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1
--
2
-- PostgreSQL database dump
3
--
4

    
5
SET statement_timeout = 0;
6
SET lock_timeout = 0;
7
SET client_encoding = 'UTF8';
8
SET standard_conforming_strings = on;
9
SET check_function_bodies = false;
10
SET client_min_messages = warning;
11

    
12
--
13
-- Name: TNRS; Type: SCHEMA; Schema: -; Owner: -
14
--
15

    
16
--CREATE SCHEMA "TNRS";
17

    
18

    
19
--
20
-- Name: SCHEMA "TNRS"; Type: COMMENT; Schema: -; Owner: -
21
--
22

    
23
COMMENT ON SCHEMA "TNRS" IS 'IMPORTANT: when changing this schema, you must also make the same changes on vegbiendev:
24
on vegbiendev:
25
# back up existing TNRS schema (in case of an accidental incorrect change):
26
$ make backups/TNRS.backup-remake # runtime: 3 min ("real 2m44.277s")
27
$ svn up
28
$ svn di
29
# make the changes shown in the diff
30
## to change column types:
31
SELECT util.set_col_types(''"TNRS".tnrs'', ARRAY[
32
  (''col'', ''new_type'')
33
]::util.col_cast[]); -- runtime: 9 min ("531282 ms")
34
$ rm=1 inputs/.TNRS/schema.sql.run
35
# repeat until `svn di` shows no diff
36
# back up new TNRS schema:
37
$ make backups/TNRS.backup-remake # runtime: 3 min ("real 2m44.277s")';
38

    
39

    
40
SET search_path = "TNRS", pg_catalog;
41

    
42
--
43
-- Name: batch__fill(); Type: FUNCTION; Schema: TNRS; Owner: -
44
--
45

    
46
CREATE FUNCTION batch__fill() RETURNS trigger
47
    LANGUAGE plpgsql
48
    AS $$
49
BEGIN
50
	new.id_by_time = new.time_submitted;
51
	new.id = COALESCE(new.id, new.id_by_time);
52
	RETURN new;
53
END;
54
$$;
55

    
56

    
57
--
58
-- Name: family_is_homonym(text); Type: FUNCTION; Schema: TNRS; Owner: -
59
--
60

    
61
CREATE FUNCTION family_is_homonym(family text) RETURNS boolean
62
    LANGUAGE sql STABLE STRICT
63
    AS $_$
64
SELECT EXISTS(SELECT * FROM "IRMNG".family_homonym_epithet WHERE "taxonNameOrEpithet" = $1)
65
$_$;
66

    
67

    
68
--
69
-- Name: genus_is_homonym(text); Type: FUNCTION; Schema: TNRS; Owner: -
70
--
71

    
72
CREATE FUNCTION genus_is_homonym(genus text) RETURNS boolean
73
    LANGUAGE sql STABLE STRICT
74
    AS $_$
75
SELECT EXISTS(SELECT * FROM "IRMNG".genus_homonym_epithet WHERE "taxonNameOrEpithet" = $1)
76
$_$;
77

    
78

    
79
--
80
-- Name: map_taxonomic_status(text, text); Type: FUNCTION; Schema: TNRS; Owner: -
81
--
82

    
83
CREATE FUNCTION map_taxonomic_status(taxonomic_status_verbatim text, scrubbed_unique_taxon_name text) RETURNS text
84
    LANGUAGE sql IMMUTABLE
85
    AS $_$
86
SELECT CASE WHEN $2 IS NOT NULL THEN 'accepted' ELSE lower($1) END
87
$_$;
88

    
89

    
90
--
91
-- Name: tnrs_populate_fields(); Type: FUNCTION; Schema: TNRS; Owner: -
92
--
93

