--
-- PostgreSQL database dump
--

SET statement_timeout = 0;
SET lock_timeout = 0;
SET client_encoding = 'UTF8';
SET standard_conforming_strings = on;
SET check_function_bodies = false;
SET client_min_messages = warning;

--
-- Name: TNRS; Type: SCHEMA; Schema: -; Owner: -
--

--CREATE SCHEMA "TNRS";


--
-- Name: SCHEMA "TNRS"; Type: COMMENT; Schema: -; Owner: -
--

COMMENT ON SCHEMA "TNRS" IS '
IMPORTANT: when changing this schema, you must also make the same changes on vegbiendev:
on vegbiendev:
# back up existing TNRS schema (in case of an accidental incorrect change):
$ make backups/TNRS.backup-remake # runtime: 3 min ("real 2m44.277s")
$ svn up
$ svn di
# make the changes shown in the diff
## to change column types:
SELECT util.set_col_types(''"TNRS".taxon_match'', ARRAY[
  (''col'', ''new_type'')
]::util.col_cast[]); -- runtime: 9 min ("531282 ms")
$ rm=1 inputs/.TNRS/schema.sql.run
# repeat until `svn di` shows no diff
# back up new TNRS schema:
$ make backups/TNRS.backup-remake # runtime: 3 min ("real 2m44.277s")
';


SET search_path = "TNRS", pg_catalog;

--
-- Name: batch__fill(); Type: FUNCTION; Schema: TNRS; Owner: -
--

CREATE FUNCTION batch__fill() RETURNS trigger
    LANGUAGE plpgsql
    AS $$
BEGIN
	new.id_by_time = new.time_submitted;
	new.id = COALESCE(new.id, new.id_by_time);
	RETURN new;
END;
$$;


--
-- Name: family_is_homonym(text); Type: FUNCTION; Schema: TNRS; Owner: -
--

CREATE FUNCTION family_is_homonym(family text) RETURNS boolean
    LANGUAGE sql STABLE STRICT
    AS $_$
SELECT EXISTS(SELECT * FROM "IRMNG".family_homonym_epithet WHERE "taxonNameOrEpithet" = $1)
$_$;


--
-- Name: genus_is_homonym(text); Type: FUNCTION; Schema: TNRS; Owner: -
--

CREATE FUNCTION genus_is_homonym(genus text) RETURNS boolean
    LANGUAGE sql STABLE STRICT
    AS $_$
SELECT EXISTS(SELECT * FROM "IRMNG".genus_homonym_epithet WHERE "taxonNameOrEpithet" = $1)
$_$;


--
-- Name: map_taxonomic_status(text, text); Type: FUNCTION; Schema: TNRS; Owner: -
--

CREATE FUNCTION map_taxonomic_status(taxonomic_status_verbatim text, accepted_taxon_name_no_author text) RETURNS text
    LANGUAGE sql IMMUTABLE
    AS $_$
/* from http://wiki.vegpath.org/2013-11-14_conference_call#taxonomic-fields:
"taxonomic_status should be accepted instead of synonym when an accepted name is
available (this is not always the case when a name is marked as a synonym)" */
SELECT CASE WHEN $2 IS NOT NULL THEN 'accepted' ELSE lower($1) END
$_$;


--
-- Name: remove_prefix(text, text, boolean, boolean); Type: FUNCTION; Schema: TNRS; Owner: -
--

CREATE FUNCTION remove_prefix(prefix text, str text, require boolean DEFAULT true, case_sensitive boolean DEFAULT true) RETURNS text
    LANGUAGE sql IMMUTABLE
    AS $$
SELECT util.remove_prefix(prefix, str, require, case_sensitive)
$$;


--
-- Name: FUNCTION remove_prefix(prefix text, str text, require boolean, case_sensitive boolean); Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON FUNCTION remove_prefix(prefix text, str text, require boolean, case_sensitive boolean) IS '
wrapper that prevents views from getting dropped when the util schema is reinstalled
';


--
-- Name: taxon_match__batch_begin(); Type: FUNCTION; Schema: TNRS; Owner: -
--

CREATE FUNCTION taxon_match__batch_begin() RETURNS trigger
    LANGUAGE plpgsql
    AS $$
BEGIN
	PERFORM util.seq__reset('pg_temp.taxon_match__match_num__seq', 0);
	RETURN NULL;
END;
$$;


--
-- Name: taxon_match__fill(); Type: FUNCTION; Schema: TNRS; Owner: -
--

CREATE FUNCTION taxon_match__fill() RETURNS trigger
    LANGUAGE plpgsql
    AS $$
BEGIN
	DECLARE
		"Specific_epithet_is_plant" boolean :=
			(CASE
			WHEN   new."*Infraspecific_epithet_matched"	 IS NOT NULL
				OR new."*Infraspecific_epithet_2_matched" IS NOT NULL
				OR new."*Specific_epithet_score" >= 0.9 -- fuzzy match
				THEN true
			ELSE NULL -- ambiguous
			END);
		never_homonym boolean = COALESCE(new."*Author_score" >= 0.6, false);
			-- author disambiguates
		family_is_homonym boolean = NOT never_homonym
			AND "TNRS".family_is_homonym(new."*Family_matched");
		genus_is_homonym  boolean = NOT never_homonym
			AND "TNRS".genus_is_homonym(new."*Genus_matched");
	BEGIN
		/* exclude homonyms because these are not valid matches (TNRS provides a
		name, but the name is not meaningful because it is not unambiguous) */
		new.is_valid_match = new."*Taxonomic_status" != 'Invalid'
			AND COALESCE(CASE
			WHEN new."*Family_score" = 1 AND NOT family_is_homonym -- exact match
				THEN true
			ELSE -- consider genus
				(CASE
				WHEN new."*Genus_score" =  1	   -- exact match
					THEN
					(CASE
					WHEN NOT genus_is_homonym THEN true
					ELSE "Specific_epithet_is_plant"
					END)
				WHEN new."*Genus_score" >= 0.85 -- fuzzy match
					THEN "Specific_epithet_is_plant"
				ELSE NULL -- ambiguous
				END)
			END, false);
	END;
	
	DECLARE
		matched_taxon_name_with_author text = NULLIF(concat_ws(' '
			, NULLIF(NULLIF(new."*Name_matched_accepted_family", 'Unknown'),
				new."*Name_matched")
			, NULLIF(new."*Name_matched", 'No suitable matches found.')
			, new."*Name_matched_author"
			), '');
		accepted_taxon_name_with_author text = NULLIF(concat_ws(' '
			, NULLIF(NULLIF(new."*Accepted_name_family", 'Unknown'),
				new."*Accepted_name")
			, new."*Accepted_name"
			, new."*Accepted_name_author"
			), '');
	BEGIN
		new.scrubbed_unique_taxon_name = COALESCE(
			accepted_taxon_name_with_author, matched_taxon_name_with_author);
	END;
	
	RETURN new;
END;
$$;


--
-- Name: FUNCTION taxon_match__fill(); Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON FUNCTION taxon_match__fill() IS '
IMPORTANT: when changing this function, you must regenerate the derived cols:
UPDATE "TNRS".taxon_match SET "Name_submitted" = "Name_submitted"
runtime: 30 min ("5564082 rows affected, 1918900 ms execution time")
VACUUM ANALYZE "TNRS".taxon_match -- to remove previous rows
runtime: 1.5 min ("92633 ms")
';


--
-- Name: taxon_match__fill_derived(); Type: FUNCTION; Schema: TNRS; Owner: -
--

