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Revision 1270

Added autogenerated mappings/DwC2.ci-VegBIEN.specimens.csv. Use it to include DwC2 fields with first letter uppercased in the full DwC mapping, so that datasources that use DwC2 terms with a different case can still use the DwC2 mapping.

View differences:

VegBIEN.specimens.csv
8 8
CoordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/coordsaccuracy/_noCV/value,,89
9 9
coordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/coordsaccuracy/_noCV/value,,89
10 10
BoundingBox,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/footprintgeometry_dwc,,91
11
FootprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/footprintgeometry_dwc,,91
11 12
footprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/footprintgeometry_dwc,,91
12 13
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68
13 14
Locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
15
VerbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
14 16
verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
17
Habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
15 18
habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
16 19
MaximumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
20
MaximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
17 21
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
18 22
MinimumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
23
MinimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
19 24
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
20 25
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
21 26
Latitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
......
23 28
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
24 29
Longitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
25 30
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
31
EventDate,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate,,44
26 32
eventDate,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate,,44
27 33
VerbatimCollectingDate,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/0,,44
28 34
DayCollected,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/1/_date/day,,44
29 35
MonthCollected,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/1/_date/month,,44
30 36
YearCollected,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/1/_date/year,,44
37
CollectedDate,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2,,44
31 38
MaximumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max,,75
32 39
maximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max,,75
33 40
MinimumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min,,74
34 41
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min,,74
35 42
ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
43
ScientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
36 44
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
45
DateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate",,120
37 46
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate",,120
38 47
IdentifiedDate,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_alt/0",,120
39 48
DayIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_alt/1/_date/day",,120
......
54 63
Order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
55 64
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
56 65
Species,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
66
SpecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
57 67
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
58 68
Phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
59 69
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
70
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
60 71
Subspecies,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
61 72
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
62 73
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
......
67 78
Notes,/description,,
68 79
fieldNotes,/description,,
69 80
Collector,/verbatimcollectorname,,23
81
RecordedBy,/verbatimcollectorname,,23
70 82
recordedBy,/verbatimcollectorname,,23
71 83
CatalogNumberNumeric,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
72 84
catalogNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
73 85
CollectorNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
86
RecordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
74 87
recordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
88
CollectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9
75 89
collectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9
76 90
FieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
77 91
fieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
92
InstitutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8
78 93
institutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8
79 94
GlobalUniqueIdentifier,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
95
OccurrenceID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
80 96
occurrenceID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
