-- -- PostgreSQL database dump -- SET statement_timeout = 0; SET client_encoding = 'UTF8'; SET standard_conforming_strings = on; SET check_function_bodies = false; SET client_min_messages = warning; -- -- Name: TNRS; Type: SCHEMA; Schema: -; Owner: bien -- CREATE SCHEMA "TNRS"; ALTER SCHEMA "TNRS" OWNER TO bien; SET search_path = "TNRS", pg_catalog; -- -- Name: batch__fill(); Type: FUNCTION; Schema: TNRS; Owner: bien -- CREATE FUNCTION batch__fill() RETURNS trigger LANGUAGE plpgsql AS $$ BEGIN new.id_by_time = new.time_submitted; new.id = COALESCE(new.id, new.id_by_time); RETURN new; END; $$; ALTER FUNCTION "TNRS".batch__fill() OWNER TO bien; -- -- Name: family_is_homonym(text); Type: FUNCTION; Schema: TNRS; Owner: bien -- CREATE FUNCTION family_is_homonym(family text) RETURNS boolean LANGUAGE sql STABLE STRICT AS $_$ SELECT EXISTS(SELECT * FROM "IRMNG".family_homonym_epithet WHERE "taxonNameOrEpithet" = $1) $_$; ALTER FUNCTION "TNRS".family_is_homonym(family text) OWNER TO bien; -- -- Name: genus_is_homonym(text); Type: FUNCTION; Schema: TNRS; Owner: bien -- CREATE FUNCTION genus_is_homonym(genus text) RETURNS boolean LANGUAGE sql STABLE STRICT AS $_$ SELECT EXISTS(SELECT * FROM "IRMNG".genus_homonym_epithet WHERE "taxonNameOrEpithet" = $1) $_$; ALTER FUNCTION "TNRS".genus_is_homonym(genus text) OWNER TO bien; -- -- Name: score_ok(double precision); Type: FUNCTION; Schema: TNRS; Owner: bien -- CREATE FUNCTION score_ok(score double precision) RETURNS boolean LANGUAGE sql IMMUTABLE STRICT AS $_$ SELECT $1 >= 0.8 $_$; ALTER FUNCTION "TNRS".score_ok(score double precision) OWNER TO bien; -- -- Name: tnrs_populate_fields(); Type: FUNCTION; Schema: TNRS; Owner: bien -- CREATE FUNCTION tnrs_populate_fields() RETURNS trigger LANGUAGE plpgsql AS $$ DECLARE "Specific_epithet_is_plant" boolean := (CASE WHEN new."Infraspecific_epithet_matched" IS NOT NULL OR new."Infraspecific_epithet_2_matched" IS NOT NULL OR new."Specific_epithet_score" >= 0.9 -- fuzzy match THEN true ELSE NULL -- ambiguous END); never_homonym boolean = COALESCE(new."Author_score" >= 0.6, false); -- author disambiguates family_is_homonym boolean = NOT never_homonym AND "TNRS".family_is_homonym(new."Family_matched"); genus_is_homonym boolean = NOT never_homonym AND "TNRS".genus_is_homonym( new."Genus_matched" ); BEGIN new."Accepted_scientific_name" = NULLIF(concat_ws(' ' , NULLIF(NULLIF(new."Accepted_name_family", 'Unknown'), new."Accepted_name") , new."Accepted_name" , new."Accepted_name_author" ), ''); new."Max_score" = GREATEST( new."Overall_score" , new."Family_score" , new."Genus_score" , new."Specific_epithet_score" ); new."Is_homonym" = COALESCE(genus_is_homonym, family_is_homonym); new."Is_plant" = (CASE WHEN new."Family_score" = 1 AND NOT family_is_homonym -- exact match THEN true ELSE -- consider genus (CASE WHEN new."Genus_score" = 1 -- exact match THEN (CASE WHEN NOT genus_is_homonym THEN true ELSE "Specific_epithet_is_plant" END) WHEN new."Genus_score" >= 0.85 -- fuzzy match THEN "Specific_epithet_is_plant" ELSE NULL -- ambiguous END) END); RETURN new; END; $$; ALTER FUNCTION "TNRS".tnrs_populate_fields() OWNER TO bien; -- -- Name: FUNCTION tnrs_populate_fields(); Type: COMMENT; Schema: TNRS; Owner: bien -- COMMENT ON FUNCTION tnrs_populate_fields() IS 'IMPORTANT: when changing this function, you must regenerate the derived cols: UPDATE "TNRS".tnrs SET "Name_submitted" = "Name_submitted" runtime: 25 min ("5221748 rows affected, 1524228 ms execution time") VACUUM ANALYZE "TNRS".tnrs -- to remove previous rows runtime: 1 min ("62350 ms")'; SET default_tablespace = ''; SET default_with_oids = false; -- -- Name: tnrs; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace: -- CREATE TABLE tnrs ( batch text DEFAULT now() NOT NULL, "Name_number" integer NOT NULL, "Name_submitted" text NOT NULL, "Overall_score" double precision, "Name_matched" text, "Name_matched_rank" text, "Name_score" double precision, "Name_matched_author" text, "Name_matched_url" text, "Author_matched" text, "Author_score" double precision, "Family_matched" text, "Family_score" double precision, "Name_matched_accepted_family" text, "Genus_matched" text, "Genus_score" double precision, "Specific_epithet_matched" text, "Specific_epithet_score" double precision, "Infraspecific_rank" text, "Infraspecific_epithet_matched" text, "Infraspecific_epithet_score" double precision, "Infraspecific_rank_2" text, "Infraspecific_epithet_2_matched" text, "Infraspecific_epithet_2_score" double precision, "Annotations" text, "Unmatched_terms" text, "Taxonomic_status" text, "Accepted_name" text, "Accepted_name_author" text, "Accepted_name_rank" text, "Accepted_name_url" text, "Accepted_name_species" text, "Accepted_name_family" text, "Selected" text, "Source" text, "Warnings" text, "Accepted_name_lsid" text, "Accepted_scientific_name" text, "Max_score" double precision, "Is_homonym" boolean, "Is_plant" boolean ); ALTER TABLE "TNRS".tnrs OWNER TO bien; -- -- Name: TABLE tnrs; Type: COMMENT; Schema: TNRS; Owner: bien -- COMMENT ON TABLE tnrs IS 'IMPORTANT: when changing this table''s schema, you must regenerate data.sql: $ /../test_taxonomic_names/test_scrub you must also make the same changes on vegbiendev: e.g. $ make backups/TNRS.backup-remake # runtime: 3 min ("real 2m44.277s") SELECT util.set_col_types(''"TNRS".tnrs'', ARRAY[ (''col'', ''new_type'') ]::util.col_cast[]); runtime: 9 min ("531282 ms")'; -- -- Name: AcceptedTaxon; Type: VIEW; Schema: TNRS; Owner: bien -- CREATE VIEW "AcceptedTaxon" AS SELECT tnrs.batch AS "*Accepted_name.batch", tnrs."Name_submitted" AS "acceptedScientificName", tnrs."Genus_matched" AS "acceptedGenus", tnrs."Specific_epithet_matched" AS "acceptedSpecificEpithet", tnrs."Infraspecific_epithet_matched" AS "acceptedInfraspecificEpithet", tnrs."Taxonomic_status" AS "acceptedTaxonomicStatus", tnrs."Selected" AS "*Accepted_name.Selected", tnrs."Source" AS "*Accepted_name.Source", tnrs."Warnings" AS "*Accepted_name.Warnings", tnrs."Accepted_name_lsid" AS "*Accepted_name.Accepted_name_lsid" FROM tnrs; ALTER TABLE "TNRS"."AcceptedTaxon" OWNER TO bien; -- -- Name: MatchedTaxon; Type: VIEW; Schema: TNRS; Owner: bien -- CREATE VIEW "MatchedTaxon" AS SELECT tnrs.batch AS "*Name_matched.batch", tnrs."Name_submitted" AS "concatenatedScientificName", tnrs."Name_matched" AS "matchedTaxonName", tnrs."Name_matched_rank" AS "matchedTaxonRank", tnrs."Name_score" AS "*Name_matched.Name_score", tnrs."Name_matched_author" AS "matchedScientificNameAuthorship", tnrs."Name_matched_url" AS "matchedScientificNameID", tnrs."Author_score" AS "*Name_matched.Author_score", tnrs."Family_score" AS "matchedFamilyConfidence_fraction", COALESCE(tnrs."Name_matched_accepted_family", tnrs."Accepted_name_family") AS "matchedFamily", tnrs."Genus_matched" AS "matchedGenus", tnrs."Genus_score" AS "matchedGenusConfidence_fraction", tnrs."Specific_epithet_matched" AS "matchedSpecificEpithet", tnrs."Specific_epithet_score" AS "matchedSpeciesConfidence_fraction", tnrs."Infraspecific_epithet_matched" AS "matchedInfraspecificEpithet", tnrs."Infraspecific_epithet_score" AS "*Name_matched.Infraspecific_epithet_score", tnrs."Annotations" AS "identificationQualifier", tnrs."Unmatched_terms" AS "morphospeciesSuffix", tnrs."Taxonomic_status" AS "taxonomicStatus", tnrs."Accepted_name" AS "acceptedTaxonName", tnrs."Accepted_name_author" AS "acceptedScientificNameAuthorship", tnrs."Accepted_name_rank" AS "acceptedTaxonRank", tnrs."Accepted_name_url" AS "acceptedScientificNameID", tnrs."Accepted_name_species" AS "*Name_matched.Accepted_name_species", tnrs."Accepted_name_family" AS "acceptedFamily", tnrs."Selected" AS "*Name_matched.Selected", tnrs."Source" AS "*Name_matched.Source", tnrs."Warnings" AS "*Name_matched.Warnings", tnrs."Accepted_name_lsid" AS "*Name_matched.Accepted_name_lsid", tnrs."Accepted_scientific_name" AS "acceptedScientificName", tnrs."Max_score" AS "matchedTaxonConfidence_fraction" FROM tnrs; ALTER TABLE "TNRS"."MatchedTaxon" OWNER TO bien; -- -- Name: ValidMatchedTaxon; Type: VIEW; Schema: TNRS; Owner: bien -- CREATE VIEW "ValidMatchedTaxon" AS SELECT "MatchedTaxon"."*Name_matched.batch", "MatchedTaxon"."concatenatedScientificName", "MatchedTaxon"."matchedTaxonName", "MatchedTaxon"."matchedTaxonRank", "MatchedTaxon"."*Name_matched.Name_score", "MatchedTaxon"."matchedScientificNameAuthorship", "MatchedTaxon"."matchedScientificNameID", "MatchedTaxon"."*Name_matched.Author_score", "MatchedTaxon"."matchedFamilyConfidence_fraction", "MatchedTaxon"."matchedFamily", "MatchedTaxon"."matchedGenus", "MatchedTaxon"."matchedGenusConfidence_fraction", "MatchedTaxon"."matchedSpecificEpithet", "MatchedTaxon"."matchedSpeciesConfidence_fraction", "MatchedTaxon"."matchedInfraspecificEpithet", "MatchedTaxon"."*Name_matched.Infraspecific_epithet_score", "MatchedTaxon"."identificationQualifier", "MatchedTaxon"."morphospeciesSuffix", "MatchedTaxon"."taxonomicStatus", "MatchedTaxon"."acceptedTaxonName", "MatchedTaxon"."acceptedScientificNameAuthorship", "MatchedTaxon"."acceptedTaxonRank", "MatchedTaxon"."acceptedScientificNameID", "MatchedTaxon"."*Name_matched.Accepted_name_species", "MatchedTaxon"."acceptedFamily", "MatchedTaxon"."*Name_matched.Selected", "MatchedTaxon"."*Name_matched.Source", "MatchedTaxon"."*Name_matched.Warnings", "MatchedTaxon"."*Name_matched.Accepted_name_lsid", "MatchedTaxon"."acceptedScientificName", "MatchedTaxon"."matchedTaxonConfidence_fraction" FROM "MatchedTaxon" WHERE score_ok("MatchedTaxon"."matchedTaxonConfidence_fraction"); ALTER TABLE "TNRS"."ValidMatchedTaxon" OWNER TO bien; -- -- Name: VIEW "ValidMatchedTaxon"; Type: COMMENT; Schema: TNRS; Owner: bien -- COMMENT ON VIEW "ValidMatchedTaxon" IS 'to update, use * as the column list'; -- -- Name: ScrubbedTaxon; Type: VIEW; Schema: TNRS; Owner: bien -- CREATE VIEW "ScrubbedTaxon" AS SELECT "ValidMatchedTaxon"."acceptedScientificName", "ValidMatchedTaxon"."*Name_matched.batch", "ValidMatchedTaxon"."concatenatedScientificName", "ValidMatchedTaxon"."matchedTaxonName", "ValidMatchedTaxon"."matchedTaxonRank", "ValidMatchedTaxon"."*Name_matched.Name_score", "ValidMatchedTaxon"."matchedScientificNameAuthorship", "ValidMatchedTaxon"."matchedScientificNameID", "ValidMatchedTaxon"."*Name_matched.Author_score", "ValidMatchedTaxon"."matchedFamilyConfidence_fraction", "ValidMatchedTaxon"."matchedFamily", "ValidMatchedTaxon"."matchedGenus", "ValidMatchedTaxon"."matchedGenusConfidence_fraction", "ValidMatchedTaxon"."matchedSpecificEpithet", "ValidMatchedTaxon"."matchedSpeciesConfidence_fraction", "ValidMatchedTaxon"."matchedInfraspecificEpithet", "ValidMatchedTaxon"."*Name_matched.Infraspecific_epithet_score", "ValidMatchedTaxon"."identificationQualifier", "ValidMatchedTaxon"."morphospeciesSuffix", "ValidMatchedTaxon"."taxonomicStatus", "ValidMatchedTaxon"."acceptedTaxonName", "ValidMatchedTaxon"."acceptedScientificNameAuthorship", "ValidMatchedTaxon"."acceptedTaxonRank", "ValidMatchedTaxon"."acceptedScientificNameID", "ValidMatchedTaxon"."*Name_matched.Accepted_name_species", "ValidMatchedTaxon"."acceptedFamily", "ValidMatchedTaxon"."