    
94
CREATE FUNCTION tnrs_populate_fields() RETURNS trigger
95
    LANGUAGE plpgsql
96
    AS $$
97
DECLARE
98
	"Specific_epithet_is_plant" boolean :=
99
		(CASE
100
		WHEN   new."Infraspecific_epithet_matched"	 IS NOT NULL
101
			OR new."Infraspecific_epithet_2_matched" IS NOT NULL
102
			OR new."Specific_epithet_score" >= 0.9 -- fuzzy match
103
			THEN true
104
		ELSE NULL -- ambiguous
105
		END);
106
	never_homonym boolean = COALESCE(new."Author_score" >= 0.6, false);
107
		-- author disambiguates
108
	family_is_homonym boolean = NOT never_homonym
109
		AND "TNRS".family_is_homonym(new."Family_matched");
110
	genus_is_homonym  boolean = NOT never_homonym
111
		AND "TNRS".genus_is_homonym(new."Genus_matched");
112
	matched_taxon_name_with_author text = NULLIF(concat_ws(' '
113
		, NULLIF(NULLIF(new."Name_matched_accepted_family", 'Unknown'),
114
			new."Name_matched")
115
		, NULLIF(new."Name_matched", 'No suitable matches found.')
116
		, new."Name_matched_author"
117
		), '');
118
	accepted_taxon_name_with_author text = NULLIF(concat_ws(' '
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		, NULLIF(NULLIF(new."Accepted_name_family", 'Unknown'),
120
			new."Accepted_name")
121
		, new."Accepted_name"
122
		, new."Accepted_name_author"
123
		), '');
124
BEGIN
125
	/* exclude homonyms because these are not valid matches (i.e. TNRS provides
126
	a name, but the name is not meaningful because it is not unambiguous). */
127
	new.is_valid_match = new."Taxonomic_status" != 'Invalid'
128
		AND COALESCE(CASE
129
		WHEN new."Family_score" = 1 AND NOT family_is_homonym -- exact match
130
			THEN true
131
		ELSE -- consider genus
132
			(CASE
133
			WHEN new."Genus_score" =  1	   -- exact match
134
				THEN
135
				(CASE
136
				WHEN NOT genus_is_homonym THEN true
137
				ELSE "Specific_epithet_is_plant"
138
				END)
139
			WHEN new."Genus_score" >= 0.85 -- fuzzy match
140
				THEN "Specific_epithet_is_plant"
141
			ELSE NULL -- ambiguous
142
			END)
143
		END, false);
144
	new.scrubbed_unique_taxon_name = COALESCE(
145
		accepted_taxon_name_with_author, matched_taxon_name_with_author);
146
	
147
	RETURN new;
148
END;
149
$$;
150

    
151

    
152
--
153
-- Name: FUNCTION tnrs_populate_fields(); Type: COMMENT; Schema: TNRS; Owner: -
154
--
155

    
156
COMMENT ON FUNCTION tnrs_populate_fields() IS 'IMPORTANT: when changing this function, you must regenerate the derived cols:
157
UPDATE "TNRS".tnrs SET "Name_submitted" = "Name_submitted"
158
runtime: 30 min ("5564082 rows affected, 1918900 ms execution time")
159
VACUUM ANALYZE "TNRS".tnrs -- to remove previous rows
160
runtime: 1.5 min ("92633 ms")';
161

    
162

    
163
SET default_tablespace = '';
164

    
165
SET default_with_oids = false;
166

    
167
--
168
-- Name: tnrs; Type: TABLE; Schema: TNRS; Owner: -; Tablespace: 
169
--
170

    
171
CREATE TABLE tnrs (
172
    batch text DEFAULT now() NOT NULL,
173
    "Name_number" integer NOT NULL,
174
    "Name_submitted" text NOT NULL,
175
    "Overall_score" double precision,
176
    "Name_matched" text,
177
    "Name_matched_rank" text,
178
    "Name_score" double precision,
179
    "Name_matched_author" text,
180
    "Name_matched_url" text,
181
    "Author_matched" text,
182
    "Author_score" double precision,
183
    "Family_matched" text,
184
    "Family_score" double precision,
185
    "Name_matched_accepted_family" text,
186
    "Genus_matched" text,
187
    "Genus_score" double precision,
188
    "Specific_epithet_matched" text,
189
    "Specific_epithet_score" double precision,
190
    "Infraspecific_rank" text,
191
    "Infraspecific_epithet_matched" text,
192
    "Infraspecific_epithet_score" double precision,
193
    "Infraspecific_rank_2" text,
194
    "Infraspecific_epithet_2_matched" text,
195
    "Infraspecific_epithet_2_score" double precision,
196
    "Annotations" text,
197
    "Unmatched_terms" text,
198
    "Taxonomic_status" text,
199
    "Accepted_name" text,
200
    "Accepted_name_author" text,
201
    "Accepted_name_rank" text,
202
    "Accepted_name_url" text,
203
    "Accepted_name_species" text,
204
    "Accepted_name_family" text,
205
    "Selected" text,
206
    "Source" text,
207
    "Warnings" text,
208
    "Accepted_name_lsid" text,
209
    is_valid_match boolean NOT NULL,
210
    scrubbed_unique_taxon_name text
211
);
212

