Revision 3199
Added by Aaron Marcuse-Kubitza almost 12 years ago
| VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
MT[DwC],VegBIEN:/specimenreplicate,Comments,Order |
| 2 |
continent,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,59 |
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| 3 |
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68 |
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| 4 |
genus,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147 |
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| 5 |
family,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146 |
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establishmentMeans,"/*_id/taxonoccurrence/{growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=],iscultivated/_map:[cultivated=t,wild=f,*=],isnative/_map:[native=t,exotic=f,*=]}/value",,30
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continent,"/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,59 |
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| 3 |
locality,/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68 |
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| 7 | 4 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 8 |
id,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
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genus,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147 |
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| 6 |
family,"/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146 |
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establishmentMeans,"/{growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=],iscultivated/_map:[cultivated=t,wild=f,*=],isnative/_map:[native=t,exotic=f,*=]}/value",,30
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| 9 | 8 |
collectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9 |
| 10 | 9 |
institutionCode,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/institution_id/party/organizationname,, |
| 10 |
id,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
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| 11 | 11 |
basisOfRecord,,** No non-empty join mapping for basisOfRecord ** |
| 12 | 12 |
countryCode,,** No non-empty join mapping for countryCode ** |
| 13 | 13 |
datasetName,,** No non-empty join mapping for datasetName ** |
Also available in: Unified diff
VegBIEN: Fixing import issue related to duplicate entries in tables with children, where when a new table entry duplicates an existing entry, the 1:1 tables of that table and those tables' children are not merged, causing them to become orphaned. It is described in detail at <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Import_issues#Merging-duplicates-with-children>, including the rationale for this solution. Note that this is not a bug in column-based import, it applies to row-based import as well. This commit fixes the issue for specimenreplicate->taxonoccurrence.