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1 1452 aaronmk
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/",VegBIEN:/specimenreplicate,Comments,Order
2
coordinateUncertaintyInMeters,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88
3
coordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89
4
boundingBox,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91
5
footprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91
6
county,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66
7
stateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,65
8
country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,63
9
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68
10
verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
11
habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
12 1471 aaronmk
minimumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units:[default=m,to=m,to=]/value/_rangeStart/value,elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value}",,71
13
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units:[default=m,to=m,to=]/value/_rangeStart/value,elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value}",,71
14
maximumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value,elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1}",,72
15
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value,elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1}",,72
16 1452 aaronmk
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
17
latitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
18
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
19
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
20
longitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
21
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
22 1471 aaronmk
maximumDepth,"/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,75
23
maximumDepthInMeters,"/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,75
24
minimumDepth,"/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,74
25
minimumDepthInMeters,"/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,74
26 1452 aaronmk
eventDate/_alt,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt",Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping,44
27
dayCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
28
monthCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
29
yearCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
30
eventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/2",,44
31
collectedDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/3",,44
32
dateIdentified/_alt,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120
33
dayIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120
34
monthIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120
35
yearIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120
36
dateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,120
37
identifiedDate,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,,120
38
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
39
scientificName,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134
40
scientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
41
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
42
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150
43
subspecies,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150
44
species,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149
45
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149
46
genus,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147
47
family,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146
48
order,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,145
49
class,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,144
50
phylum,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,143
51
kingdom,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142
52
collector,/*_id/taxonoccurrence/verbatimcollectorname,,23
53
recordedBy,/*_id/taxonoccurrence/verbatimcollectorname,,23
54
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
55
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
56
fieldNotes,/description/_merge/1,,
57
notes,/description/_merge/1,,
58
remarks,/description/_merge/2,,158
59
taxonRemarks,/description/_merge/2,,158
60
catalogNumber,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/catalognumber_dwc","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
61
globalUniqueIdentifier,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
62
occurrenceID,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
63
collectorNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
64
recordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
65
collectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9
66
fieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
67
institutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8
68
acceptedNameUsage,,,135
69
acceptedNameUsageID,,,128
70
associatedMedia,,,36
71
associatedOccurrences,,,38
72
associatedReferences,,,37
73
associatedSequences,,,39
74
associatedTaxa,,,40
75
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
76
bed,,,117
77
behavior,,,29
78
continent,,Brad: OMIT,59
79
continentOcean,,Brad: OMIT,59
80
countryCode,,,64
81
dataGeneralizations,,,17
82
datasetID,,,10
83
datasetName,,,13
84
dateLastModified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
85
day,,Brad: OMIT,50
86
dcterms:accessRights,,,5
87
dcterms:bibliographicCitation,,,6
88
dcterms:language,,,2
89
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
90
dcterms:references,,,7
91
dcterms:rights,,,3
92
dcterms:rightsHolder,,,4
93
dcterms:type,,,0
94
disposition,,,33
95
dynamicProperties,,,18
96
earliestAgeOrLowestStage,,,109
97
earliestEonOrLowestEonothem,,,101
98
earliestEpochOrLowestSeries,,,107
99
earliestEraOrLowestErathem,,,103
100
earliestPeriodOrLowestSystem,,,105
101
endDayOfYear,,,47
102
establishmentMeans,,,30
103
eventID,,,41
104
eventRemarks,,,55
105
eventTime,,Brad: OMIT,45
106
footprintSRS,,,92
107
footprintSpatialFit,,,93
108
formation,,,115
109
geodeticDatum,,,87
110
geologicalContextID,,,100
111
georeferenceProtocol,,,96
112
georeferenceRemarks,,,99
113
georeferenceSources,,,97
114
georeferenceVerificationStatus,,,98
115
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
116
georeferencedDate,,,95
117
group,,,114
118
higherClassification,,,141
119
higherGeography,,,58
120
higherGeographyID,,,57
121
highestBiostratigraphicZone,,,112
122
identificationID,,,118
123
identificationQualifier,,,124
124
identificationReferences,,,121
125
identificationRemarks,,,123
126
identificationVerificationStatus,,,122
127
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
128
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
129
informationWithheld,,,16
130
institutionCode,,,
131
island,,,62
132
islandGroup,,,61
133
julianDay,,Brad: OMIT,50
134
latestAgeOrHighestStage,,,110
135
latestEonOrHighestEonothem,,,102
136
latestEpochOrHighestSeries,,,108
137
latestEraOrHighestErathem,,,104
138
latestPeriodOrHighestSystem,,,106
139
lifeStage,,,27
140
lithostratigraphicTerms,,,113
141
locationAccordingTo,,,78
142
locationID,,,56
143
locationRemarks,,,79
144
lowestBiostratigraphicZone,,,111
145
maximumDistanceAboveSurfaceInMeters,,,77
146
measurementAccuracy,,,169
147
measurementDeterminedBy,,,172
148
measurementDeterminedDate,,,171
149
measurementID,,,166
150
measurementMethod,,,173
151
measurementRemarks,,,174
152
measurementType,,,167
153
measurementUnit,,,170
154
measurementValue,,,168
155
member,,,116
156
minimumDistanceAboveSurfaceInMeters,,,76
157
month,,,49
158
municipality,,,67
159
nameAccordingTo,,,138
160
nameAccordingToID,,,131
161
namePublishedIn,,,139
162
namePublishedInID,,,132
163
namePublishedInYear,,,140
164
nomenclaturalCode,,,155
165
nomenclaturalStatus,,,157
166
occurrenceRemarks,,,21
167
occurrenceStatus,,,31
168
originalNameUsage,,,137
169
originalNameUsageID,,,130
170
otherCatalogNumbers,,,34
171
ownerInstitutionCode,,,14
172
parentNameUsage,,,136
173
parentNameUsageID,,,129
174
pointRadiusSpatialFit,,,90
175
preparationType,,Brad: OMIT,32
176
preparations,,Brad: OMIT,32
177
previousCatalogNumber,,?; Brad: OMIT,35
178
previousIdentifications,,Brad: OMIT,35
179
relatedCatalogItem,,Brad: OMIT,161
180
relatedResourceID,,Brad: OMIT,161
181
relationshipAccordingTo,,,163
182
relationshipEstablishedDate,,,164
183
relationshipOfResource,,Brad: OMIT,162
184
relationshipRemarks,,,165
185
relationshipType,,Brad: OMIT,162
186
reproductiveCondition,,,28
187
resourceID,,,160
188
resourceRelationshipID,,,159
189
samplingEffort,,,43
190
samplingProtocol,,,42
191
scientificNameID,,,127
192
startDayOfYear,,,46
193
subgenus,,,148
194
taxonConceptID,,,133
195
taxonID,,,126
196
taxonRank,,,151
197
taxonomicStatus,,,156
198
timeOfDay,,Brad: OMIT,45
199
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
200
verbatimCoordinateSystem,,,83
201
verbatimCoordinates,,,80
202
verbatimDepth,,,73
203
verbatimElevation,,,70
204
verbatimEventDate,,,51
205
verbatimSRS,,,84
206
verbatimTaxonRank,,,152
207
vernacularName,,,154
208
waterBody,,,60
209
year,,,48