    
213

    
214
--
215
-- Name: TABLE tnrs; Type: COMMENT; Schema: TNRS; Owner: -
216
--
217

    
218
COMMENT ON TABLE tnrs IS 'IMPORTANT: when changing this table''s schema, you may need to re-run TNRS:
219
$ inputs/.TNRS/data.sql.run refresh';
220

    
221

    
222
--
223
-- Name: MatchedTaxon; Type: VIEW; Schema: TNRS; Owner: -
224
--
225

    
226
CREATE VIEW "MatchedTaxon" AS
227
 SELECT tnrs.batch AS "*Name_matched.batch", 
228
    tnrs."Name_submitted" AS "concatenatedScientificName", 
229
    tnrs."Name_matched" AS "matchedTaxonName", 
230
    tnrs."Name_matched_rank" AS "matchedTaxonRank", 
231
    tnrs."Name_score" AS "*Name_matched.Name_score", 
232
    tnrs."Name_matched_author" AS "matchedScientificNameAuthorship", 
233
    tnrs."Name_matched_url" AS "matchedScientificNameID", 
234
    tnrs."Author_score" AS "*Name_matched.Author_score", 
235
    tnrs."Family_score" AS "matchedFamilyConfidence_fraction", 
236
    COALESCE(tnrs."Name_matched_accepted_family", tnrs."Accepted_name_family") AS "matchedFamily", 
237
    tnrs."Genus_matched" AS "matchedGenus", 
238
    tnrs."Genus_score" AS "matchedGenusConfidence_fraction", 
239
    tnrs."Specific_epithet_matched" AS "matchedSpecificEpithet", 
240
    tnrs."Specific_epithet_score" AS "matchedSpeciesConfidence_fraction", 
241
    tnrs."Infraspecific_epithet_matched" AS "matchedInfraspecificEpithet", 
242
    tnrs."Infraspecific_epithet_score" AS "*Name_matched.Infraspecific_epithet_score", 
243
    tnrs."Annotations" AS "identificationQualifier", 
244
    tnrs."Unmatched_terms" AS "morphospeciesSuffix", 
245
    tnrs."Taxonomic_status" AS "taxonomicStatus", 
246
    tnrs."Accepted_name" AS "acceptedTaxonName", 
247
    tnrs."Accepted_name_author" AS "acceptedScientificNameAuthorship", 
248
    tnrs."Accepted_name_rank" AS "acceptedTaxonRank", 
249
    tnrs."Accepted_name_url" AS "acceptedScientificNameID", 
250
    tnrs."Accepted_name_species" AS "*Name_matched.Accepted_name_species", 
251
    tnrs."Accepted_name_family" AS "acceptedFamily", 
252
    tnrs."Selected" AS "*Name_matched.Selected", 
253
    tnrs."Source" AS "*Name_matched.Source", 
254
    tnrs."Warnings" AS "*Name_matched.Warnings", 
255
    tnrs."Accepted_name_lsid" AS "*Name_matched.Accepted_name_lsid", 
256
    tnrs.is_valid_match AS taxon_scrub__is_valid_match, 
257
    tnrs.scrubbed_unique_taxon_name
258
   FROM tnrs;
259

    
260

    
261
--
262
-- Name: ValidMatchedTaxon; Type: VIEW; Schema: TNRS; Owner: -
263
--
264