*Name_matched.Selected", "ValidMatchedTaxon"."*Name_matched.Source", "ValidMatchedTaxon"."*Name_matched.Warnings", "ValidMatchedTaxon"."*Name_matched.Accepted_name_lsid", "ValidMatchedTaxon"."matchedTaxonConfidence_fraction", "AcceptedTaxon"."*Accepted_name.batch", "AcceptedTaxon"."acceptedGenus", "AcceptedTaxon"."acceptedSpecificEpithet", "AcceptedTaxon"."acceptedInfraspecificEpithet", "AcceptedTaxon"."acceptedTaxonomicStatus", "AcceptedTaxon"."*Accepted_name.Selected", "AcceptedTaxon"."*Accepted_name.Source", "AcceptedTaxon"."*Accepted_name.Warnings", "AcceptedTaxon"."*Accepted_name.Accepted_name_lsid" FROM ("ValidMatchedTaxon" NATURAL LEFT JOIN "AcceptedTaxon"); ALTER TABLE "TNRS"."ScrubbedTaxon" OWNER TO bien; -- -- Name: VIEW "ScrubbedTaxon"; Type: COMMENT; Schema: TNRS; Owner: bien -- COMMENT ON VIEW "ScrubbedTaxon" IS 'to update, use * as the column list'; -- -- Name: Source; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace: -- CREATE TABLE "Source" ( "*row_num" integer NOT NULL, "sourceType" text DEFAULT 'aggregator'::text NOT NULL, "datasetURL" text DEFAULT 'http://tnrs.iplantcollaborative.org/TNRSapp.html'::text NOT NULL ); ALTER TABLE "TNRS"."Source" OWNER TO bien; -- -- Name: COLUMN "Source"."sourceType"; Type: COMMENT; Schema: TNRS; Owner: bien -- COMMENT ON COLUMN "Source"."sourceType" IS 'constant'; -- -- Name: COLUMN "Source"."datasetURL"; Type: COMMENT; Schema: TNRS; Owner: bien -- COMMENT ON COLUMN "Source"."datasetURL" IS 'constant'; -- -- Name: batch; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace: -- CREATE TABLE batch ( id text NOT NULL, id_by_time text, time_submitted timestamp with time zone DEFAULT now(), client_version text ); ALTER TABLE "TNRS".batch OWNER TO bien; -- -- Name: batch_download_settings; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace: -- CREATE TABLE batch_download_settings ( id text NOT NULL, "E-mail" text, "Id" text, "Job type" text, "Contains Id" boolean, "Start time" text, "Finish time" text, "TNRS version" text, "Sources selected" text, "Match threshold" double precision, "Classification" text, "Allow partial matches?" boolean, "Sort by source" boolean, "Constrain by higher taxonomy" boolean ); ALTER TABLE "TNRS".batch_download_settings OWNER TO bien; -- -- Name: TABLE batch_download_settings; Type: COMMENT; Schema: TNRS; Owner: bien -- COMMENT ON TABLE batch_download_settings IS 'stores data from http://tnrs.iplantcollaborative.org/TNRSapp.html > Submit List > results section > Download settings > settings.txt'; -- -- Name: client_version; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace: -- CREATE TABLE client_version ( id text NOT NULL, global_rev integer NOT NULL, "/lib/tnrs.py rev" integer, "/bin/tnrs_db rev" integer ); ALTER TABLE "TNRS".client_version OWNER TO bien; -- -- Name: TABLE client_version; Type: COMMENT; Schema: TNRS; Owner: bien -- COMMENT ON TABLE client_version IS 'contains svn revisions'; -- -- Name: COLUMN client_version.global_rev; Type: COMMENT; Schema: TNRS; Owner: bien -- COMMENT ON COLUMN client_version.global_rev IS 'from `svn info .` > Last Changed Rev'; -- -- Name: COLUMN client_version."/lib/tnrs.py rev"; Type: COMMENT; Schema: TNRS; Owner: bien -- COMMENT ON COLUMN client_version."/lib/tnrs.py rev" IS 'from `svn info lib/tnrs.py` > Last Changed Rev'; -- -- Name: COLUMN client_version."/bin/tnrs_db rev"; Type: COMMENT; Schema: TNRS; Owner: bien -- COMMENT ON COLUMN client_version."/bin/tnrs_db rev" IS 'from `svn info bin/tnrs_db` > Last Changed Rev'; -- -- Name: ~Source.map; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace: -- CREATE TABLE "~Source.map" ( "from" text NOT NULL, "to" text, filter text, notes text ); ALTER TABLE "TNRS"."