Revision 3678
Added by Aaron Marcuse-Kubitza over 12 years ago
| VegX.organisms.full.csv | ||
|---|---|---|
| 14 | 14 |
Genus,"/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=gen])/tcs:Name", |
| 15 | 15 |
Species,"/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[tcs:Rank/@code=sp])/tcs:Name", |
| 16 | 16 |
Notes,/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text, |
| 17 |
coll_number,/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/voucher/_alt/1,Brad: Incorrect. Map instead as for voucher_string
|
|
| 18 |
SourceVoucher,/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/voucher/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
|
|
| 17 |
coll_number,/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher/_alt/1,Brad: Incorrect. Map instead as for voucher_string |
|
| 18 |
SourceVoucher,/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/voucher/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below." |
|
| 19 | 19 |
tag1,/*ID->/*s/individualOrganism/identificationLabel[@id=1],"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once." |
| 20 | 20 |
tag2,/*ID->/*s/individualOrganism/identificationLabel[@id=2],"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other." |
| 21 |
Line,/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotName, |
|
| 21 | 22 |
PlotCode,/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotName,"Brad: Same as plotCode, above" |
| 22 |
PlotID,/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above." |
|
| 23 |
Line,/*ID->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotName, |
|
| 23 |
PlotID,/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above." |
|
| 24 | 24 |
temp_dbh,/diameterBaseDistance[baseDistance/value=1.37]/diameter, |
| 25 | 25 |
height_m,/height,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob |
| 26 | 26 |
x_position,/relativePlotPosition/relativeX,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX." |
| ... | ... | |
| 33 | 33 |
Habit,"/simpleUserdefined[name=growthForm]/value/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
|
| 34 | 34 |
ht_first_branch_m,/simpleUserdefined[name=heightFirstBranch]/value,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob |
| 35 | 35 |
liana_infestation,/simpleUserdefined[name=lianaInfestation]/value,Brad: Should also be userDefined for VegBank. |
| 36 |
PlotObsID,/simpleUserdefined[name=sourceAccessionCode]/value,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
|
| 36 | 37 |
cover_percent,/volumeCanopy/*ID->/*s/attribute/ordinal/coverPercent, |
| 37 | 38 |
intercept_cm,/volumeCanopy/value,"Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance." |
| 38 |
PlotObsID,:[*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceAccessionCode]/value,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
|
| 39 | 39 |
GenAuth,, |
| 40 | 40 |
IsMorpho,, |
| 41 | 41 |
OrigAuth,, |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv, VegX-VegBIEN.stems.csv: Removed all manual mappings to datasource_id now that datasource_id is auto-populated, both on the VegBIEN output side and the DwC/VegX input side. This should greatly simplify many of the mappings!