CREATE FUNCTION taxon_match__fill_derived() RETURNS trigger
    LANGUAGE plpgsql
    AS $$
BEGIN
	-- clear derived cols so old values won't be used in calculations
	new."[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org" = NULL;
	new."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org" = NULL;
	new."matched~Name[_no_author]___@TNRS__@vegpath.org" = NULL;
	new."[matched_]scientificName[_with_author]__@DwC__@vegpath.org" = NULL;
	new.matched_has_accepted = NULL;
	new."Accepted_family__@TNRS__@vegpath.org" = NULL;
	new."Accepted_species[_binomial]__@TNRS__@vegpath.org" = NULL;
	new."__accepted_{genus,specific_epithet,infra_{rank,epithet}}" = NULL;
	new."[accepted_]genus__@DwC__@vegpath.org" = NULL;
	new."[accepted_]specificEpithet__@DwC__@vegpath.org" = NULL;
	new."[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" = NULL;
	new."__accepted_infraspecific_{rank,epithet}" = NULL;
	new."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" = NULL;
	new."[accepted_]infraspecificEpithet__@DwC__@vegpath.org" = NULL;
	new."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org" = NULL;
	new."[scrubbed_]taxonomicStatus__@DwC__@vegpath.org" = NULL;
	new."[scrubbed_]taxonRank__@DwC__@vegpath.org" = NULL;
	new."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org" = NULL;
	new."[scrubbed_]genus__@DwC__@vegpath.org" = NULL;
	new."[scrubbed_]specificEpithet__@DwC__@vegpath.org" = NULL;
	new."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org" = NULL;
	new."[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" = NULL;
	new."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" = NULL;
	new."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org" = NULL;
	new."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org" = NULL;
	new."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org" = NULL;
	new."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org" = NULL;
	
	-- populate derived cols
	new."[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org" = (SELECT "*Unmatched_terms" FROM (SELECT new.*) new);
	new."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org" = (SELECT ("*Genus_matched" || ' '::text) || "*Specific_epithet_matched" FROM (SELECT new.*) new);
	new."matched~Name[_no_author]___@TNRS__@vegpath.org" = (SELECT NULLIF("*Name_matched", 'No suitable matches found.'::text) FROM (SELECT new.*) new);
	new."[matched_]scientificName[_with_author]__@DwC__@vegpath.org" = (SELECT "matched~Name[_no_author]___@TNRS__@vegpath.org" || COALESCE((' '::text || "*Name_matched_author"), ''::text) FROM (SELECT new.*) new);
	new.matched_has_accepted = (SELECT "*Accepted_name" IS NOT NULL FROM (SELECT new.*) new);
	new."Accepted_family__@TNRS__@vegpath.org" = (SELECT COALESCE("*Accepted_name_family",
CASE
    WHEN ("*Accepted_name_rank" = 'family'::text) THEN "*Accepted_name"
    ELSE NULL::text
END) FROM (SELECT new.*) new);
	new."Accepted_species[_binomial]__@TNRS__@vegpath.org" = (SELECT rtrim("*Accepted_name_species", ' '::text) FROM (SELECT new.*) new);
	new."__accepted_{genus,specific_epithet,infra_{rank,epithet}}" = (SELECT regexp_split_to_array("*Accepted_name", ' '::text) FROM (SELECT new.*) new);
	new."[accepted_]genus__@DwC__@vegpath.org" = (SELECT "__accepted_{genus,specific_epithet,infra_{rank,epithet}}"[1] FROM (SELECT new.*) new);
	new."[accepted_]specificEpithet__@DwC__@vegpath.org" = (SELECT "__accepted_{genus,specific_epithet,infra_{rank,epithet}}"[2] FROM (SELECT new.*) new);
	new."[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" = (SELECT CASE
    WHEN ("*Accepted_name_rank" = 'family'::text) THEN concat_ws(' '::text, "Accepted_family__@TNRS__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
    WHEN ("*Accepted_name_rank" = 'genus'::text) THEN concat_ws(' '::text, "[accepted_]genus__@DwC__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
    ELSE "Accepted_species[_binomial]__@TNRS__@vegpath.org"
END FROM (SELECT new.*) new);
	new."__accepted_infraspecific_{rank,epithet}" = (SELECT NULLIF("__accepted_{genus,specific_epithet,infra_{rank,epithet}}"[3:4], '{}'::text[]) FROM (SELECT new.*) new);
	new."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" = (SELECT "__accepted_infraspecific_{rank,epithet}"[1] FROM (SELECT new.*) new);
	new."[accepted_]infraspecificEpithet__@DwC__@vegpath.org" = (SELECT "__accepted_infraspecific_{rank,epithet}"[2] FROM (SELECT new.*) new);
	new."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org" = (SELECT "*Accepted_name" || COALESCE((' '::text || "*Accepted_name_author"), ''::text) FROM (SELECT new.*) new);
	new."[scrubbed_]taxonomicStatus__@DwC__@vegpath.org" = (SELECT "TNRS".map_taxonomic_status("*Taxonomic_status", "*Accepted_name") FROM (SELECT new.*) new);
	new."[scrubbed_]taxonRank__@DwC__@vegpath.org" = (SELECT CASE
    WHEN matched_has_accepted THEN "*Accepted_name_rank"
    ELSE "*Name_matched_rank"
END FROM (SELECT new.*) new);
	new."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org" = (SELECT CASE
    WHEN matched_has_accepted THEN "Accepted_family__@TNRS__@vegpath.org"
    ELSE "*Name_matched_accepted_family"
END FROM (SELECT new.*) new);
	new."[scrubbed_]genus__@DwC__@vegpath.org" = (SELECT CASE
    WHEN matched_has_accepted THEN "[accepted_]genus__@DwC__@vegpath.org"
    ELSE "*Genus_matched"
END FROM (SELECT new.*) new);
	new."[scrubbed_]specificEpithet__@DwC__@vegpath.org" = (SELECT CASE
    WHEN matched_has_accepted THEN "[accepted_]specificEpithet__@DwC__@vegpath.org"
    ELSE "*Specific_epithet_matched"
END FROM (SELECT new.*) new);
	new."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org" = (SELECT CASE
    WHEN matched_has_accepted THEN "Accepted_species[_binomial]__@TNRS__@vegpath.org"
    ELSE "[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org"
END FROM (SELECT new.*) new);
	new."[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" = (SELECT CASE
    WHEN ("[scrubbed_]taxonRank__@DwC__@vegpath.org" = 'family'::text) THEN concat_ws(' '::text, "[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
    WHEN ("[scrubbed_]taxonRank__@DwC__@vegpath.org" = 'genus'::text) THEN concat_ws(' '::text, "[scrubbed_]genus__@DwC__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
    ELSE "[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org"
END FROM (SELECT new.*) new);
	new."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" = (SELECT CASE
    WHEN matched_has_accepted THEN "[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org"
    ELSE "*Infraspecific_rank"
END FROM (SELECT new.*) new);
	new."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org" = (SELECT CASE
    WHEN matched_has_accepted THEN "[accepted_]specificEpithet__@DwC__@vegpath.org"
    ELSE "*Infraspecific_epithet_matched"
END FROM (SELECT new.*) new);
	new."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org" = (SELECT CASE
    WHEN matched_has_accepted THEN "*Accepted_name"
    ELSE "matched~Name[_no_author]___@TNRS__@vegpath.org"
END FROM (SELECT new.*) new);
	new."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org" = (SELECT CASE
    WHEN matched_has_accepted THEN "*Accepted_name_author"
    ELSE "*Name_matched_author"
END FROM (SELECT new.*) new);
	new."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org" = (SELECT CASE
    WHEN matched_has_accepted THEN "[accepted_]scientificName[_with_author]__@DwC__@vegpath.org"
    ELSE "[matched_]scientificName[_with_author]__@DwC__@vegpath.org"
END FROM (SELECT new.*) new);
	
	RETURN new;
END;
$$;


--
-- Name: FUNCTION taxon_match__fill_derived(); Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON FUNCTION taxon_match__fill_derived() IS '
autogenerated, do not edit

to regenerate:
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
';


--
-- Name: taxon_match__match_num__fill(); Type: FUNCTION; Schema: TNRS; Owner: -
--