~Source.map" OWNER TO bien; -- -- Data for Name: Source; Type: TABLE DATA; Schema: TNRS; Owner: bien -- COPY "Source" ("*row_num", "sourceType", "datasetURL") FROM stdin; \. -- -- Data for Name: batch; Type: TABLE DATA; Schema: TNRS; Owner: bien -- COPY batch (id, id_by_time, time_submitted, client_version) FROM stdin; 2013-08-27 22:02:36.042579-07 2013-08-27 22:02:36.042579-07 2013-08-27 22:02:36.042579-07 \N 2013-08-27 22:02:41.03229-07 2013-08-27 22:02:41.03229-07 2013-08-27 22:02:41.03229-07 \N 2013-08-27 22:02:43.024394-07 2013-08-27 22:02:43.024394-07 2013-08-27 22:02:43.024394-07 \N \. -- -- Data for Name: batch_download_settings; Type: TABLE DATA; Schema: TNRS; Owner: bien -- COPY batch_download_settings (id, "E-mail", "Id", "Job type", "Contains Id", "Start time", "Finish time", "TNRS version", "Sources selected", "Match threshold", "Classification", "Allow partial matches?", "Sort by source", "Constrain by higher taxonomy") FROM stdin; \. -- -- Data for Name: client_version; Type: TABLE DATA; Schema: TNRS; Owner: bien -- COPY client_version (id, global_rev, "/lib/tnrs.py rev", "/bin/tnrs_db rev") FROM stdin; \. -- -- Data for Name: tnrs; Type: TABLE DATA; Schema: TNRS; Owner: bien -- COPY tnrs (batch, "Name_number", "Name_submitted", "Overall_score", "Name_matched", "Name_matched_rank", "Name_score", "Name_matched_author", "Name_matched_url", "Author_matched", "Author_score", "Family_matched", "Family_score", "Name_matched_accepted_family", "Genus_matched", "Genus_score", "Specific_epithet_matched", "Specific_epithet_score", "Infraspecific_rank", "Infraspecific_epithet_matched", "Infraspecific_epithet_score", "Infraspecific_rank_2", "Infraspecific_epithet_2_matched", "Infraspecific_epithet_2_score", "Annotations", "Unmatched_terms", "Taxonomic_status", "Accepted_name", "Accepted_name_author", "Accepted_name_rank", "Accepted_name_url", "Accepted_name_species", "Accepted_name_family", "Selected", "Source", "Warnings", "Accepted_name_lsid", "Accepted_scientific_name", "Max_score", "Is_homonym", "Is_plant") FROM stdin; 2013-08-27 22:02:36.042579-07 0 Fam_indet. Boyle#6501 0 No suitable matches found. \N 0 \N \N \N 0 \N 0 \N \N 0 \N 0 \N \N 0 \N \N 0 \N \N \N \N \N \N \N \N \N true \N \N \N 0 \N \N 2013-08-27 22:02:36.042579-07 1 Poa annua var. eriolepis 1 Poa annua var. eriolepis variety 1 E. Desv. http://www.tropicos.org/Name/50119145 \N \N \N \N Poaceae Poa 1 annua 1 var. eriolepis 1 \N \N \N \N \N Synonym Poa annua L. species http://www.tropicos.org/Name/25509881 Poa annua Poaceae true tropicos \N Poaceae Poa annua L. 1 f t 2013-08-27 22:02:36.042579-07 2 Poa annua 1 Poa annua species 1 L. http://www.tropicos.org/Name/25509881 \N \N \N \N Poaceae Poa 1 annua 1 \N \N \N \N \N \N \N \N Accepted Poa annua L. species http://www.tropicos.org/Name/25509881 Poa annua Poaceae true tropicos \N Poaceae Poa annua L. 1 f t 2013-08-27 22:02:36.042579-07 3 Silene scouleri Hook. subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire var. grisea C.L. Hitchc. & Maguire 0.770000000000000018 Silene scouleri subsp. pringlei subspecies 0.770000000000000018 (S. Watson) C.L. Hitchc. & Maguire http://www.tropicos.org/Name/6303627 \N \N \N \N Caryophyllaceae Silene 1 scouleri 1 subsp. pringlei 1 \N \N \N \N var. grisea Accepted Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire subspecies http://www.tropicos.org/Name/6303627 Silene scouleri Caryophyllaceae true tropicos [Partial match] \N Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire 1 t t 2013-08-27 22:02:36.042579-07 4 Fabaceae Boyle#6500 0.900000000000000022 Fabaceae family 1 Lindl. http://www.tropicos.org/Name/42000184 \N \N Fabaceae 1 Fabaceae \N \N \N \N \N \N \N \N \N \N \N Boyle#6500 Accepted Fabaceae Lindl. family http://www.tropicos.org/Name/42000184 \N Fabaceae true tropicos \N Fabaceae Lindl. 