inputs/VegBank/run + inputs/VegBank/run | + main @lib/runscripts/util.run:56 -> 152 | | + all @lib/runscripts/util.run:152 -> lib/runscripts/install.run:23 | | | + install @lib/runscripts/install.run:26 -> lib/runscripts/import.run:29 | | | | + import @lib/runscripts/import.run:32 -> lib/runscripts/datasrc_dir.run:29 | | | | | + pg_schema_exists @lib/runscripts/datasrc_dir.run:33 -> lib/sh/db.sh:412 | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405 | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | + inputs/VegBank/Source/run import | | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131 | | | | | | | + load_data @lib/runscripts/table.run:134 -> 50 | | | | | | | | + /usr/bin/make --directory=inputs/VegBank/Source/.. schema | | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120 | | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank Source/map.csv | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107 | | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117 | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99 | | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421 | | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412 | | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405 | | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97 | | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank Source/test | | | | | + inputs/VegBank/project/run import | | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131 | | | | | | | + load_data @lib/runscripts/table.run:134 -> 50 | | | | | | | | + /usr/bin/make --directory=inputs/VegBank/project/.. schema | | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120 | | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank project/map.csv | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107 | | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117 | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99 | | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421 | | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412 | | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405 | | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97 | | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank project/test | | | | | + inputs/VegBank/plot/run import | | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131 | | | | | | | + load_data @lib/runscripts/table.run:134 -> 50 | | | | | | | | + /usr/bin/make --directory=inputs/VegBank/plot/.. schema | | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120 | | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank plot/map.csv | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank plot/postprocess.sql | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117 | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99 | | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421 | | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412 | | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405 | | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97 | | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank plot/test | | | | | + inputs/VegBank/plot_/run import | | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131 | | | | | | | + load_data @lib/runscripts/table.run:134 -> 50 | | | | | | | | + /usr/bin/make --directory=inputs/VegBank/plot_/.. schema | | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120 | | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank plot_/map.csv | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107 | | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117 | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99 | | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421 | | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412 | | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405 | | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97 | | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank plot_/test | | | | | + inputs/VegBank/observation_/run import | | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131 | | | | | | | + load_data @lib/runscripts/table.run:134 -> 50 | | | | | | | | + /usr/bin/make --directory=inputs/VegBank/observation_/.. schema | | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120 | | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank observation_/map.csv | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank observation_/postprocess.sql | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117 | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99 | | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421 | | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412 | | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405 | | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97 | | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank observation_/test | | | | | + inputs/VegBank/stratumtype/run import | | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131 | | | | | | | + load_data @lib/runscripts/table.run:134 -> 50 | | | | | | | | + /usr/bin/make --directory=inputs/VegBank/stratumtype/.. schema | | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120 | | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stratumtype/map.csv | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107 | | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117 | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99 | | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421 | | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412 | | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405 | | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97 | | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stratumtype/test | | | | | + inputs/VegBank/stratum/run import | | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131 | | | | | | | + load_data @lib/runscripts/table.run:134 -> 50 | | | | | | | | + /usr/bin/make --directory=inputs/VegBank/stratum/.. schema | | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120 | | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stratum/map.csv | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stratum/postprocess.sql | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117 | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99 | | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421 | | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412 | | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405 | | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97 | | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stratum/test | | | | | + inputs/VegBank/plantconcept_/run import | | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131 | | | | | | | + load_data @lib/runscripts/table.run:134 -> 50 | | | | | | | | + /usr/bin/make --directory=inputs/VegBank/plantconcept_/.. schema | | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120 | | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank plantconcept_/map.csv | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank plantconcept_/postprocess.sql | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117 | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99 | | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421 | | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412 | | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405 | | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97 | | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank plantconcept_/test | | | | | + inputs/VegBank/taxonobservation_/run import | | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131 | | | | | | | + load_data @lib/runscripts/table.run:134 -> 50 | | | | | | | | + /usr/bin/make --directory=inputs/VegBank/taxonobservation_/.. schema | | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120 | | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank taxonobservation_/map.csv | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank taxonobservation_/postprocess.sql | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117 | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99 | | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421 | | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412 | | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405 | | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97 | | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank taxonobservation_/test | | | | | + inputs/VegBank/stemcount_/run import | | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131 | | | | | | | + load_data @lib/runscripts/table.run:134 -> 50 | | | | | | | | + /usr/bin/make --directory=inputs/VegBank/stemcount_/.. schema | | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120 | | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stemcount_/map.csv | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stemcount_/postprocess.sql | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117 | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99 | | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421 | | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412 | | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405 | | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97 | | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stemcount_/test | | | | | + inputs/VegBank/stemlocation_/run import | | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131 | | | | | | | + load_data @lib/runscripts/table.run:134 -> 50 | | | | | | | | + /usr/bin/make --directory=inputs/VegBank/stemlocation_/.. schema | | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120 | | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stemlocation_/map.csv | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stemlocation_/postprocess.sql | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117 | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99 | | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421 | | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412 | | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405 | | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97 | | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stemlocation_/test | | | | | + inputs/VegBank/taxon_observation.**/run import | | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131 | | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120 | | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77 | | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank taxon_observation.**/postprocess.sql | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117 | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + builtin cd -P inputs/VegBank/taxon_observation.** | | | | | | | | | + rm -f header.csv | | | | | | | | + mappings__table_run @lib/runscripts/view.run:22 -> lib/sh/util.sh:419 | | | | | | | | | + public_schema_exists @lib/sh/util.sh:435 -> lib/sh/db.sh:421 | | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412 | | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405 | | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | | + builtin cd -P inputs/VegBank/taxon_observation.** | | | | | | | | | | + rm -f map.csv | | | | | | | | | + test_ @lib/sh/util.sh:439 -> lib/runscripts/table.run:97 | | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank taxon_observation.**/test | | | | | + inputs/VegBank/^taxon_observation.**.sample/run import | | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131 | | | | | | | + load_data @lib/runscripts/table.run:134 -> 50 | | | | | | | | + /usr/bin/make --directory=inputs/VegBank/^taxon_observation.**.sample/.. schema | | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120 | | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank ^taxon_observation.**.sample/map.csv | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107 | | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117 | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99 | | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421 | | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412 | | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405 | | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97 | | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank ^taxon_observation.**.sample/test | | | | | + inputs/VegBank/projectcontributor_/run import | | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131 | | | | | | | + load_data @lib/runscripts/table.run:134 -> 50 | | | | | | | | + /usr/bin/make --directory=inputs/VegBank/projectcontributor_/.. schema | | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120 | | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank projectcontributor_/map.csv | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank projectcontributor_/postprocess.sql | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117 | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99 | | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421 | | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412 | | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405 | | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97 | | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank projectcontributor_/test | | | | | + inputs/VegBank/observationcontributor_/run import | | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131 | | | | | | | + load_data @lib/runscripts/table.run:134 -> 50 | | | | | | | | + /usr/bin/make --directory=inputs/VegBank/observationcontributor_/.. schema | | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120 | | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank observationcontributor_/map.csv | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank observationcontributor_/postprocess.sql | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117 | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99 | | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421 | | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412 | | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405 | | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97 | | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank observationcontributor_/test | | | | | + inputs/VegBank/observation__community/run import | | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131 | | | | | | | + load_data @lib/runscripts/table.run:134 -> 50 | | | | | | | | + /usr/bin/make --directory=inputs/VegBank/observation__community/.. schema | | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120 | | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77 | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank observation__community/map.csv | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107 | | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117 | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99 | | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421 | | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412 | | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405 | | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien" | | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1 | | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97 | | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank observation__community/test | | | | + export_ @lib/runscripts/import.run:33 -> 24