CREATE FUNCTION taxon_match__match_num__fill() RETURNS trigger
    LANGUAGE plpgsql
    AS $$
BEGIN
	IF new.match_num IS NULL THEN
		new.match_num = "TNRS".taxon_match__match_num__next();
	END IF;
	RETURN new;
END;
$$;


--
-- Name: taxon_match__match_num__next(); Type: FUNCTION; Schema: TNRS; Owner: -
--

CREATE FUNCTION taxon_match__match_num__next() RETURNS bigint
    LANGUAGE sql
    AS $$
SELECT nextval('pg_temp.taxon_match__match_num__seq');
$$;


--
-- Name: taxon_match_input__copy_to__insert(); Type: FUNCTION; Schema: TNRS; Owner: -
--

CREATE FUNCTION taxon_match_input__copy_to__insert() RETURNS trigger
    LANGUAGE plpgsql
    AS $$
BEGIN
	INSERT INTO "TNRS".taxon_match_input SELECT new.*;
	RETURN NULL;
END;
$$;


--
-- Name: taxon_name_is_safe(text); Type: FUNCTION; Schema: TNRS; Owner: -
--

CREATE FUNCTION taxon_name_is_safe(taxon_name text) RETURNS boolean
    LANGUAGE sql IMMUTABLE
    AS $_$
SELECT NOT ($1 = ANY("TNRS".unsafe_taxon_names()))
$_$;


--
-- Name: unsafe_taxon_names(); Type: FUNCTION; Schema: TNRS; Owner: -
--

CREATE FUNCTION unsafe_taxon_names() RETURNS text[]
    LANGUAGE sql IMMUTABLE
    AS $$
SELECT ARRAY[
]::text[]
$$;


SET default_tablespace = '';

SET default_with_oids = false;

--
-- Name: batch; Type: TABLE; Schema: TNRS; Owner: -; Tablespace: 
--

CREATE TABLE batch (
    id text NOT NULL,
    id_by_time text,
    time_submitted timestamp with time zone DEFAULT now(),
    client_version text
);


--
-- Name: batch_download_settings; Type: TABLE; Schema: TNRS; Owner: -; Tablespace: 
--

CREATE TABLE batch_download_settings (
    id text NOT NULL,
    "E-mail" text,
    "Id" text,
    "Job type" text,
    "Contains Id" boolean,
    "Start time" text,
    "Finish time" text,
    "TNRS version" text,
    "Sources selected" text,
    "Match threshold" double precision,
    "Classification" text,
    "Allow partial matches?" boolean,
    "Sort by source" boolean,
    "Constrain by higher taxonomy" boolean
);


--
-- Name: TABLE batch_download_settings; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON TABLE batch_download_settings IS '
stores data from http://tnrs.iplantcollaborative.org/TNRSapp.html > Submit List > results section > Download settings > settings.txt
';


--
-- Name: client_version; Type: TABLE; Schema: TNRS; Owner: -; Tablespace: 
--

CREATE TABLE client_version (
    id text NOT NULL,
    global_rev integer NOT NULL,
    "/lib/tnrs.py rev" integer,
    "/bin/tnrs_db rev" integer
);


--
-- Name: TABLE client_version; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON TABLE client_version IS '
contains svn revisions
';


--
-- Name: COLUMN client_version.global_rev; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN client_version.global_rev IS '
from `svn info .` > Last Changed Rev
';


--
-- Name: COLUMN client_version."/lib/tnrs.py rev"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN client_version."/lib/tnrs.py rev" IS '
from `svn info lib/tnrs.py` > Last Changed Rev
';


--
-- Name: COLUMN client_version."/bin/tnrs_db rev"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN client_version."/bin/tnrs_db rev" IS '
from `svn info bin/tnrs_db` > Last Changed Rev
';