1 f t 2013-08-27 22:02:36.042579-07 5 Poa annua subsp. exilis 1 Poa annua subsp. exilis subspecies 1 (Tomm. ex Freyn) Asch. & Graebn. http://www.tropicos.org/Name/50063800 \N \N \N \N Poaceae Poa 1 annua 1 subsp. exilis 1 \N \N \N \N \N Synonym Poa infirma Kunth species http://www.tropicos.org/Name/25514158 Poa infirma Poaceae true tropicos \N Poaceae Poa infirma Kunth 1 f t 2013-08-27 22:02:36.042579-07 6 Poa annua ssp. exilis 1 Poa annua subsp. exilis subspecies 1 (Tomm. ex Freyn) Asch. & Graebn. http://www.tropicos.org/Name/50063800 \N \N \N \N Poaceae Poa 1 annua 1 subsp. exilis 1 \N \N \N \N \N Synonym Poa infirma Kunth species http://www.tropicos.org/Name/25514158 Poa infirma Poaceae true tropicos \N Poaceae Poa infirma Kunth 1 f t 2013-08-27 22:02:36.042579-07 7 Poa annua subvar. minima 1 Poa annua subvar. minima subvariety 1 (Schur) Asch. & Graebn. http://www.tropicos.org/Name/50158097 \N \N \N \N Poaceae Poa 1 annua 1 subvar. minima 1 \N \N \N \N \N Accepted Poa annua subvar. minima (Schur) Asch. & Graebn. subvariety http://www.tropicos.org/Name/50158097 Poa annua Poaceae true tropicos \N Poaceae Poa annua subvar. minima (Schur) Asch. & Graebn. 1 f t 2013-08-27 22:02:36.042579-07 8 Poa annua L. 1 Poa annua species 1 L. http://www.tropicos.org/Name/25509881 L. 1 \N \N Poaceae Poa 1 annua 1 \N \N \N \N \N \N \N \N Accepted Poa annua L. species http://www.tropicos.org/Name/25509881 Poa annua Poaceae true tropicos \N Poaceae Poa annua L. 1 f t 2013-08-27 22:02:36.042579-07 9 Compositae indet. sp.1 0.900000000000000022 Compositae family 1 Giseke http://www.tropicos.org/Name/50255940 \N \N Compositae 1 Compositae \N \N \N \N \N \N \N \N \N \N \N indet. sp.1 Synonym Asteraceae Bercht. & J. Presl family http://www.tropicos.org/Name/50307371 \N Asteraceae true tropicos \N Asteraceae Bercht. & J. Presl 1 f t 2013-08-27 22:02:36.042579-07 10 Poa annua fo. lanuginosa 1 Poa annua fo. lanuginosa forma 1 Sennen http://www.tropicos.org/Name/50267771 \N \N \N \N Poaceae Poa 1 annua 1 fo. lanuginosa 1 \N \N \N \N \N Synonym Poa annua var. annua \N variety http://www.tropicos.org/Name/25517736 Poa annua Poaceae true tropicos \N Poaceae Poa annua var. annua 1 f t 2013-08-27 22:02:36.042579-07 11 Silene scouleri subsp. pringlei var. grisea C.L. Hitchc. & Maguire 0.770000000000000018 Silene scouleri subsp. pringlei subspecies 0.770000000000000018 (S. Watson) C.L. Hitchc. & Maguire http://www.tropicos.org/Name/6303627 \N \N \N \N Caryophyllaceae Silene 1 scouleri 1 subsp. pringlei 1 \N \N \N \N var. grisea Accepted Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire subspecies http://www.tropicos.org/Name/6303627 Silene scouleri Caryophyllaceae true tropicos [Partial match] \N Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire 1 t t 2013-08-27 22:02:36.042579-07 12 Fabaceae Inga "fuzzy leaf" 0.900000000000000022 Inga genus 1 Mill. http://www.tropicos.org/Name/40031040 \N \N Fabaceae 1 Fabaceae Inga 1 \N \N \N \N \N \N \N \N \N "fuzzy leaf" Accepted Inga Mill. genus http://www.tropicos.org/Name/40031040 \N Fabaceae true tropicos \N Fabaceae Inga Mill. 1 t t 2013-08-27 22:02:36.042579-07 13 Fabaceae Inga sp.3 0.900000000000000022 Inga genus 1 Mill. http://www.tropicos.org/Name/40031040 \N \N Fabaceae 1 Fabaceae Inga 1 \N \N \N \N \N \N \N \N \N sp.3 Accepted Inga Mill. genus http://www.tropicos.org/Name/40031040 \N Fabaceae true tropicos \N Fabaceae Inga Mill. 1 t t 2013-08-27 22:02:36.042579-07 14 Fabaceae unknown #2 0.900000000000000022 Fabaceae family 1 Lindl. http://www.tropicos.org/Name/42000184 \N \N Fabaceae 1 Fabaceae \N \N \N \N \N \N \N \N \N \N \N unknown #2 Accepted Fabaceae Lindl. family http://www.tropicos.org/Name/42000184 \N Fabaceae true tropicos \N Fabaceae Lindl. 