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Revision 345

VegX-VegBank.organisms.csv: Made stemCount default to 1

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NYBG-VegBIEN.organisms.csv
14 14
YearCollected,/*_ID/plotevent/obsStartDate/_date/year,
15 15
MaximumDepth,/*_ID/plotevent/waterDepth/max,
16 16
MinimumDepth,/*_ID/plotevent/waterDepth/min,
17
:1,/collectiveobs/*/stemCount,
17
:1,/collectiveobs/*/stemCount/_alt/1,
18 18
Habitat,"/collectiveobs/stemCount/individual/definedValue[*_ID/userDefined[tableName=individual,userDefinedName=habitat]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
19 19
PlantFungusDescription,"/collectiveobs/stemCount/individual/definedValue[*_ID/userDefined[tableName=individual,userDefinedName=plantFungusDescription]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue","Brad: Incorrect mapping to VB, also possibly to VX;  this is the specimenDescription field, as used by this institution (NOT a standard DwC element). Very important! Bob, Nick, where would this go in VB and VX?"
20 20
Substrate,"/collectiveobs/stemCount/individual/definedValue[*_ID/userDefined[tableName=individual,userDefinedName=substrate]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue","Brad: Incorrect mapping to VB and VX; refers to geological substrate or soils where specimen collected. Often concatenated with habitat, or included with specimen description. Bob, Nick, is there an element for this in VB/VX, or shall we just use userDefined?"
......
37 37
ScientificNameAuthor,"/taxondetermination[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Species]/*_ID/plantConcept/*_ID/reference/referenceContributor/*_ID/referenceParty/{givenName,surname}","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author"
38 38
Phylum,"/taxondetermination[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Subkingdom]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName",
39 39
Subspecies,"/taxondetermination[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Subspecies]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName",
40
UniqueNYInternalRecordNumber,"/{taxondetermination[ROLE_ID/aux_Role/roleCode=collector]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=false,interpretationDate=epoch,*_ID/plantConcept:[*_ID/reference],*_ID/party]/museumAccessionNumber,*_ID/plotevent/*_ID/plot:[confidentialityStatus=0]/authorPlotCode/_alt/3}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key"
41 40
ScientificName,"/{taxondetermination[ROLE_ID/aux_Role/roleCode=identifier,!*_ID/plantConcept/plantStatus]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[*_ID/reference]/*_ID/*/plantName,taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/*_ID/plantConcept:[*_ID/reference]/*_ID/*/plantName/_alt/1}","Brad: Bob, Nick, please is this mapping OK?"
42 41
Species,"/{taxondetermination[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Species]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName,taxondetermination[ROLE_ID/aux_Role/roleCode=collector]/*_ID/plantConcept/*_ID/*/plantName/_alt/2}",
42
UniqueNYInternalRecordNumber,":[collectiveobs/*/stemCount/_alt/2=1]/{taxondetermination[ROLE_ID/aux_Role/roleCode=collector]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=false,interpretationDate=epoch,*_ID/plantConcept:[*_ID/reference],*_ID/party]/museumAccessionNumber,*_ID/plotevent/*_ID/plot:[confidentialityStatus=0]/authorPlotCode/_alt/3}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key"

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