    
265
CREATE VIEW "ValidMatchedTaxon" AS
266
 SELECT "MatchedTaxon"."*Name_matched.batch", 
267
    "MatchedTaxon"."concatenatedScientificName", 
268
    "MatchedTaxon"."matchedTaxonName", 
269
    "MatchedTaxon"."matchedTaxonRank", 
270
    "MatchedTaxon"."*Name_matched.Name_score", 
271
    "MatchedTaxon"."matchedScientificNameAuthorship", 
272
    "MatchedTaxon"."matchedScientificNameID", 
273
    "MatchedTaxon"."*Name_matched.Author_score", 
274
    "MatchedTaxon"."matchedFamilyConfidence_fraction", 
275
    "MatchedTaxon"."matchedFamily", 
276
    "MatchedTaxon"."matchedGenus", 
277
    "MatchedTaxon"."matchedGenusConfidence_fraction", 
278
    "MatchedTaxon"."matchedSpecificEpithet", 
279
    "MatchedTaxon"."matchedSpeciesConfidence_fraction", 
280
    "MatchedTaxon"."matchedInfraspecificEpithet", 
281
    "MatchedTaxon"."*Name_matched.Infraspecific_epithet_score", 
282
    "MatchedTaxon"."identificationQualifier", 
283
    "MatchedTaxon"."morphospeciesSuffix", 
284
    "MatchedTaxon"."taxonomicStatus", 
285
    "MatchedTaxon"."acceptedTaxonName", 
286
    "MatchedTaxon"."acceptedScientificNameAuthorship", 
287
    "MatchedTaxon"."acceptedTaxonRank", 
288
    "MatchedTaxon"."acceptedScientificNameID", 
289
    "MatchedTaxon"."*Name_matched.Accepted_name_species", 
290
    "MatchedTaxon"."acceptedFamily", 
291
    "MatchedTaxon"."*Name_matched.Selected", 
292
    "MatchedTaxon"."*Name_matched.Source", 
293
    "MatchedTaxon"."*Name_matched.Warnings", 
294
    "MatchedTaxon"."*Name_matched.Accepted_name_lsid", 
295
    "MatchedTaxon".taxon_scrub__is_valid_match, 
296
    "MatchedTaxon".scrubbed_unique_taxon_name
297
   FROM "MatchedTaxon"
298
  WHERE "MatchedTaxon".taxon_scrub__is_valid_match;
299

    
300

    
301
--
302
-- Name: VIEW "ValidMatchedTaxon"; Type: COMMENT; Schema: TNRS; Owner: -
303
--
304

    
305
COMMENT ON VIEW "ValidMatchedTaxon" IS 'to update, use * as the column list';
306

    
307

    
308
--
309
-- Name: batch; Type: TABLE; Schema: TNRS; Owner: -; Tablespace: 
310
--
311

    
312
CREATE TABLE batch (
313
    id text NOT NULL,
314
    id_by_time text,
315
    time_submitted timestamp with time zone DEFAULT now(),
316
    client_version text
317
);
318

    
319

    
320
--
321
-- Name: batch_download_settings; Type: TABLE; Schema: TNRS; Owner: -; Tablespace: 
322
--
323

    
324
CREATE TABLE batch_download_settings (
325
    id text NOT NULL,
326
    "E-mail" text,
327
    "Id" text,
328
    "Job type" text,
329
    "Contains Id" boolean,
330
    "Start time" text,
331
    "Finish time" text,
332
    "TNRS version" text,
333
    "Sources selected" text,
334
    "Match threshold" double precision,
335
    "Classification" text,
336
    "Allow partial matches?" boolean,
337
    "Sort by source" boolean,
338
    "Constrain by higher taxonomy" boolean
339
);
340

    
341

    
342
--
343
-- Name: TABLE batch_download_settings; Type: COMMENT; Schema: TNRS; Owner: -
344
--
345

    
346
COMMENT ON TABLE batch_download_settings IS 'stores data from http://tnrs.iplantcollaborative.org/TNRSapp.html > Submit List > results section > Download settings > settings.txt';
347

    
348

    
349
--
350
-- Name: client_version; Type: TABLE; Schema: TNRS; Owner: -; Tablespace: 
351
--
352

    
353
CREATE TABLE client_version (
354
    id text NOT NULL,
355
    global_rev integer NOT NULL,
356
    "/lib/tnrs.py rev" integer,
357
    "/bin/tnrs_db rev" integer
358
);
359

    
360

    
361
--
362
-- Name: TABLE client_version; Type: COMMENT; Schema: TNRS; Owner: -
363
--
364

    
365
COMMENT ON TABLE client_version IS 'contains svn revisions';
366

    
367

    
368
--
369
-- Name: COLUMN client_version.global_rev; Type: COMMENT; Schema: TNRS; Owner: -
370
--
371

