SELECT '# specimen replicates' AS ___;
SELECT count(*) AS count FROM "Specimen";

SELECT '# families' AS ___;
SELECT count(DISTINCT "Family") AS count FROM "Specimen";

SELECT '# genera' AS ___;
SELECT count(DISTINCT "Genus") AS count FROM "Specimen";

SELECT '# species' AS ___;
SELECT count(DISTINCT "Genus"||':'||"Species") AS count FROM "Specimen";

SELECT '# binomials' AS ___;
SELECT count(DISTINCT "ScientificName") AS count FROM "Specimen";

SELECT 'collection codes' AS ___;
SELECT DISTINCT "CollectionCode" AS collectioncode_dwc FROM "Specimen";

SELECT '# catalog numbers' AS ___;
SELECT count(DISTINCT "CatalogNumber") AS count FROM "Specimen";

SELECT 'duplicate catalog numbers' AS ___;
SELECT "CatalogNumber" AS catalognumber_dwc, count(*) AS count
FROM "Specimen"
GROUP BY "CatalogNumber"
HAVING count(*) > 1
;

SELECT '# counties' AS ___;
SELECT count(DISTINCT "Country"||':'||"StateProvince"||':'||"County") AS count FROM "Specimen";

/*
SELECT COUNT(*) as totalRecords, COUNT(DISTINCT "CatalogNumber") as uniqueCatalogNumbers
FROM "Specimen";

SELECT CatalogNumber, COUNT(*) AS records
FROM "Specimen"
GROUP BY CatalogNumber
HAVING records>1;

SELECT b.CatalogNumber, DateLastModified, ScientificName, Collector, FieldNumber, 
CollectedDate
FROM "Specimen" AS a JOIN (
SELECT CatalogNumber, COUNT(*) AS records
FROM "Specimen"
WHERE CatalogNumber IS NOT NULL
GROUP BY CatalogNumber
HAVING records>1
) AS b
ON a.CatalogNumber=b.CatalogNumber
ORDER BY b.CatalogNumber ASC, DateLastModified DESC;

SELECT DateLastModified, ScientificName, Collector, FieldNumber, 
CollectedDate
FROM "Specimen" 
WHERE CatalogNumber IS NULL
ORDER BY CatalogNumber ASC, DateLastModified DESC
LIMIT 12;

SELECT 
(
SELECT COUNT(*)
FROM "Specimen"
WHERE Latitude IS NOT NULL
) AS allLats,
(
SELECT COUNT(*)
FROM "Specimen"
WHERE Latitude REGEXP '^(-|\\+){0,1}([0-9]+\\.[0-9]*|[0-9]*\\.[0-9]+|[0-9]+)$'
) AS decimalLats,
(
SELECT COUNT(*)
FROM "Specimen"
WHERE Longitude IS NOT NULL
) AS allLongs,
(
SELECT COUNT(*)
FROM "Specimen"
WHERE Longitude REGEXP '^(-|\\+){0,1}([0-9]+\\.[0-9]*|[0-9]*\\.[0-9]+|[0-9]+)$'
) AS decimalLongs;

SELECT Latitude, Longitude 
FROM "Specimen"
WHERE  Latitude IS NOT NULL AND  Longitude IS NOT NULL
LIMIT 10;

SELECT 
(
SELECT COUNT(*)
FROM "Specimen"
WHERE Latitude>90 OR Latitude<-90
) AS badLats,
(
SELECT COUNT(*)
FROM "Specimen"
WHERE Longitude>180 OR Longitude<-180
) AS badLongs;

SELECT DayCollected, MonthCollected, YearCollected 
FROM "Specimen"
WHERE DayCollected IS NOT NULL OR MonthCollected IS NOT NULL OR YearCollected IS NOT NULL
LIMIT 10;

SELECT
(
SELECT COUNT(*)
FROM "Specimen"
WHERE NOT(DayCollected REGEXP '^-?[0-9]+$')
OR NOT(MonthCollected REGEXP '^-?[0-9]+$')
OR NOT(YearCollected REGEXP '^-?[0-9]+$')
) AS badDateCollected,
(
SELECT COUNT(*)
FROM "Specimen"
WHERE NOT(DayIdentified REGEXP '^-?[0-9]+$')
OR NOT(MonthIdentified REGEXP '^-?[0-9]+$')
OR NOT(YearIdentified REGEXP '^-?[0-9]+$')
) AS badDateIdentified;

SELECT Locality
FROM "Specimen"
WHERE Locality IS NOT NULL
LIMIT 10;

SELECT PlantFungusDescription
FROM "Specimen"
WHERE PlantFungusDescription IS NOT NULL
LIMIT 10;

SELECT Habitat, Vegetation
FROM "Specimen"
WHERE Habitat IS NOT NULL OR Vegetation IS NOT NULL
LIMIT 10;
*/