--
-- Name: taxon_match; Type: TABLE; Schema: TNRS; Owner: -; Tablespace: 
--

CREATE TABLE taxon_match (
    batch text DEFAULT now() NOT NULL,
    match_num integer NOT NULL,
    "*Name_number" integer NOT NULL,
    "*Name_submitted" text NOT NULL,
    "*Overall_score" double precision,
    "*Name_matched" text,
    "*Name_matched_rank" text,
    "*Name_score" double precision,
    "*Name_matched_author" text,
    "*Name_matched_url" text,
    "*Author_matched" text,
    "*Author_score" double precision,
    "*Family_matched" text,
    "*Family_score" double precision,
    "*Name_matched_accepted_family" text,
    "*Genus_matched" text,
    "*Genus_score" double precision,
    "*Specific_epithet_matched" text,
    "*Specific_epithet_score" double precision,
    "*Infraspecific_rank" text,
    "*Infraspecific_epithet_matched" text,
    "*Infraspecific_epithet_score" double precision,
    "*Infraspecific_rank_2" text,
    "*Infraspecific_epithet_2_matched" text,
    "*Infraspecific_epithet_2_score" double precision,
    "*Annotations" text,
    "*Unmatched_terms" text,
    "*Taxonomic_status" text,
    "*Accepted_name" text,
    "*Accepted_name_author" text,
    "*Accepted_name_rank" text,
    "*Accepted_name_url" text,
    "*Accepted_name_species" text,
    "*Accepted_name_family" text,
    "*Selected" text,
    "*Source" text,
    "*Warnings" text,
    "*Accepted_name_lsid" text,
    is_valid_match boolean NOT NULL,
    scrubbed_unique_taxon_name text,
    "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org" text,
    "[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org" text,
    "matched~Name[_no_author]___@TNRS__@vegpath.org" text,
    "[matched_]scientificName[_with_author]__@DwC__@vegpath.org" text,
    matched_has_accepted boolean,
    "Accepted_family__@TNRS__@vegpath.org" text,
    "Accepted_species[_binomial]__@TNRS__@vegpath.org" text,
    "__accepted_{genus,specific_epithet,infra_{rank,epithet}}" text[],
    "[accepted_]genus__@DwC__@vegpath.org" text,
    "[accepted_]specificEpithet__@DwC__@vegpath.org" text,
    "[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" text,
    "__accepted_infraspecific_{rank,epithet}" text[],
    "[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" text,
    "[accepted_]infraspecificEpithet__@DwC__@vegpath.org" text,
    "[accepted_]scientificName[_with_author]__@DwC__@vegpath.org" text,
    "[scrubbed_]taxonomicStatus__@DwC__@vegpath.org" text,
    "[scrubbed_]taxonRank__@DwC__@vegpath.org" text,
    "[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org" text,
    "[scrubbed_]genus__@DwC__@vegpath.org" text,
    "[scrubbed_]specificEpithet__@DwC__@vegpath.org" text,
    "[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org" text,
    "[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" text,
    "[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" text,
    "[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org" text,
    "[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org" text,
    "[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org" text,
    "[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org" text,
    CONSTRAINT "Accepted_family__@TNRS__@vegpath.org" CHECK ((NOT ("Accepted_family__@TNRS__@vegpath.org" IS DISTINCT FROM COALESCE("*Accepted_name_family",
CASE
    WHEN ("*Accepted_name_rank" = 'family'::text) THEN "*Accepted_name"
    ELSE NULL::text
END)))),
    CONSTRAINT "Accepted_species[_binomial]__@TNRS__@vegpath.org" CHECK ((NOT ("Accepted_species[_binomial]__@TNRS__@vegpath.org" IS DISTINCT FROM rtrim("*Accepted_name_species", ' '::text)))),
    CONSTRAINT "[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" CHECK ((NOT ("[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" IS DISTINCT FROM "__accepted_infraspecific_{rank,epithet}"[1]))),
    CONSTRAINT "[accepted_]genus__@DwC__@vegpath.org" CHECK ((NOT ("[accepted_]genus__@DwC__@vegpath.org" IS DISTINCT FROM "__accepted_{genus,specific_epithet,infra_{rank,epithet}}"[1]))),
    CONSTRAINT "[accepted_]infraspecificEpithet__@DwC__@vegpath.org" CHECK ((NOT ("[accepted_]infraspecificEpithet__@DwC__@vegpath.org" IS DISTINCT FROM "__accepted_infraspecific_{rank,epithet}"[2]))),
    CONSTRAINT "[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" CHECK ((NOT ("[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" IS DISTINCT FROM
CASE
    WHEN ("*Accepted_name_rank" = 'family'::text) THEN concat_ws(' '::text, "Accepted_family__@TNRS__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
    WHEN ("*Accepted_name_rank" = 'genus'::text) THEN concat_ws(' '::text, "[accepted_]genus__@DwC__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
    ELSE "Accepted_species[_binomial]__@TNRS__@vegpath.org"
END))),
    CONSTRAINT "[accepted_]scientificName[_with_author]__@DwC__@vegpath.org" CHECK ((NOT ("[accepted_]scientificName[_with_author]__@DwC__@vegpath.org" IS DISTINCT FROM ("*Accepted_name" || COALESCE((' '::text || "*Accepted_name_author"), ''::text))))),
    CONSTRAINT "[accepted_]specificEpithet__@DwC__@vegpath.org" CHECK ((NOT ("[accepted_]specificEpithet__@DwC__@vegpath.org" IS DISTINCT FROM "__accepted_{genus,specific_epithet,infra_{rank,epithet}}"[2]))),
    CONSTRAINT "[matched_]scientificName[_with_author]__@DwC__@vegpath.org" CHECK ((NOT ("[matched_]scientificName[_with_author]__@DwC__@vegpath.org" IS DISTINCT FROM ("matched~Name[_no_author]___@TNRS__@vegpath.org" || COALESCE((' '::text || "*Name_matched_author"), ''::text))))),
    CONSTRAINT "[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org" CHECK ((NOT ("[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org" IS DISTINCT FROM (("*Genus_matched" || ' '::text) || "*Specific_epithet_matched")))),
    CONSTRAINT "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org" CHECK ((NOT ("[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org" IS DISTINCT FROM "*Unmatched_terms"))),
    CONSTRAINT "[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" CHECK ((NOT ("[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" IS DISTINCT FROM
CASE
    WHEN matched_has_accepted THEN "[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org"
    ELSE "*Infraspecific_rank"
END))),
    CONSTRAINT "[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org" CHECK ((NOT ("[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org" IS DISTINCT FROM
CASE
    WHEN matched_has_accepted THEN "*Accepted_name_author"
    ELSE "*Name_matched_author"
END))),
    CONSTRAINT "[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org" CHECK ((NOT ("[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org" IS DISTINCT FROM
CASE
    WHEN matched_has_accepted THEN "Accepted_family__@TNRS__@vegpath.org"
    ELSE "*Name_matched_accepted_family"
END))),
    CONSTRAINT "[scrubbed_]genus__@DwC__@vegpath.org" CHECK ((NOT ("[scrubbed_]genus__@DwC__@vegpath.org" IS DISTINCT FROM
CASE
    WHEN matched_has_accepted THEN "[accepted_]genus__@DwC__@vegpath.org"
    ELSE "*Genus_matched"
END))),
    CONSTRAINT "[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org" CHECK ((NOT ("[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org" IS DISTINCT FROM
CASE
    WHEN matched_has_accepted THEN "[accepted_]specificEpithet__@DwC__@vegpath.org"
    ELSE "*Infraspecific_epithet_matched"
END))),
    CONSTRAINT "[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" CHECK ((NOT ("[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" IS DISTINCT FROM
CASE
    WHEN ("[scrubbed_]taxonRank__@DwC__@vegpath.org" = 'family'::text) THEN concat_ws(' '::text, "[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
    WHEN ("[scrubbed_]taxonRank__@DwC__@vegpath.org" = 'genus'::text) THEN concat_ws(' '::text, "[scrubbed_]genus__@DwC__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
    ELSE "[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org"
END))),
    CONSTRAINT "[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org" CHECK ((NOT ("[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org" IS DISTINCT FROM
CASE
    WHEN matched_has_accepted THEN "*Accepted_name"
    ELSE "matched~Name[_no_author]___@TNRS__@vegpath.org"
END))),
    CONSTRAINT "[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org" CHECK ((NOT ("[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org" IS DISTINCT FROM
CASE
    WHEN matched_has_accepted THEN "[accepted_]scientificName[_with_author]__@DwC__@vegpath.org"
    ELSE "[matched_]scientificName[_with_author]__@DwC__@vegpath.org"
END))),
    CONSTRAINT "[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org" CHECK ((NOT ("[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org" IS DISTINCT FROM
CASE
    WHEN matched_has_accepted THEN "Accepted_species[_binomial]__@TNRS__@vegpath.org"
    ELSE "[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org"
END))),
    CONSTRAINT "[scrubbed_]specificEpithet__@DwC__@vegpath.org" CHECK ((NOT ("[scrubbed_]specificEpithet__@DwC__@vegpath.org" IS DISTINCT FROM
CASE
    WHEN matched_has_accepted THEN "[accepted_]specificEpithet__@DwC__@vegpath.org"
    ELSE "*Specific_epithet_matched"
END))),
    CONSTRAINT "[scrubbed_]taxonRank__@DwC__@vegpath.org" CHECK ((NOT ("[scrubbed_]taxonRank__@DwC__@vegpath.org" IS DISTINCT FROM
CASE
    WHEN matched_has_accepted THEN "*Accepted_name_rank"
    ELSE "*Name_matched_rank"
END))),
    CONSTRAINT "[scrubbed_]taxonomicStatus__@DwC__@vegpath.org" CHECK ((NOT ("[scrubbed_]taxonomicStatus__@DwC__@vegpath.org" IS DISTINCT FROM map_taxonomic_status("*Taxonomic_status", "*Accepted_name")))),
    CONSTRAINT "__accepted_infraspecific_{rank,epithet}" CHECK ((NOT ("__accepted_infraspecific_{rank,epithet}" IS DISTINCT FROM NULLIF("__accepted_{genus,specific_epithet,infra_{rank,epithet}}"[3:4], '{}'::text[])))),
    CONSTRAINT "__accepted_{genus,specific_epithet,infra_{rank,epithet}}" CHECK ((NOT ("__accepted_{genus,specific_epithet,infra_{rank,epithet}}" IS DISTINCT FROM regexp_split_to_array("*Accepted_name", ' '::text)))),
    CONSTRAINT matched_has_accepted CHECK ((NOT (matched_has_accepted IS DISTINCT FROM ("*Accepted_name" IS NOT NULL)))),
    CONSTRAINT "matched~Name[_no_author]___@TNRS__@vegpath.org" CHECK ((NOT ("matched~Name[_no_author]___@TNRS__@vegpath.org" IS DISTINCT FROM NULLIF("*Name_matched", 'No suitable matches found.'::text))))
);


--
-- Name: TABLE taxon_match; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON TABLE taxon_match IS '
whenever columns are renamed:
SELECT util.derived_cols_update(''"TNRS".taxon_match'');

to port derived column changes to vegbiendev:
SELECT util.derived_cols_export(''"TNRS".taxon_match'');
# run the returned SQL on vegbiendev
	-- runtime: 6 h, 2.6 ms/row ("22030570 ms"; "rows=8353235")
SELECT util.recreate_view(''"TNRS".taxon_best_match'');

to add a new derived column:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''col''), $$
expr
$$));
SELECT util.derived_cols_populate(''"TNRS".taxon_match'');
SELECT util.recreate_view(''"TNRS".taxon_best_match'');
$ make schemas/remake

to remove a derived column:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''col''));
$ make schemas/remake

to remove a non-derived column:
SELECT util.drop_column((''"TNRS".taxon_match'', ''col''));
$ make schemas/remake

to move a derived column to the middle or to add a non-derived column:
make the changes in inputs/.TNRS/schema.sql
$ inputs/.TNRS/data.sql.run refresh # re-run TNRS; runtime: 1 min ("1m2.629s")
SELECT util.derived_cols_update(''"TNRS".taxon_match'');
SELECT util.derived_cols_repopulate(''"TNRS".taxon_match'');
SELECT util.recreate_view(''"TNRS".taxon_best_match'');
$ make schemas/remake

to add a constraint: runtime: 3 min ("173620 ms")
';