    
372
COMMENT ON COLUMN client_version.global_rev IS 'from `svn info .` > Last Changed Rev';
373

    
374

    
375
--
376
-- Name: COLUMN client_version."/lib/tnrs.py rev"; Type: COMMENT; Schema: TNRS; Owner: -
377
--
378

    
379
COMMENT ON COLUMN client_version."/lib/tnrs.py rev" IS 'from `svn info lib/tnrs.py` > Last Changed Rev';
380

    
381

    
382
--
383
-- Name: COLUMN client_version."/bin/tnrs_db rev"; Type: COMMENT; Schema: TNRS; Owner: -
384
--
385

    
386
COMMENT ON COLUMN client_version."/bin/tnrs_db rev" IS 'from `svn info bin/tnrs_db` > Last Changed Rev';
387

    
388

    
389
--
390
-- Name: taxon_scrub.scrubbed_unique_taxon_name.*; Type: VIEW; Schema: TNRS; Owner: -
391
--
392

    
393
CREATE VIEW "taxon_scrub.scrubbed_unique_taxon_name.*" AS
394
 SELECT tnrs."Name_submitted" AS scrubbed_unique_taxon_name, 
395
    tnrs."Name_matched_rank" AS scrubbed_taxon_rank, 
396
    COALESCE(tnrs."Name_matched_accepted_family", tnrs."Family_matched") AS scrubbed_family, 
397
    tnrs."Genus_matched" AS scrubbed_genus, 
398
    tnrs."Specific_epithet_matched" AS scrubbed_specific_epithet, 
399
    tnrs."Infraspecific_rank" AS scrubbed_infraspecific_rank, 
400
    tnrs."Infraspecific_epithet_matched" AS scrubbed_infraspecific_epithet, 
401
    tnrs."Name_matched_author" AS scrubbed_author, 
402
    tnrs."Name_matched" AS scrubbed_taxon_name_no_author
403
   FROM tnrs;
404

    
405

    
406
--
407
-- Name: VIEW "taxon_scrub.scrubbed_unique_taxon_name.*"; Type: COMMENT; Schema: TNRS; Owner: -
408
--
409

    
410
COMMENT ON VIEW "taxon_scrub.scrubbed_unique_taxon_name.*" IS 'scrubbed_family: Name_matched_accepted_family was missing from the TNRS results at one point, so Family_matched is used as a workaround to populate this. the workaround is for *accepted names only*, as no opinion names do not have an Accepted_name_family to prepend to the scrubbed name to parse.';
411

    
412

    
413
--
414
-- Name: taxon_scrub; Type: VIEW; Schema: TNRS; Owner: -
415
--
416

    
417
CREATE VIEW taxon_scrub AS
418
 SELECT "ValidMatchedTaxon".scrubbed_unique_taxon_name, 
419
    "ValidMatchedTaxon"."*Name_matched.batch", 
420
    "ValidMatchedTaxon"."concatenatedScientificName", 
421
    "ValidMatchedTaxon"."matchedTaxonName", 
422
    "ValidMatchedTaxon"."matchedTaxonRank", 
423
    "ValidMatchedTaxon"."*Name_matched.Name_score", 
424
    "ValidMatchedTaxon"."matchedScientificNameAuthorship", 
425
    "ValidMatchedTaxon"."matchedScientificNameID", 
426
    "ValidMatchedTaxon"."*Name_matched.Author_score", 
427
    "ValidMatchedTaxon"."matchedFamilyConfidence_fraction", 
428
    "ValidMatchedTaxon"."matchedFamily", 
429
    "ValidMatchedTaxon"."matchedGenus", 
430
    "ValidMatchedTaxon"."matchedGenusConfidence_fraction", 
431
    "ValidMatchedTaxon"."matchedSpecificEpithet", 
432
    "ValidMatchedTaxon"."matchedSpeciesConfidence_fraction", 
433
    "ValidMatchedTaxon"."matchedInfraspecificEpithet", 
434
    "ValidMatchedTaxon"."*Name_matched.Infraspecific_epithet_score", 
435
    "ValidMatchedTaxon"."identificationQualifier", 
436
    "ValidMatchedTaxon"."morphospeciesSuffix", 
437
    "ValidMatchedTaxon"."taxonomicStatus", 
438
    "ValidMatchedTaxon"."acceptedTaxonName", 
439
    "ValidMatchedTaxon"."acceptedScientificNameAuthorship", 
440
    "ValidMatchedTaxon"."acceptedTaxonRank", 
441
    "ValidMatchedTaxon"."acceptedScientificNameID", 
442
    "ValidMatchedTaxon"."*Name_matched.Accepted_name_species", 
443
    "ValidMatchedTaxon"."acceptedFamily", 
444
    "ValidMatchedTaxon"."*Name_matched.Selected", 
445
    "ValidMatchedTaxon"."*Name_matched.Source", 
446
    "ValidMatchedTaxon"."*Name_matched.Warnings", 
447
    "ValidMatchedTaxon"."*Name_matched.Accepted_name_lsid", 
448
    "ValidMatchedTaxon".taxon_scrub__is_valid_match, 
449
    "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_taxon_rank, 
450
    "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_family, 
451
    "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_genus, 
452
    "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_specific_epithet, 
453
    "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_infraspecific_rank, 
454
    "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_infraspecific_epithet, 
455
    "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_author, 
456
    "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_taxon_name_no_author
457
   FROM ("ValidMatchedTaxon"
458
   LEFT JOIN "taxon_scrub.scrubbed_unique_taxon_name.*" USING (scrubbed_unique_taxon_name));
459

