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Name Size Revision Age Author Comment
  Source 11396 about 11 years Aaron Marcuse-Kubitza fix: bin/map: put template: comment out the "Pu...
  _src 11705 about 11 years Aaron Marcuse-Kubitza copyright scrub: inputs/: removed data provider...
  logs 8801 over 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: SVN: add, %/add: */logs:...
  names.src 12029 almost 11 years Aaron Marcuse-Kubitza inputs/.geoscrub/county_centroids/test.xml.ref,...
  nodes 11863 almost 11 years Aaron Marcuse-Kubitza bugfix: inputs/.NCBI/import_order.txt: added no...
  nodes.src 12029 almost 11 years Aaron Marcuse-Kubitza inputs/.geoscrub/county_centroids/test.xml.ref,...
  verify 13401 over 10 years Aaron Marcuse-Kubitza inputs/input.Makefile: add: verify/: also svn:i...
Makefile 27 Bytes 10098 over 11 years Aaron Marcuse-Kubitza inputs/.NCBI/: added new-style import runscript...
import_order.txt 33 Bytes 11863 almost 11 years Aaron Marcuse-Kubitza bugfix: inputs/.NCBI/import_order.txt: added no...
run 87 Bytes 10098 over 11 years Aaron Marcuse-Kubitza inputs/.NCBI/: added new-style import runscript...
table.run 81 Bytes 10098 over 11 years Aaron Marcuse-Kubitza inputs/.NCBI/: added new-style import runscript...
  • svn:ignore: *

Latest revisions

# Date Author Comment
13401 05/03/2014 02:03 PM Aaron Marcuse-Kubitza

inputs/input.Makefile: add: verify/: also svn:ignore *.log

12029 02/02/2014 11:10 PM Aaron Marcuse-Kubitza

inputs/.geoscrub/county_centroids/test.xml.ref, inputs/.NCBI/{names.src,nodes.src}/test.xml.ref: accepted test outputs (generated now that these tables are in import_order.txt)

12018 02/02/2014 12:49 AM Aaron Marcuse-Kubitza

inputs/input.Makefile: add!: verify/: also svn:ignore *.tsv, *.txt

11970 01/20/2014 11:33 AM Aaron Marcuse-Kubitza

moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).

11903 12/11/2013 10:40 PM Aaron Marcuse-Kubitza

bugfix: inputs/{.NCBI,CTFS}/*.src/: added _no_import because these tables are left-joined and should not be imported separately

11863 12/06/2013 06:12 AM Aaron Marcuse-Kubitza

bugfix: inputs/.NCBI/import_order.txt: added nodes.src, names.src so that these would be installed under new-style import as well. this means that their columns will now be automapped, requiring the names to be renamed to VegCore names in nodes/create.sql.

11705 11/21/2013 12:24 AM Aaron Marcuse-Kubitza

copyright scrub: inputs/: removed data provider-owned schema and documentation files, which are not BIEN copyright and should not be part of what is submitted for open-sourcing. these files will remain accessible via the web interface (fs.vegpath.org), but will not be in the repository.

11396 10/21/2013 07:14 PM Aaron Marcuse-Kubitza

fix: bin/map: put template: comment out the "Put template:" label so that the output is valid XML, and displays properly in a browser rather than showing a syntax error

11107 09/29/2013 08:58 PM Aaron Marcuse-Kubitza

bugfix: mappings/VegCore-VegBIEN.csv: nest all taxonoccurrences inside a stratum event, so that the parent locationevent is always fully populated before child locationevents point to it. (previously, a stub parent event was created when the child event was imported first, which blocked the fully-populated parent event from being inserted later on.) this uses auto-folding (for VegBank/CVS) and auto-forwarding (for other datasources) to prune empty stratum events for taxonoccurrences that don't have strata. (see wiki.vegpath.org/Auto-folding, wiki.vegpath.org/Auto-forwarding for more info about these normalization techniques.) note that the inserted row counts stay exactly the same for all datasources except VegBank (which was being fixed), indicating that this signficant change to the mappings did not change the semantics of the import of taxonoccurrences.

10866 09/04/2013 11:06 PM Aaron Marcuse-Kubitza

inputs/*/*/test.xml.ref: updated source.shortname for new datasource name, which now starts out with .new suffix

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