--
-- Name: COLUMN taxon_match."[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org" IS '
= "*Unmatched_terms"

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org'')::util.col, $$"*Unmatched_terms"$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org" IS '
= ("*Genus_matched" || '' ''::text) || "*Specific_epithet_matched"

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org'')::util.col, $$("*Genus_matched" || '' ''::text) || "*Specific_epithet_matched"$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."matched~Name[_no_author]___@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."matched~Name[_no_author]___@TNRS__@vegpath.org" IS '
= NULLIF("*Name_matched", ''No suitable matches found.''::text)

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''matched~Name[_no_author]___@TNRS__@vegpath.org'')::util.col, $$NULLIF("*Name_matched", ''No suitable matches found.''::text)$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''matched~Name[_no_author]___@TNRS__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[matched_]scientificName[_with_author]__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[matched_]scientificName[_with_author]__@DwC__@vegpath.org" IS '
= "matched~Name[_no_author]___@TNRS__@vegpath.org" || COALESCE(('' ''::text || "*Name_matched_author"), ''''::text)

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[matched_]scientificName[_with_author]__@DwC__@vegpath.org'')::util.col, $$"matched~Name[_no_author]___@TNRS__@vegpath.org" || COALESCE(('' ''::text || "*Name_matched_author"), ''''::text)$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[matched_]scientificName[_with_author]__@DwC__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match.matched_has_accepted; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match.matched_has_accepted IS '
= "*Accepted_name" IS NOT NULL

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''matched_has_accepted'')::util.col, $$"*Accepted_name" IS NOT NULL$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''matched_has_accepted'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."Accepted_family__@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."Accepted_family__@TNRS__@vegpath.org" IS '
= COALESCE("*Accepted_name_family",
CASE
    WHEN ("*Accepted_name_rank" = ''family''::text) THEN "*Accepted_name"
    ELSE NULL::text
END)

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''Accepted_family__@TNRS__@vegpath.org'')::util.col, $$COALESCE("*Accepted_name_family",
CASE
    WHEN ("*Accepted_name_rank" = ''family''::text) THEN "*Accepted_name"
    ELSE NULL::text
END)$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''Accepted_family__@TNRS__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."Accepted_species[_binomial]__@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."Accepted_species[_binomial]__@TNRS__@vegpath.org" IS '
= rtrim("*Accepted_name_species", '' ''::text)

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''Accepted_species[_binomial]__@TNRS__@vegpath.org'')::util.col, $$rtrim("*Accepted_name_species", '' ''::text)$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''Accepted_species[_binomial]__@TNRS__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."__accepted_{genus,specific_epithet,infra_{rank,epithet}}"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."__accepted_{genus,specific_epithet,infra_{rank,epithet}}" IS '
= regexp_split_to_array("*Accepted_name", '' ''::text)

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''__accepted_{genus,specific_epithet,infra_{rank,epithet}}'')::util.col, $$regexp_split_to_array("*Accepted_name", '' ''::text)$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''__accepted_{genus,specific_epithet,infra_{rank,epithet}}'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[accepted_]genus__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[accepted_]genus__@DwC__@vegpath.org" IS '
= "__accepted_{genus,specific_epithet,infra_{rank,epithet}}"[1]

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[accepted_]genus__@DwC__@vegpath.org'')::util.col, $$"__accepted_{genus,specific_epithet,infra_{rank,epithet}}"[1]$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[accepted_]genus__@DwC__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[accepted_]specificEpithet__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[accepted_]specificEpithet__@DwC__@vegpath.org" IS '
= "__accepted_{genus,specific_epithet,infra_{rank,epithet}}"[2]

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[accepted_]specificEpithet__@DwC__@vegpath.org'')::util.col, $$"__accepted_{genus,specific_epithet,infra_{rank,epithet}}"[2]$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[accepted_]specificEpithet__@DwC__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" IS '
= CASE
    WHEN ("*Accepted_name_rank" = ''family''::text) THEN concat_ws('' ''::text, "Accepted_family__@TNRS__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
    WHEN ("*Accepted_name_rank" = ''genus''::text) THEN concat_ws('' ''::text, "[accepted_]genus__@DwC__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
    ELSE "Accepted_species[_binomial]__@TNRS__@vegpath.org"
END

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org'')::util.col, $$CASE
    WHEN ("*Accepted_name_rank" = ''family''::text) THEN concat_ws('' ''::text, "Accepted_family__@TNRS__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
    WHEN ("*Accepted_name_rank" = ''genus''::text) THEN concat_ws('' ''::text, "[accepted_]genus__@DwC__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
    ELSE "Accepted_species[_binomial]__@TNRS__@vegpath.org"
END$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."__accepted_infraspecific_{rank,epithet}"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."__accepted_infraspecific_{rank,epithet}" IS '
= NULLIF("__accepted_{genus,specific_epithet,infra_{rank,epithet}}"[3:4], ''{}''::text[])

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''__accepted_infraspecific_{rank,epithet}'')::util.col, $$NULLIF("__accepted_{genus,specific_epithet,infra_{rank,epithet}}"[3:4], ''{}''::text[])$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''__accepted_infraspecific_{rank,epithet}'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" IS '
= "__accepted_infraspecific_{rank,epithet}"[1]

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org'')::util.col, $$"__accepted_infraspecific_{rank,epithet}"[1]$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[accepted_]infraspecificEpithet__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[accepted_]infraspecificEpithet__@DwC__@vegpath.org" IS '
= "__accepted_infraspecific_{rank,epithet}"[2]

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[accepted_]infraspecificEpithet__@DwC__@vegpath.org'')::util.col, $$"__accepted_infraspecific_{rank,epithet}"[2]$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[accepted_]infraspecificEpithet__@DwC__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org" IS '
= "*Accepted_name" || COALESCE(('' ''::text || "*Accepted_name_author"), ''''::text)

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[accepted_]scientificName[_with_author]__@DwC__@vegpath.org'')::util.col, $$"*Accepted_name" || COALESCE(('' ''::text || "*Accepted_name_author"), ''''::text)$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[accepted_]scientificName[_with_author]__@DwC__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[scrubbed_]taxonomicStatus__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[scrubbed_]taxonomicStatus__@DwC__@vegpath.org" IS '
= "TNRS".map_taxonomic_status("*Taxonomic_status", "*Accepted_name")

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]taxonomicStatus__@DwC__@vegpath.org'')::util.col, $$"TNRS".map_taxonomic_status("*Taxonomic_status", "*Accepted_name")$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[scrubbed_]taxonomicStatus__@DwC__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[scrubbed_]taxonRank__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[scrubbed_]taxonRank__@DwC__@vegpath.org" IS '
= CASE
    WHEN matched_has_accepted THEN "*Accepted_name_rank"
    ELSE "*Name_matched_rank"
END

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]taxonRank__@DwC__@vegpath.org'')::util.col, $$CASE
    WHEN matched_has_accepted THEN "*Accepted_name_rank"
    ELSE "*Name_matched_rank"
END$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[scrubbed_]taxonRank__@DwC__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org" IS '
= CASE
    WHEN matched_has_accepted THEN "Accepted_family__@TNRS__@vegpath.org"
    ELSE "*Name_matched_accepted_family"
END