    
460

    
461
--
462
-- Name: VIEW taxon_scrub; Type: COMMENT; Schema: TNRS; Owner: -
463
--
464

    
465
COMMENT ON VIEW taxon_scrub IS 'to update, use * as the column list';
466

    
467

    
468
--
469
-- Name: batch_download_settings_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: 
470
--
471

    
472
ALTER TABLE ONLY batch_download_settings
473
    ADD CONSTRAINT batch_download_settings_pkey PRIMARY KEY (id);
474

    
475

    
476
--
477
-- Name: batch_id_by_time_key; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: 
478
--
479

    
480
ALTER TABLE ONLY batch
481
    ADD CONSTRAINT batch_id_by_time_key UNIQUE (id_by_time);
482

    
483

    
484
--
485
-- Name: batch_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: 
486
--
487

    
488
ALTER TABLE ONLY batch
489
    ADD CONSTRAINT batch_pkey PRIMARY KEY (id);
490

    
491

    
492
--
493
-- Name: client_version_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: 
494
--
495

    
496
ALTER TABLE ONLY client_version
497
    ADD CONSTRAINT client_version_pkey PRIMARY KEY (id);
498

    
499

    
500
--
501
-- Name: tnrs_Name_submitted_key; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: 
502
--
503

    
504
ALTER TABLE ONLY tnrs
505
    ADD CONSTRAINT "tnrs_Name_submitted_key" UNIQUE ("Name_submitted");
506

    
507

    
508
--
509
-- Name: tnrs_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: 
510
--
511

    
512
ALTER TABLE ONLY tnrs
513
    ADD CONSTRAINT tnrs_pkey PRIMARY KEY (batch, "Name_number");
514

    
515

    
516
--
517
-- Name: batch_client_version_idx; Type: INDEX; Schema: TNRS; Owner: -; Tablespace: 
518
--
519

    
520
CREATE INDEX batch_client_version_idx ON batch USING btree (client_version);
521

    
522

    
523
--
524
-- Name: tnrs__valid_match; Type: INDEX; Schema: TNRS; Owner: -; Tablespace: 
525
--
526

    
527
CREATE UNIQUE INDEX tnrs__valid_match ON tnrs USING btree ("Name_submitted") WHERE is_valid_match;
528

    
529

    
530
--
531
-- Name: batch__fill; Type: TRIGGER; Schema: TNRS; Owner: -
532
--
533

    
534
CREATE TRIGGER batch__fill BEFORE INSERT OR UPDATE ON batch FOR EACH ROW EXECUTE PROCEDURE batch__fill();
535

    
536

    
537
--
538
-- Name: tnrs_populate_fields; Type: TRIGGER; Schema: TNRS; Owner: -
539
--
540

