Revision 3332
Added by Aaron Marcuse-Kubitza over 12 years ago
| VegBIEN.organisms.csv | ||
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SALVIAS,VegBIEN:/plantobservation,Comments |
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PlotObsID,"/""""/{sourceaccessioncode,_if:[cond/_eq:[left/_ref[addr=""../../../../_ignore/voucherType""],right=direct]]/{then/specimenreplicate,else/aggregateoccurrence/*_id/taxonoccurrence/voucher/*_id/specimenreplicate}/:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode}","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later.; Quotes sort it with other _ifs"
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coll_number,"/_if:[cond/_eq:[left/_ref[addr=""../../../../_ignore/voucherType""],right=direct]]/{then/specimenreplicate,else/aggregateoccurrence/*_id/taxonoccurrence/voucher/*_id/specimenreplicate}/:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc/_alt/1",Brad: Incorrect. Map instead as for voucher_string
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SourceVoucher,"/_if:[cond/_eq:[left/_ref[addr=""../../../../_ignore/voucherType""],right=direct]]/{then/specimenreplicate,else/aggregateoccurrence/*_id/taxonoccurrence/voucher/*_id/specimenreplicate}/:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
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census_date,"/_if:[cond/_eq:[left/_ref[addr=""../../../../_ignore/voucherType""],right=direct]]/{then/specimenreplicate,else/aggregateoccurrence/*_id/taxonoccurrence/voucher/*_id/specimenreplicate}/:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectiondate/_*/date",
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PlotObsID,"/""""/{sourceaccessioncode,_if:[cond/_eq:[left/_ref[addr=""../../../../_ignore/voucherType""],right=direct]]/{then/specimenreplicate,else/aggregateoccurrence:[@merge=1]/*_id/taxonoccurrence/voucher/*_id/specimenreplicate}/:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode}","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later.; Quotes sort it with other _ifs"
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coll_number,"/_if:[cond/_eq:[left/_ref[addr=""../../../../_ignore/voucherType""],right=direct]]/{then/specimenreplicate,else/aggregateoccurrence:[@merge=1]/*_id/taxonoccurrence/voucher/*_id/specimenreplicate}/:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc/_alt/1",Brad: Incorrect. Map instead as for voucher_string
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SourceVoucher,"/_if:[cond/_eq:[left/_ref[addr=""../../../../_ignore/voucherType""],right=direct]]/{then/specimenreplicate,else/aggregateoccurrence:[@merge=1]/*_id/taxonoccurrence/voucher/*_id/specimenreplicate}/:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
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census_date,"/_if:[cond/_eq:[left/_ref[addr=""../../../../_ignore/voucherType""],right=direct]]/{then/specimenreplicate,else/aggregateoccurrence:[@merge=1]/*_id/taxonoccurrence/voucher/*_id/specimenreplicate}/:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectiondate/_*/date",
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PlotCode,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/{parent_id/locationevent/{authorlocationcode,*_id/location/sourceaccessioncode/_alt/2},*_id/location/sourceaccessioncode/_merge/1/_alt/2}","Brad: Same as plotCode, above"
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PlotID,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/{parent_id/locationevent:[*_id/location/datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/{sourceaccessioncode,*_id/location/sourceaccessioncode/_alt/1},*_id/location/sourceaccessioncode/_merge/1/_alt/1}","Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
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Line,"/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent:[*_id/location/datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/{authorlocationcode,*_id/location/sourceaccessioncode/_merge/2/_alt/2}",
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Also available in: Unified diff
mappings/VegX-VegBIEN.stems.csv: Marked aggregateoccurrence as mergeable, in preparation for switching to explicit merging only to avoid unwanted merges