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org'')::util.col, $$CASE
    WHEN matched_has_accepted THEN "Accepted_family__@TNRS__@vegpath.org"
    ELSE "*Name_matched_accepted_family"
END$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[scrubbed_]genus__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[scrubbed_]genus__@DwC__@vegpath.org" IS '
= CASE
    WHEN matched_has_accepted THEN "[accepted_]genus__@DwC__@vegpath.org"
    ELSE "*Genus_matched"
END

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]genus__@DwC__@vegpath.org'')::util.col, $$CASE
    WHEN matched_has_accepted THEN "[accepted_]genus__@DwC__@vegpath.org"
    ELSE "*Genus_matched"
END$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[scrubbed_]genus__@DwC__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[scrubbed_]specificEpithet__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[scrubbed_]specificEpithet__@DwC__@vegpath.org" IS '
= CASE
    WHEN matched_has_accepted THEN "[accepted_]specificEpithet__@DwC__@vegpath.org"
    ELSE "*Specific_epithet_matched"
END

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]specificEpithet__@DwC__@vegpath.org'')::util.col, $$CASE
    WHEN matched_has_accepted THEN "[accepted_]specificEpithet__@DwC__@vegpath.org"
    ELSE "*Specific_epithet_matched"
END$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[scrubbed_]specificEpithet__@DwC__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org" IS '
= CASE
    WHEN matched_has_accepted THEN "Accepted_species[_binomial]__@TNRS__@vegpath.org"
    ELSE "[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org"
END

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org'')::util.col, $$CASE
    WHEN matched_has_accepted THEN "Accepted_species[_binomial]__@TNRS__@vegpath.org"
    ELSE "[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org"
END$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" IS '
= CASE
    WHEN ("[scrubbed_]taxonRank__@DwC__@vegpath.org" = ''family''::text) THEN concat_ws('' ''::text, "[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
    WHEN ("[scrubbed_]taxonRank__@DwC__@vegpath.org" = ''genus''::text) THEN concat_ws('' ''::text, "[scrubbed_]genus__@DwC__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
    ELSE "[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org"
END

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org'')::util.col, $$CASE
    WHEN ("[scrubbed_]taxonRank__@DwC__@vegpath.org" = ''family''::text) THEN concat_ws('' ''::text, "[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
    WHEN ("[scrubbed_]taxonRank__@DwC__@vegpath.org" = ''genus''::text) THEN concat_ws('' ''::text, "[scrubbed_]genus__@DwC__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
    ELSE "[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org"
END$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" IS '
= CASE
    WHEN matched_has_accepted THEN "[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org"
    ELSE "*Infraspecific_rank"
END

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org'')::util.col, $$CASE
    WHEN matched_has_accepted THEN "[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org"
    ELSE "*Infraspecific_rank"
END$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org" IS '
= CASE
    WHEN matched_has_accepted THEN "[accepted_]specificEpithet__@DwC__@vegpath.org"
    ELSE "*Infraspecific_epithet_matched"
END

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org'')::util.col, $$CASE
    WHEN matched_has_accepted THEN "[accepted_]specificEpithet__@DwC__@vegpath.org"
    ELSE "*Infraspecific_epithet_matched"
END$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org" IS '
= CASE
    WHEN matched_has_accepted THEN "*Accepted_name"
    ELSE "matched~Name[_no_author]___@TNRS__@vegpath.org"
END

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org'')::util.col, $$CASE
    WHEN matched_has_accepted THEN "*Accepted_name"
    ELSE "matched~Name[_no_author]___@TNRS__@vegpath.org"
END$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org" IS '
= CASE
    WHEN matched_has_accepted THEN "*Accepted_name_author"
    ELSE "*Name_matched_author"
END

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org'')::util.col, $$CASE
    WHEN matched_has_accepted THEN "*Accepted_name_author"
    ELSE "*Name_matched_author"
END$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: COLUMN taxon_match."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON COLUMN taxon_match."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org" IS '
= CASE
    WHEN matched_has_accepted THEN "[accepted_]scientificName[_with_author]__@DwC__@vegpath.org"
    ELSE "[matched_]scientificName[_with_author]__@DwC__@vegpath.org"
END

derived column

to modify expr:
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org'')::util.col, $$CASE
    WHEN matched_has_accepted THEN "[accepted_]scientificName[_with_author]__@DwC__@vegpath.org"
    ELSE "[matched_]scientificName[_with_author]__@DwC__@vegpath.org"
END$$)::util.derived_col_def);
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);

to rename:
# rename column
# rename CHECK constraint
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);

to drop:
SELECT util.drop_derived_col((''"TNRS".taxon_match'', ''[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org'')::util.col);
	-- DROP __ CASCADE doesn''t work when there are dependent views
';


--
-- Name: taxon_best_match; Type: VIEW; Schema: TNRS; Owner: -
--

CREATE VIEW taxon_best_match AS
 SELECT taxon_match.batch,
    taxon_match.match_num,
    taxon_match."*Name_number",
    taxon_match."*Name_submitted",
    taxon_match."*Overall_score",
    taxon_match."*Name_matched",
    taxon_match."*Name_matched_rank",
    taxon_match."*Name_score",
    taxon_match."*Name_matched_author",
    taxon_match."*Name_matched_url",
    taxon_match."*Author_matched",
    taxon_match."*Author_score",
    taxon_match."*Family_matched",
    taxon_match."*Family_score",
    taxon_match."*Name_matched_accepted_family",
    taxon_match."*Genus_matched",
    taxon_match."*Genus_score",
    taxon_match."*Specific_epithet_matched",
    taxon_match."*Specific_epithet_score",
    taxon_match."*Infraspecific_rank",
    taxon_match."*Infraspecific_epithet_matched",
    taxon_match."*Infraspecific_epithet_score",
    taxon_match."*Infraspecific_rank_2",
    taxon_match."*Infraspecific_epithet_2_matched",
    taxon_match."*Infraspecific_epithet_2_score",
    taxon_match."*Annotations",
    taxon_match."*Unmatched_terms",
    taxon_match."*Taxonomic_status",
    taxon_match."*Accepted_name",
    taxon_match."*Accepted_name_author",
    taxon_match."*Accepted_name_rank",
    taxon_match."*Accepted_name_url",
    taxon_match."*Accepted_name_species",
    taxon_match."*Accepted_name_family",
    taxon_match."*Selected",
    taxon_match."*Source",
    taxon_match."*Warnings",
    taxon_match."*Accepted_name_lsid",
    taxon_match.is_valid_match,
    taxon_match.scrubbed_unique_taxon_name,
    taxon_match."[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org",
    taxon_match."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org",
    taxon_match."matched~Name[_no_author]___@TNRS__@vegpath.org",
    taxon_match."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
    taxon_match.matched_has_accepted,
    taxon_match."Accepted_family__@TNRS__@vegpath.org",
    taxon_match."Accepted_species[_binomial]__@TNRS__@vegpath.org",
    taxon_match."__accepted_{genus,specific_epithet,infra_{rank,epithet}}",
    taxon_match."[accepted_]genus__@DwC__@vegpath.org",
    taxon_match."[accepted_]specificEpithet__@DwC__@vegpath.org",
    taxon_match."[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org",
    taxon_match."__accepted_infraspecific_{rank,epithet}",
    taxon_match."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
    taxon_match."[accepted_]infraspecificEpithet__@DwC__@vegpath.org",
    taxon_match."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org",
    taxon_match."[scrubbed_]taxonomicStatus__@DwC__@vegpath.org",
    taxon_match."[scrubbed_]taxonRank__@DwC__@vegpath.org",
    taxon_match."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org",
    taxon_match."[scrubbed_]genus__@DwC__@vegpath.org",
    taxon_match."[scrubbed_]specificEpithet__@DwC__@vegpath.org",
    taxon_match."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org",
    taxon_match."[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org",
    taxon_match."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
    taxon_match."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org",
    taxon_match."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org",
    taxon_match."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org",
    taxon_match."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org"
   FROM taxon_match
  WHERE (taxon_match."*Selected" = 'true'::text);