    
541
CREATE TRIGGER tnrs_populate_fields BEFORE INSERT OR UPDATE ON tnrs FOR EACH ROW EXECUTE PROCEDURE tnrs_populate_fields();
542

    
543

    
544
--
545
-- Name: batch_client_version_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: -
546
--
547

    
548
ALTER TABLE ONLY batch
549
    ADD CONSTRAINT batch_client_version_fkey FOREIGN KEY (client_version) REFERENCES client_version(id) ON UPDATE CASCADE ON DELETE CASCADE;
550

    
551

    
552
--
553
-- Name: batch_download_settings_id_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: -
554
--
555

    
556
ALTER TABLE ONLY batch_download_settings
557
    ADD CONSTRAINT batch_download_settings_id_fkey FOREIGN KEY (id) REFERENCES batch(id) ON UPDATE CASCADE ON DELETE CASCADE;
558

    
559

    
560
--
561
-- Name: tnrs_batch_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: -
562
--
563

    
564
ALTER TABLE ONLY tnrs
565
    ADD CONSTRAINT tnrs_batch_fkey FOREIGN KEY (batch) REFERENCES batch(id) ON UPDATE CASCADE ON DELETE CASCADE;
566

    
567

    
568
--
569
-- Name: TNRS; Type: ACL; Schema: -; Owner: -
570
--
571

    
572
REVOKE ALL ON SCHEMA "TNRS" FROM PUBLIC;
573
REVOKE ALL ON SCHEMA "TNRS" FROM bien;
574
GRANT ALL ON SCHEMA "TNRS" TO bien;
575
GRANT USAGE ON SCHEMA "TNRS" TO bien_read;
576

    
577

    
578
--
579
-- Name: tnrs; Type: ACL; Schema: TNRS; Owner: -
580
--
581

    
582
REVOKE ALL ON TABLE tnrs FROM PUBLIC;
583
REVOKE ALL ON TABLE tnrs FROM bien;
584
GRANT ALL ON TABLE tnrs TO bien;
585
GRANT SELECT ON TABLE tnrs TO bien_read;
586

    
587

    
588
--
589
-- Name: MatchedTaxon; Type: ACL; Schema: TNRS; Owner: -
590
--
591

    
592
REVOKE ALL ON TABLE "MatchedTaxon" FROM PUBLIC;
593
REVOKE ALL ON TABLE "MatchedTaxon" FROM bien;
594
GRANT ALL ON TABLE "MatchedTaxon" TO bien;
595
GRANT SELECT ON TABLE "MatchedTaxon" TO bien_read;
596

    
597

    
598
--
599
-- Name: ValidMatchedTaxon; Type: ACL; Schema: TNRS; Owner: -
600
--
601

    
602
REVOKE ALL ON TABLE "ValidMatchedTaxon" FROM PUBLIC;
603
REVOKE ALL ON TABLE "ValidMatchedTaxon" FROM bien;
604
GRANT ALL ON TABLE "ValidMatchedTaxon" TO bien;
605
GRANT SELECT ON TABLE "ValidMatchedTaxon" TO bien_read;
606

    
607

    
608
--
609
-- Name: taxon_scrub.scrubbed_unique_taxon_name.*; Type: ACL; Schema: TNRS; Owner: -
610
--
611

    
612
REVOKE ALL ON TABLE "taxon_scrub.scrubbed_unique_taxon_name.*" FROM PUBLIC;
613
REVOKE ALL ON TABLE "taxon_scrub.scrubbed_unique_taxon_name.*" FROM bien;
614
GRANT ALL ON TABLE "taxon_scrub.scrubbed_unique_taxon_name.*" TO bien;
615
GRANT SELECT ON TABLE "taxon_scrub.scrubbed_unique_taxon_name.*" TO bien_read;
616

    
617

    
618
--
619
-- Name: taxon_scrub; Type: ACL; Schema: TNRS; Owner: -
620
--
621

    
622
REVOKE ALL ON TABLE taxon_scrub FROM PUBLIC;
623
REVOKE ALL ON TABLE taxon_scrub FROM bien;
624
GRANT ALL ON TABLE taxon_scrub TO bien;
625
GRANT SELECT ON TABLE taxon_scrub TO bien_read;
626

    
627

    
628
--
629
-- PostgreSQL database dump complete
630
--
631

    
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