
LithostratigraphicTerms,,,113
179
LocationAccordingTo,,,78
180
LocationID,,,56
181
LocationRemarks,,,79
182
LowestBiostratigraphicZone,,,111
183
MaximumDistanceAboveSurfaceInMeters,,,77
184
MeasurementAccuracy,,,169
185
MeasurementDeterminedBy,,,172
186
MeasurementDeterminedDate,,,171
187
MeasurementID,,,166
188
MeasurementMethod,,,173
189
MeasurementRemarks,,,174
190
MeasurementType,,,167
191
MeasurementUnit,,,170
192
MeasurementValue,,,168
193
Member,,,116
194
MinimumDistanceAboveSurfaceInMeters,,,76
195
Month,,,49
196
Municipality,,,67
197
NameAccordingTo,,,138
198
NameAccordingToID,,,131
199
NamePublishedIn,,,139
200
NamePublishedInID,,,132
201
NamePublishedInYear,,,140
202
NomenclaturalCode,,,155
203
NomenclaturalStatus,,,157
204
OccurrenceRemarks,,,21
205
OccurrenceStatus,,,31
206
OriginalNameUsage,,,137
207
OriginalNameUsageID,,,130
208
OtherCatalogNumbers,,,34
209
OwnerInstitutionCode,,,14
210
ParentNameUsage,,,136
211
ParentNameUsageID,,,129
212
PointRadiusSpatialFit,,,90
90 213
PreparationType,,Brad: OMIT,32
214
Preparations,,Brad: OMIT,32
91 215
PreviousCatalogNumber,,?; Brad: OMIT,35
216
PreviousIdentifications,,Brad: OMIT,35
92 217
RelatedCatalogItem,,Brad: OMIT,161
218
RelatedResourceID,,Brad: OMIT,161
219
RelationshipAccordingTo,,,163
220
RelationshipEstablishedDate,,,164
221
RelationshipOfResource,,Brad: OMIT,162
222
RelationshipRemarks,,,165
93 223
RelationshipType,,Brad: OMIT,162
224
ReproductiveCondition,,,28
225
ResourceID,,,160
226
ResourceRelationshipID,,,159
227
SamplingEffort,,,43
228
SamplingProtocol,,,42
229
ScientificNameID,,,127
230
StartDayOfYear,,,46
231
Subgenus,,,148
232
TaxonConceptID,,,133
233
TaxonID,,,126
234
TaxonRank,,,151
235
TaxonRemarks,,,158
236
TaxonomicStatus,,,156
94 237
TimeOfDay,,Brad: OMIT,45
95 238
TypeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
239
VerbatimCoordinateSystem,,,83
240
VerbatimCoordinates,,,80
241
VerbatimDepth,,,73
242
VerbatimElevation,,,70
243
VerbatimEventDate,,,51
244
VerbatimSRS,,,84
245
VerbatimTaxonRank,,,152
246
VernacularName,,,154
247
WaterBody,,,60
248
Year,,,48
96 249
acceptedNameUsage,,,135
97 250
acceptedNameUsageID,,,128
98 251
associatedMedia,,,36

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