--
-- Name: VIEW taxon_best_match; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON VIEW taxon_best_match IS '
to modify:
SELECT util.recreate_view(''"TNRS"."taxon_best_match"'', $$
SELECT __
$$);
';


--
-- Name: taxon_match_input; Type: VIEW; Schema: TNRS; Owner: -
--

CREATE VIEW taxon_match_input AS
 SELECT taxon_match."*Name_number" AS "Name_number",
    taxon_match."*Name_submitted" AS "Name_submitted",
    taxon_match."*Overall_score" AS "Overall_score",
    taxon_match."*Name_matched" AS "Name_matched",
    taxon_match."*Name_matched_rank" AS "Name_matched_rank",
    taxon_match."*Name_score" AS "Name_score",
    taxon_match."*Name_matched_author" AS "Name_matched_author",
    taxon_match."*Name_matched_url" AS "Name_matched_url",
    taxon_match."*Author_matched" AS "Author_matched",
    taxon_match."*Author_score" AS "Author_score",
    taxon_match."*Family_matched" AS "Family_matched",
    taxon_match."*Family_score" AS "Family_score",
    taxon_match."*Name_matched_accepted_family" AS "Name_matched_accepted_family",
    taxon_match."*Genus_matched" AS "Genus_matched",
    taxon_match."*Genus_score" AS "Genus_score",
    taxon_match."*Specific_epithet_matched" AS "Specific_epithet_matched",
    taxon_match."*Specific_epithet_score" AS "Specific_epithet_score",
    taxon_match."*Infraspecific_rank" AS "Infraspecific_rank",
    taxon_match."*Infraspecific_epithet_matched" AS "Infraspecific_epithet_matched",
    taxon_match."*Infraspecific_epithet_score" AS "Infraspecific_epithet_score",
    taxon_match."*Infraspecific_rank_2" AS "Infraspecific_rank_2",
    taxon_match."*Infraspecific_epithet_2_matched" AS "Infraspecific_epithet_2_matched",
    taxon_match."*Infraspecific_epithet_2_score" AS "Infraspecific_epithet_2_score",
    taxon_match."*Annotations" AS "Annotations",
    taxon_match."*Unmatched_terms" AS "Unmatched_terms",
    taxon_match."*Taxonomic_status" AS "Taxonomic_status",
    taxon_match."*Accepted_name" AS "Accepted_name",
    taxon_match."*Accepted_name_author" AS "Accepted_name_author",
    taxon_match."*Accepted_name_rank" AS "Accepted_name_rank",
    taxon_match."*Accepted_name_url" AS "Accepted_name_url",
    taxon_match."*Accepted_name_species" AS "Accepted_name_species",
    taxon_match."*Accepted_name_family" AS "Accepted_name_family",
    taxon_match."*Selected" AS "Selected",
    taxon_match."*Source" AS "Source",
    taxon_match."*Warnings" AS "Warnings",
    taxon_match."*Accepted_name_lsid" AS "Accepted_name_lsid"
   FROM taxon_match;


--
-- Name: taxon_match_input__copy_to; Type: TABLE; Schema: TNRS; Owner: -; Tablespace: 
--

CREATE TABLE taxon_match_input__copy_to (
    "Name_number" integer,
    "Name_submitted" text,
    "Overall_score" double precision,
    "Name_matched" text,
    "Name_matched_rank" text,
    "Name_score" double precision,
    "Name_matched_author" text,
    "Name_matched_url" text,
    "Author_matched" text,
    "Author_score" double precision,
    "Family_matched" text,
    "Family_score" double precision,
    "Name_matched_accepted_family" text,
    "Genus_matched" text,
    "Genus_score" double precision,
    "Specific_epithet_matched" text,
    "Specific_epithet_score" double precision,
    "Infraspecific_rank" text,
    "Infraspecific_epithet_matched" text,
    "Infraspecific_epithet_score" double precision,
    "Infraspecific_rank_2" text,
    "Infraspecific_epithet_2_matched" text,
    "Infraspecific_epithet_2_score" double precision,
    "Annotations" text,
    "Unmatched_terms" text,
    "Taxonomic_status" text,
    "Accepted_name" text,
    "Accepted_name_author" text,
    "Accepted_name_rank" text,
    "Accepted_name_url" text,
    "Accepted_name_species" text,
    "Accepted_name_family" text,
    "Selected" text,
    "Source" text,
    "Warnings" text,
    "Accepted_name_lsid" text
);


--
-- Name: taxon_scrub; Type: VIEW; Schema: TNRS; Owner: -
--

CREATE VIEW taxon_scrub AS
 SELECT taxon_best_match.batch,
    taxon_best_match.match_num,
    taxon_best_match."*Name_number",
    taxon_best_match."*Name_submitted",
    taxon_best_match."*Overall_score",
    taxon_best_match."*Name_matched",
    taxon_best_match."*Name_matched_rank",
    taxon_best_match."*Name_score",
    taxon_best_match."*Name_matched_author",
    taxon_best_match."*Name_matched_url",
    taxon_best_match."*Author_matched",
    taxon_best_match."*Author_score",
    taxon_best_match."*Family_matched",
    taxon_best_match."*Family_score",
    taxon_best_match."*Name_matched_accepted_family",
    taxon_best_match."*Genus_matched",
    taxon_best_match."*Genus_score",
    taxon_best_match."*Specific_epithet_matched",
    taxon_best_match."*Specific_epithet_score",
    taxon_best_match."*Infraspecific_rank",
    taxon_best_match."*Infraspecific_epithet_matched",
    taxon_best_match."*Infraspecific_epithet_score",
    taxon_best_match."*Infraspecific_rank_2",
    taxon_best_match."*Infraspecific_epithet_2_matched",
    taxon_best_match."*Infraspecific_epithet_2_score",
    taxon_best_match."*Annotations",
    taxon_best_match."*Unmatched_terms",
    taxon_best_match."*Taxonomic_status",
    taxon_best_match."*Accepted_name",
    taxon_best_match."*Accepted_name_author",
    taxon_best_match."*Accepted_name_rank",
    taxon_best_match."*Accepted_name_url",
    taxon_best_match."*Accepted_name_species",
    taxon_best_match."*Accepted_name_family",
    taxon_best_match."*Selected",
    taxon_best_match."*Source",
    taxon_best_match."*Warnings",
    taxon_best_match."*Accepted_name_lsid",
    taxon_best_match.is_valid_match,
    taxon_best_match.scrubbed_unique_taxon_name,
    taxon_best_match."[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org",
    taxon_best_match."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org",
    taxon_best_match."matched~Name[_no_author]___@TNRS__@vegpath.org",
    taxon_best_match."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
    taxon_best_match.matched_has_accepted,
    taxon_best_match."Accepted_family__@TNRS__@vegpath.org",
    taxon_best_match."Accepted_species[_binomial]__@TNRS__@vegpath.org",
    taxon_best_match."__accepted_{genus,specific_epithet,infra_{rank,epithet}}",
    taxon_best_match."[accepted_]genus__@DwC__@vegpath.org",
    taxon_best_match."[accepted_]specificEpithet__@DwC__@vegpath.org",
    taxon_best_match."[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org",
    taxon_best_match."__accepted_infraspecific_{rank,epithet}",
    taxon_best_match."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
    taxon_best_match."[accepted_]infraspecificEpithet__@DwC__@vegpath.org",
    taxon_best_match."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org",
    taxon_best_match."[scrubbed_]taxonomicStatus__@DwC__@vegpath.org",
    taxon_best_match."[scrubbed_]taxonRank__@DwC__@vegpath.org",
    taxon_best_match."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org",
    taxon_best_match."[scrubbed_]genus__@DwC__@vegpath.org",
    taxon_best_match."[scrubbed_]specificEpithet__@DwC__@vegpath.org",
    taxon_best_match."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org",
    taxon_best_match."[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org",
    taxon_best_match."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
    taxon_best_match."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org",
    taxon_best_match."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org",
    taxon_best_match."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org",
    taxon_best_match."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org"
   FROM taxon_best_match
  WHERE taxon_best_match.is_valid_match;