97
AcceptedNameUsage,,,135
98
AcceptedNameUsageID,,,128
81 99
AgeClass,,
100
AssociatedMedia,,,36
101
AssociatedOccurrences,,,38
102
AssociatedReferences,,,37
103
AssociatedSequences,,,39
104
AssociatedTaxa,,,40
82 105
BasisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
106
Bed,,,117
107
Behavior,,,29
83 108
CatalogNumber,,Map to nothing so it doesn't overwrite CatalogNumberNumeric
84
CollectedDate,,Not used
109
Continent,,Brad: OMIT,59
85 110
ContinentOcean,,Brad: OMIT,59
111
CoordinateUncertaintyInMeters,,,88
112
CountryCode,,,64
113
DataGeneralizations,,,17
114
DatasetID,,,10
115
DatasetName,,,13
86 116
DateLastModified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
117
Day,,Brad: OMIT,50
118
Dcterms:accessRights,,,5
119
Dcterms:bibliographicCitation,,,6
120
Dcterms:language,,,2
121
Dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
122
Dcterms:references,,,7
123
Dcterms:rights,,,3
124
Dcterms:rightsHolder,,,4
125
Dcterms:type,,,0
87 126
DecimalLatitude,,
88 127
DecimalLongitude,,
128
Disposition,,,33
129
DynamicProperties,,,18
130
EarliestAgeOrLowestStage,,,109
131
EarliestEonOrLowestEonothem,,,101
132
EarliestEpochOrLowestSeries,,,107
133
EarliestEraOrLowestErathem,,,103
134
EarliestPeriodOrLowestSystem,,,105
135
EndDayOfYear,,,47
136
EstablishmentMeans,,,30
137
EventID,,,41
138
EventRemarks,,,55
139
EventTime,,Brad: OMIT,45
140
FootprintSRS,,,92
141
FootprintSpatialFit,,,93
142
Formation,,,115
89 143
GenGankNum,,
90 144
GeoRefMethod,,
145
GeodeticDatum,,,87
146
GeologicalContextID,,,100
147
GeoreferenceProtocol,,,96
148
GeoreferenceRemarks,,,99
149
GeoreferenceSources,,,97
150
GeoreferenceVerificationStatus,,,98
151
GeoreferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
152
GeoreferencedDate,,,95
153
Group,,,114
154
HigherClassification,,,141
91 155
HigherGeography,,
156
HigherGeographyID,,,57
157
HighestBiostratigraphicZone,,,112
92 158
HorizontalDatum,,
159
IdentificationID,,,118
93 160
IdentificationModifier,,
161
IdentificationQualifier,,,124
162
IdentificationReferences,,,121
163
IdentificationRemarks,,,123
164
IdentificationVerificationStatus,,,122
94 165
IndividualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
166
IndividualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
167
InformationWithheld,,,16
95 168
InstitutionCode,,,
96 169
Island,,
97 170
IslandGroup,,
98 171
JulianDay,,Brad: OMIT,50
99 172
LatLongComments,,
173
LatestAgeOrHighestStage,,,110
174
LatestEonOrHighestEonothem,,,102
175
LatestEpochOrHighestSeries,,,108
176
LatestEraOrHighestErathem,,,104
177
LatestPeriodOrHighestSystem,,,106
178
LifeStage,,,27
179
LithostratigraphicTerms,,,113
180
LocationAccordingTo,,,78
181
LocationID,,,56
182
LocationRemarks,,,79
183
LowestBiostratigraphicZone,,,111
100 184
MaximumDepthInMeters,,
185
MaximumDistanceAboveSurfaceInMeters,,,77
186
MeasurementAccuracy,,,169
187
MeasurementDeterminedBy,,,172
188
MeasurementDeterminedDate,,,171
189
MeasurementID,,,166
190
MeasurementMethod,,,173
191
MeasurementRemarks,,,174
192
MeasurementType,,,167
193
MeasurementUnit,,,170
194
MeasurementValue,,,168
195
Member,,,116
101 196
MinimumDepthInMeters,,
197
MinimumDistanceAboveSurfaceInMeters,,,76
198
Month,,,49
199
Municipality,,,67
200
NameAccordingTo,,,138
201
NameAccordingToID,,,131
202
NamePublishedIn,,,139
203
NamePublishedInID,,,132
204
NamePublishedInYear,,,140
205
NomenclaturalCode,,,155
206
NomenclaturalStatus,,,157
207
OccurrenceRemarks,,,21
208
OccurrenceStatus,,,31
102 209
OriginalCoordinateSystem,,
210
OriginalNameUsage,,,137
211
OriginalNameUsageID,,,130
103 212
OtherCatalogNumber,,
213
OtherCatalogNumbers,,,34
214
OwnerInstitutionCode,,,14
215
ParentNameUsage,,,136
216
ParentNameUsageID,,,129
217
PointRadiusSpatialFit,,,90
104 218
PreparationType,,Brad: OMIT,32
219
Preparations,,Brad: OMIT,32
105 220
PreviousCatalogNumber,,?; Brad: OMIT,35
221
PreviousIdentifications,,Brad: OMIT,35
106 222
RelatedCatalogItem,,Brad: OMIT,161
107 223
RelatedCatalogItems,,
224
RelatedResourceID,,Brad: OMIT,161
225
RelationshipAccordingTo,,,163
226
RelationshipEstablishedDate,,,164
227
RelationshipOfResource,,Brad: OMIT,162
228
RelationshipRemarks,,,165
108 229
RelationshipType,,Brad: OMIT,162
109 230
Remarks,,
231
ReproductiveCondition,,,28
232
ResourceID,,,160
233
ResourceRelationshipID,,,159
234
SamplingEffort,,,43
235
SamplingProtocol,,,42
236
ScientificNameID,,,127
237
StartDayOfYear,,,46
238
Subgenus,,,148
239
TaxonConceptID,,,133
240
TaxonID,,,126
241
TaxonRank,,,151
242
TaxonRemarks,,,158
243
TaxonomicStatus,,,156
110 244
TimeOfDay,,Brad: OMIT,45
111 245
Tissues,,
112 246
TypeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
247
VerbatimCoordinateSystem,,,83
248
VerbatimCoordinates,,,80
113 249
VerbatimDepth,,
114 250
VerbatimElevation,,
251
VerbatimEventDate,,,51
115 252
VerbatimLatitude,,
116 253
VerbatimLongitude,,
254
VerbatimSRS,,,84
255
VerbatimTaxonRank,,,152
256
VernacularName,,,154
257
WaterBody,,,60
258
Year,,,48
117 259
acceptedNameUsage,,,135
118 260
acceptedNameUsageID,,,128
119 261
associatedMedia,,,36

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