Revision 1353
Added by Aaron Marcuse-Kubitza over 12 years ago
| VegBIEN.organisms.csv | ||
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| 31 | 31 |
intercept_cm,/aggregateoccurrence/linecover,"Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance." |
| 32 | 32 |
coll_firstname,/aggregateoccurrence/verbatimcollectorname/_name/first,Brad: See comment above |
| 33 | 33 |
coll_lastname,/aggregateoccurrence/verbatimcollectorname/_name/last,"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
| 34 |
specific_authority,"/taxondetermination[role=computer,*_id/plantconcept/*_id/plantname/rank=authority]:[iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
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family,"/taxondetermination[role=computer,*_id/plantconcept/*_id/plantname/rank=family]:[iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
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genus,"/taxondetermination[role=computer,*_id/plantconcept/*_id/plantname/rank=genus]:[iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
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specific_epithet,"/taxondetermination[role=computer,*_id/plantconcept/*_id/plantname/rank=species]:[iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
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infra_rank_1,"/taxondetermination[role=computer,*_id/plantconcept/*_id/plantname/rank=subspecies]/*_id/plantconcept/*_id/*/plantname/_name/first",
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infra_ep_1,"/taxondetermination[role=computer,*_id/plantconcept/*_id/plantname/rank=subspecies]:[iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/last",
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cf_aff,"/taxondetermination[role=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/{taxonFit,*_id/plantconcept/*_id/*/plantname/_name/middle}","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
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orig_species,"/taxondetermination[role=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/last",Brad: OMIT
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orig_family,"/taxondetermination[role=identifier,*_id/plantconcept/*_id/plantname/rank=family]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
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infra_rank_1,"/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first",
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specific_authority,"/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
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infra_ep_1,"/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/last",
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specific_epithet,"/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",
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genus,"/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",
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family,"/taxondetermination[role=computer]:[iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",
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cf_aff,"/taxondetermination[role=identifier]/{taxonFit,*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/middle}","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
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orig_species,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname/_name/last",Brad: OMIT
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orig_family,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",Brad: OMIT
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| 43 | 43 |
collector_code,,Brad: OMIT |
| 44 | 44 |
comments,,Brad: OMIT |
| 45 | 45 |
fam_status,,Brad: OMIT. This will be determined later by using TNRS. |
Also available in: Unified diff
VegBIEN mappings: plantnames: Nest taxons hierarchically using plantname.parent_id. Mappings using _forEach: Append a "," to the `in` list so that mappings will sort from shortest to longest `in` list ("]" comes after "," in ASCII, causing this not to happen without the trailing ",").