Revision 2529
Added by Aaron Marcuse-Kubitza about 12 years ago
| DwC2-VegBIEN.specimens.csv | ||
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| 1 | 1 |
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/",VegBIEN:/specimenreplicate,Comments,Order |
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coordinateUncertaintyInMeters,//locationdetermination/coordsaccuracy/_toDouble/value/_noCV/value/_alt/1,,88
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coordinatePrecision,//locationdetermination/coordsaccuracy/_toDouble/value/_noCV/value/_alt/2,,89
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coordinateUncertaintyInMeters,//locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88 |
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coordinatePrecision,//locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89 |
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| 4 | 4 |
footprintWKT,//locationdetermination/footprintgeometry_dwc,,91 |
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county,"//locationdetermination/namedplace_id/_simplifyPath/path/_forEach:[do=""namedplace[value=_val]/parent_id""]/namedplace[value=county]/placename",,66
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stateProvince,"//locationdetermination/namedplace_id/_simplifyPath/path/_forEach:[do=""namedplace[value=_val]/parent_id""]/namedplace[value=stateProvince]/placename",,65
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country,"//locationdetermination/namedplace_id/_simplifyPath/path/_forEach:[do=""namedplace[value=_val]/parent_id""]/namedplace[value=country]/placename",Brad: Required; reject record if this field NULL,63
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continent,"//locationdetermination/namedplace_id/_simplifyPath/path/_forEach:[do=""namedplace[value=_val]/parent_id""]/namedplace[value=continent]/placename",Brad: OMIT,59
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county,"//locationdetermination/namedplace_id/_simplifyPath/path/_forEach:[do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66
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stateProvince,"//locationdetermination/namedplace_id/_simplifyPath/path/_forEach:[do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,65
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country,"//locationdetermination/namedplace_id/_simplifyPath/path/_forEach:[do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,63
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continent,"//locationdetermination/namedplace_id/_simplifyPath/path/_forEach:[do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,59
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| 9 | 9 |
locality,//location/locationnarrative/_merge/1,,68 |
| 10 | 10 |
verbatimLocality,//location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69 |
| 11 | 11 |
habitat,"//location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
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minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_toDouble/value/_alt/2/_avg/min,elevationrange/_toDouble/value/_range/from}/_units/value/_rangeStart/value,elevationrange/_toDouble/value/_range/to/_units/value/_alt/2/_rangeEnd/value}/_replace[""\bca\.?""=]/value",,71
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maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_toDouble/value/_alt/2/_avg/max/_units/value,elevationrange/_toDouble/value/_range/to/_units/value/_alt/1}",,72
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decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_toDouble/value/_alt/1/_nullIf/value",,85
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verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_toDouble/value/_alt/1/_nullIf/value",,81
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decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_toDouble/value/_alt/1/_nullIf/value",,86
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verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_toDouble/value/_alt/1/_nullIf/value",,82
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minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units/value/_rangeStart/value,elevationrange/_range/to/_units/value/_alt/2/_rangeEnd/value}/_replace[""\bca\.?""=]/value",,71
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maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max/_units/value,elevationrange/_range/to/_units/value/_alt/1}",,72
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decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf/value",,85
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verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf/value",,81
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decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf/value",,86
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verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf/value",,82
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| 18 | 18 |
maximumDepthInMeters,//locationevent/waterdepth/_avg/max/_units/value,,75 |
| 19 | 19 |
minimumDepthInMeters,//locationevent/waterdepth/_avg/min/_units/value,,74 |
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eventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_toTimestamp/value/_*/date/_dateRangeStart,obsenddate/_toTimestamp/value/_*/date/_dateRangeEnd}/value",,44
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dateIdentified,//taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_toTimestamp/value/_*/date/_dateRangeStart/value,,120
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eventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value",,44
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dateIdentified,//taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value,,120 |
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| 22 | 22 |
identifiedBy,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
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scientificName,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[value=_val]/parent_id""]/plantname[value=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134
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scientificNameAuthorship,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[value=_val]/parent_id""]/plantname[value=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
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infraspecificEpithet,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[value=_val]/parent_id""]/plantname[value=subspecies]/plantname",,150
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specificEpithet,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[value=_val]/parent_id""]/plantname[value=species]/plantname",,149
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genus,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[value=_val]/parent_id""]/plantname[value=genus]/plantname",,147
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family,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[value=_val]/parent_id""]/plantname[value=family]/plantname",,146
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order,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[value=_val]/parent_id""]/plantname[value=order]/plantname",,145
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class,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[value=_val]/parent_id""]/plantname[value=class]/plantname",,144
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phylum,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[value=_val]/parent_id""]/plantname[value=subkingdom]/plantname",,143
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kingdom,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[value=_val]/parent_id""]/plantname[value=kingdom]/plantname",,142
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scientificName,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134
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scientificNameAuthorship,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
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infraspecificEpithet,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150
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specificEpithet,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149
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genus,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147
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family,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146
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order,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,145
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class,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,144
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phylum,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,143
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kingdom,"//taxonoccurrence/taxondetermination[role=identifier]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142
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| 33 | 33 |
recordedBy,//taxonoccurrence/verbatimcollectorname,,23 |
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establishmentMeans,"/*_id/taxonoccurrence/{growthform/_toGrowthform/value/_map,iscultivated/_toBool/value/_map,isnative/_toBool/value/_map}/value",,30
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establishmentMeans,"/*_id/taxonoccurrence/{growthform/_map,iscultivated/_map,isnative/_map}/value",,30
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| 35 | 35 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 36 | 36 |
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26 |
| 37 | 37 |
fieldNotes,/description/_merge/1,, |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv: Removed _to* relational functions because type casting for those types is now automatic