--
-- Name: VIEW taxon_scrub; Type: COMMENT; Schema: TNRS; Owner: -
--

COMMENT ON VIEW taxon_scrub IS '
to modify:
SELECT util.recreate_view(''"TNRS".taxon_scrub'', $$
SELECT __
$$);

to merge synonymous columns:
# temporarily move correct col out of the way, to allow renaming synonym col:
ALTER TABLE "TNRS".taxon_scrub RENAME "correct_col" TO "_correct_col";
## also perform the rename in any dependent .* views (currently there are none)
# rename columns to replace:
ALTER TABLE "TNRS".taxon_scrub RENAME "synonym_col" TO "correct_col";
## also perform the rename in any dependent .* views (currently there are none)
# remove duplicate cols and now-unnecessary CASE wrappers
SELECT util.recreate_view(''"TNRS".taxon_scrub'', $$
SELECT __ -- with the CASE-wrapped synonym col removed
$$);
';


--
-- Name: batch_download_settings_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: 
--

ALTER TABLE ONLY batch_download_settings
    ADD CONSTRAINT batch_download_settings_pkey PRIMARY KEY (id);


--
-- Name: batch_id_by_time_key; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: 
--

ALTER TABLE ONLY batch
    ADD CONSTRAINT batch_id_by_time_key UNIQUE (id_by_time);


--
-- Name: batch_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: 
--

ALTER TABLE ONLY batch
    ADD CONSTRAINT batch_pkey PRIMARY KEY (id);


--
-- Name: client_version_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: 
--

ALTER TABLE ONLY client_version
    ADD CONSTRAINT client_version_pkey PRIMARY KEY (id);


--
-- Name: taxon_match_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: 
--

ALTER TABLE ONLY taxon_match
    ADD CONSTRAINT taxon_match_pkey PRIMARY KEY (batch, match_num);

ALTER TABLE taxon_match CLUSTER ON taxon_match_pkey;


--
-- Name: batch_client_version_idx; Type: INDEX; Schema: TNRS; Owner: -; Tablespace: 
--

CREATE INDEX batch_client_version_idx ON batch USING btree (client_version);


--
-- Name: taxon_best_match__valid_match; Type: INDEX; Schema: TNRS; Owner: -; Tablespace: 
--

CREATE INDEX taxon_best_match__valid_match ON taxon_match USING btree ("*Name_submitted") WHERE (("*Selected" = 'true'::text) AND is_valid_match);


--
-- Name: taxon_match_Name_submitted_idx; Type: INDEX; Schema: TNRS; Owner: -; Tablespace: 
--

CREATE INDEX "taxon_match_Name_submitted_idx" ON taxon_match USING btree ("*Name_submitted");


--
-- Name: taxon_match__one_selected_match; Type: INDEX; Schema: TNRS; Owner: -; Tablespace: 
--

CREATE UNIQUE INDEX taxon_match__one_selected_match ON taxon_match USING btree (batch, "*Name_number") WHERE ("*Selected" = 'true'::text);


--
-- Name: batch__fill; Type: TRIGGER; Schema: TNRS; Owner: -
--

CREATE TRIGGER batch__fill BEFORE INSERT OR UPDATE ON batch FOR EACH ROW EXECUTE PROCEDURE batch__fill();


--
-- Name: taxon_match__batch_begin; Type: TRIGGER; Schema: TNRS; Owner: -
--

CREATE TRIGGER taxon_match__batch_begin BEFORE INSERT ON taxon_match_input__copy_to FOR EACH STATEMENT EXECUTE PROCEDURE taxon_match__batch_begin();


--
-- Name: taxon_match__fill; Type: TRIGGER; Schema: TNRS; Owner: -
--

CREATE TRIGGER taxon_match__fill BEFORE INSERT OR UPDATE ON taxon_match FOR EACH ROW EXECUTE PROCEDURE taxon_match__fill();


--
-- Name: taxon_match__fill_derived; Type: TRIGGER; Schema: TNRS; Owner: -
--

CREATE TRIGGER taxon_match__fill_derived BEFORE INSERT OR UPDATE ON taxon_match FOR EACH ROW EXECUTE PROCEDURE taxon_match__fill_derived();


--
-- Name: taxon_match__match_num__fill; Type: TRIGGER; Schema: TNRS; Owner: -
--

CREATE TRIGGER taxon_match__match_num__fill BEFORE INSERT ON taxon_match FOR EACH ROW EXECUTE PROCEDURE taxon_match__match_num__fill();


--
-- Name: taxon_match_input__copy_to__insert; Type: TRIGGER; Schema: TNRS; Owner: -
--

CREATE TRIGGER taxon_match_input__copy_to__insert BEFORE INSERT ON taxon_match_input__copy_to FOR EACH ROW EXECUTE PROCEDURE taxon_match_input__copy_to__insert();


--
-- Name: batch_client_version_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: -
--

ALTER TABLE ONLY batch
    ADD CONSTRAINT batch_client_version_fkey FOREIGN KEY (client_version) REFERENCES client_version(id) ON UPDATE CASCADE ON DELETE CASCADE;


--
-- Name: batch_download_settings_id_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: -
--

ALTER TABLE ONLY batch_download_settings
    ADD CONSTRAINT batch_download_settings_id_fkey FOREIGN KEY (id) REFERENCES batch(id) ON UPDATE CASCADE ON DELETE CASCADE;


--
-- Name: taxon_match_batch_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: -
--

ALTER TABLE ONLY taxon_match
    ADD CONSTRAINT taxon_match_batch_fkey FOREIGN KEY (batch) REFERENCES batch(id) ON UPDATE CASCADE ON DELETE CASCADE;


--
-- Name: TNRS; Type: ACL; Schema: -; Owner: -
--

REVOKE ALL ON SCHEMA "TNRS" FROM PUBLIC;
REVOKE ALL ON SCHEMA "TNRS" FROM bien;
GRANT ALL ON SCHEMA "TNRS" TO bien;
GRANT USAGE ON SCHEMA "TNRS" TO bien_read;


--
-- Name: taxon_match; Type: ACL; Schema: TNRS; Owner: -
--

REVOKE ALL ON TABLE taxon_match FROM PUBLIC;
REVOKE ALL ON TABLE taxon_match FROM bien;
GRANT ALL ON TABLE taxon_match TO bien;
GRANT SELECT ON TABLE taxon_match TO bien_read;


--
-- Name: taxon_best_match; Type: ACL; Schema: TNRS; Owner: -
--

REVOKE ALL ON TABLE taxon_best_match FROM PUBLIC;
REVOKE ALL ON TABLE taxon_best_match FROM bien;
GRANT ALL ON TABLE taxon_best_match TO bien;
GRANT SELECT ON TABLE taxon_best_match TO bien_read;


--
-- Name: taxon_match_input; Type: ACL; Schema: TNRS; Owner: -
--

REVOKE ALL ON TABLE taxon_match_input FROM PUBLIC;
REVOKE ALL ON TABLE taxon_match_input FROM bien;
GRANT ALL ON TABLE taxon_match_input TO bien;
GRANT SELECT ON TABLE taxon_match_input TO bien_read;


--
-- Name: taxon_scrub; Type: ACL; Schema: TNRS; Owner: -
--

REVOKE ALL ON TABLE taxon_scrub FROM PUBLIC;
REVOKE ALL ON TABLE taxon_scrub FROM bien;
GRANT ALL ON TABLE taxon_scrub TO bien;
GRANT SELECT ON TABLE taxon_scrub TO bien_read;


--
-- PostgreSQL database dump complete
--