Revision 1843
Added by Aaron Marcuse-Kubitza about 12 years ago
| Makefile | ||
|---|---|---|
| 3 | 3 |
# Paths |
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bin := ../bin |
| 5 | 5 |
inputCoreMaps := DwC1-DwC2.specimens.csv DwC2-VegBIEN.specimens.csv\ |
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VegX-VegBIEN.organisms.csv
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VegX-VegBIEN.stems.csv
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|
| 7 | 7 |
|
| 8 | 8 |
# Via formats |
| 9 | 9 |
coreMaps := $(wildcard *-VegBIEN.*.csv) |
| ... | ... | |
| 103 | 103 |
|
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rootAttrs := :[@xmlns:tcs="http://www.tdwg.org/schemas/tcs/1.01"] |
| 105 | 105 |
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VegX-VegBIEN.organisms.csv: VegX-VegBIEN.stems.csv |
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env \ |
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left_in_root='$(rootAttrs)/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID->/*s/individualOrganismObservation' \ |
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left_out_root='$(rootAttrs)/*s/individualOrganismObservation' \ |
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right_in_root='/stemobservation/*_id/plantobservation' \ |
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right_out_root='/plantobservation' \ |
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$(chRoot) |
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vegxMaps += VegX-VegBIEN.organisms.csv |
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| 106 | 115 |
VegX-VegBIEN.plots.csv: VegX-VegBIEN.organisms.csv |
| 107 | 116 |
env \ |
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left_in_root='$(rootAttrs)/*s/individualOrganismObservation/*ID->/*s/plotObservation' \ |
| 109 | 118 |
left_out_root='/*s/plotObservation' \ |
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right_in_root='/taxonoccurrence/*_id/locationevent' \ |
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right_in_root='/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent' \
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right_out_root='/locationevent' \ |
| 112 | 121 |
$(chRoot) |
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vegxMaps += VegX-VegBIEN.plots.csv |
| 114 | 123 |
|
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VegX-VegBIEN.stems.csv: VegX-VegBIEN.organisms.csv |
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env \ |
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left_in_root='$(rootAttrs)/*s/individualOrganismObservation->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]' \ |
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left_out_root='/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]' \ |
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right_in_root='/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/stemobservation' \ |
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right_out_root='/stemobservation' \ |
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$(chRoot) |
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vegxMaps += VegX-VegBIEN.stems.csv |
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|
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vegx_maps: _always $(vegxMaps) ; |
| 125 | 125 |
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all += $(vegxMaps) |
Also available in: Unified diff
mappings: Build VegX-VegBIEN.organisms.csv from VegX-VegBIEN.stems.csv instead of vice versa. This entails switching the roots around so stem points to organism instead of the other way around, which is a complex operation. Re-rooted VegX-VegBIEN.organisms.csv at /plantobservation instead of /taxonoccurrence to avoid traveling up the hierarchy to taxonoccurrence and back down again to plantobservation, etc. as would otherwise have been the case.