1 f t 2013-08-27 22:02:41.03229-07 0 Poaceae Poa infirma Kunth 1 Poa infirma species 1 Kunth http://www.tropicos.org/Name/25514158 Kunth 1 Poaceae 1 Poaceae Poa 1 infirma 1 \N \N \N \N \N \N \N \N Accepted Poa infirma Kunth species http://www.tropicos.org/Name/25514158 Poa infirma Poaceae true tropicos \N Poaceae Poa infirma Kunth 1 f t 2013-08-27 22:02:41.03229-07 1 Fabaceae Lindl. 0.5 Fabaceae family 0.5 Lindl. http://www.tropicos.org/Name/42000184 \N \N Fabaceae 1 Fabaceae \N \N \N \N \N \N \N \N \N \N \N Lindl. Accepted Fabaceae Lindl. family http://www.tropicos.org/Name/42000184 \N Fabaceae true tropicos [Partial match] \N Fabaceae Lindl. 1 f t 2013-08-27 22:02:41.03229-07 2 Poaceae Poa annua subvar. minima (Schur) Asch. & Graebn. 1 Poa annua subvar. minima subvariety 1 (Schur) Asch. & Graebn. http://www.tropicos.org/Name/50158097 (Schur) Asch. & Graebn. 1 Poaceae 1 Poaceae Poa 1 annua 1 subvar. minima 1 \N \N \N \N \N Accepted Poa annua subvar. minima (Schur) Asch. & Graebn. subvariety http://www.tropicos.org/Name/50158097 Poa annua Poaceae true tropicos \N Poaceae Poa annua subvar. minima (Schur) Asch. & Graebn. 1 f t 2013-08-27 22:02:41.03229-07 3 Fabaceae Inga Mill. 1 Inga genus 1 Mill. http://www.tropicos.org/Name/40031040 Mill. 1 Fabaceae 1 Fabaceae Inga 1 \N \N \N \N \N \N \N \N \N \N Accepted Inga Mill. genus http://www.tropicos.org/Name/40031040 \N Fabaceae true tropicos \N Fabaceae Inga Mill. 1 f t 2013-08-27 22:02:41.03229-07 4 Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire 1 Silene scouleri subsp. pringlei subspecies 1 (S. Watson) C.L. Hitchc. & Maguire http://www.tropicos.org/Name/6303627 (S. Watson) C.L. Hitchc. & Maguire 1 Caryophyllaceae 1 Caryophyllaceae Silene 1 scouleri 1 subsp. pringlei 1 \N \N \N \N \N Accepted Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire subspecies http://www.tropicos.org/Name/6303627 Silene scouleri Caryophyllaceae true tropicos \N Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire 1 f t 2013-08-27 22:02:41.03229-07 5 Poaceae Poa annua L. 1 Poa annua species 1 L. http://www.tropicos.org/Name/25509881 L. 1 Poaceae 1 Poaceae Poa 1 annua 1 \N \N \N \N \N \N \N \N Accepted Poa annua L. species http://www.tropicos.org/Name/25509881 Poa annua Poaceae true tropicos \N Poaceae Poa annua L. 1 f t 2013-08-27 22:02:41.03229-07 6 Asteraceae Bercht. & J. Presl 0.400000000000000022 Asteraceae family 0.5 \N http://compositae.landcareresearch.co.nz/default.aspx \N \N Asteraceae 1 \N \N \N \N \N \N \N \N \N \N \N \N Bercht. & J. Presl Accepted Asteraceae \N family http://compositae.landcareresearch.co.nz/default.aspx \N \N true gcc [Partial match] \N Asteraceae 1 f t 2013-08-27 22:02:41.03229-07 7 Poaceae Poa annua var. annua 1 Poa annua var. annua variety 1 \N http://www.tropicos.org/Name/25517736 \N \N Poaceae 1 Poaceae Poa 1 annua 1 var. annua 1 \N \N \N \N \N Accepted Poa annua var. annua \N variety http://www.tropicos.org/Name/25517736 Poa annua Poaceae true tropicos \N Poaceae Poa annua var. annua 1 f t 2013-08-27 22:02:43.024394-07 0 Asteraceae 1 Asteraceae family 1 \N http://compositae.landcareresearch.co.nz/default.aspx \N \N Asteraceae 1 \N \N \N \N \N \N \N \N \N \N \N \N \N Accepted Asteraceae \N family http://compositae.landcareresearch.co.nz/default.aspx \N \N true gcc \N Asteraceae 1 f t \. -- -- Data for Name: ~Source.map; Type: TABLE DATA; Schema: TNRS; Owner: bien -- COPY "~Source.map" ("from", "to", filter, notes) FROM stdin; row_num *row_num \N \N :aggregator sourceType \N \N :http://tnrs.iplantcollaborative.org/TNRSapp.html datasetURL \N \N \. -- -- Name: Source_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace: -- ALTER TABLE ONLY "Source" ADD CONSTRAINT "Source_pkey" PRIMARY KEY ("*row_num"); -- -- Name: batch_download_settings_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace: -- ALTER TABLE ONLY batch_download_settings ADD CONSTRAINT batch_download_settings_pkey PRIMARY KEY (id); -- -- Name: batch_id_by_time_key; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace: -- ALTER TABLE ONLY batch ADD CONSTRAINT batch_id_by_time_key UNIQUE (id_by_time); -- -- Name: batch_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace: -- ALTER TABLE ONLY batch ADD CONSTRAINT batch_pkey PRIMARY KEY (id); -- -- Name: client_version_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace: -- ALTER TABLE ONLY client_version ADD CONSTRAINT client_version_pkey PRIMARY KEY (id); -- -- Name: tnrs_Name_submitted_key; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace: -- ALTER TABLE ONLY tnrs ADD CONSTRAINT "tnrs_Name_submitted_key" UNIQUE ("Name_submitted"); -- -- Name: tnrs_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace: -- ALTER TABLE ONLY tnrs ADD CONSTRAINT tnrs_pkey PRIMARY KEY (batch, "Name_number"); -- -- Name: ~Source.map_from_key; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace: -- ALTER TABLE ONLY "~Source.map" ADD CONSTRAINT "~Source.map_from_key" UNIQUE ("from"); -- -- Name: ~Source.map_to_key; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace: -- ALTER TABLE ONLY "~Source.map" ADD CONSTRAINT "~Source.map_to_key" UNIQUE ("to"); -- -- Name: tnrs_score_ok; Type: INDEX; Schema: TNRS; Owner: bien; Tablespace: -- CREATE UNIQUE INDEX tnrs_score_ok ON tnrs USING btree ("Name_submitted") WHERE score_ok("Max_score"); -- -- Name: batch__fill; Type: TRIGGER; Schema: TNRS; Owner: bien -- CREATE TRIGGER batch__fill BEFORE INSERT OR UPDATE ON batch FOR EACH ROW EXECUTE PROCEDURE batch__fill(); -- -- Name: map_filter_insert; Type: TRIGGER; Schema: TNRS; Owner: bien -- CREATE TRIGGER map_filter_insert BEFORE INSERT ON "~Source.map" FOR EACH ROW EXECUTE PROCEDURE util.map_filter_insert(); ALTER TABLE "~Source.map" DISABLE TRIGGER map_filter_insert; -- -- Name: tnrs_populate_fields; Type: TRIGGER; Schema: TNRS; Owner: bien -- CREATE TRIGGER tnrs_populate_fields BEFORE INSERT OR UPDATE ON tnrs FOR EACH ROW EXECUTE PROCEDURE tnrs_populate_fields(); -- -- Name: batch_client_version_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: bien -- ALTER TABLE ONLY batch ADD CONSTRAINT batch_client_version_fkey FOREIGN KEY (client_version) REFERENCES client_version(id) ON UPDATE CASCADE ON DELETE CASCADE; -- -- Name: batch_download_settings_id_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: bien -- ALTER TABLE ONLY batch_download_settings ADD CONSTRAINT batch_download_settings_id_fkey FOREIGN KEY (id) REFERENCES batch(id) ON UPDATE CASCADE ON DELETE CASCADE; -- -- Name: tnrs_batch_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: bien -- ALTER TABLE ONLY tnrs ADD CONSTRAINT tnrs_batch_fkey FOREIGN KEY (batch) REFERENCES batch(id) ON UPDATE CASCADE ON DELETE CASCADE; -- -- Name: TNRS; Type: ACL; Schema: -; Owner: bien -- REVOKE ALL ON SCHEMA "TNRS" FROM PUBLIC; REVOKE ALL ON SCHEMA "TNRS" FROM bien; GRANT ALL ON SCHEMA "TNRS" TO bien; GRANT USAGE ON SCHEMA "TNRS" TO bien_read; -- -- Name: tnrs; Type: ACL; Schema: TNRS; Owner: bien -- REVOKE ALL ON TABLE tnrs FROM PUBLIC; REVOKE ALL ON TABLE tnrs FROM bien; GRANT ALL ON TABLE tnrs TO bien; GRANT SELECT ON TABLE tnrs TO bien_read; -- -- PostgreSQL database dump complete --