Revision 3678
Added by Aaron Marcuse-Kubitza over 12 years ago
| VegX-VegBIEN.stems.csv | ||
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| 15 | 15 |
//geospatial/DecimalLatitude,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}",
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| 16 | 16 |
//geospatial/DecimalLongitude,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}",
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| 17 | 17 |
//plotObservation/simpleUserdefined[name=method]/*ID/method/name,//method/name, |
| 18 |
//project/personnel[role=metadataProvider]/organizationName,//party/organizationname/_alt/1, |
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| 19 |
//*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,//project/projectname, |
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| 18 |
//project/title,//project/projectname, |
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| 20 | 19 |
//*s/communityDetermination/*s/communityConcept/commonName,//*/commname, |
| 21 | 20 |
//*s/communityDetermination/*s/communityConcept/name,//commconcept/commdescription, |
| 22 | 21 |
//plotObservation/obsEndDate,//locationevent/obsenddate, |
| ... | ... | |
| 42 | 41 |
//plotObservation/temperature,//locationevent/temperature, |
| 43 | 42 |
//geospatial/maximumDepthInMeters,//locationevent/waterdepth/_avg/max/_units/value, |
| 44 | 43 |
//geospatial/minimumDepthInMeters,//locationevent/waterdepth/_avg/min/_units/value, |
| 45 |
//plot/plotName,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/{./authorlocationcode,*_id/location/sourceaccessioncode/_merge/2/_alt/2}","""{./"" sorts it before the location.datasource_id mapping with ""{.}"""
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| 46 |
//plot/plotName,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/{./parent_id/locationevent/{./authorlocationcode,*_id/location/sourceaccessioncode/_alt/2},*_id/location/sourceaccessioncode/_merge/1/_alt/2}","""{./"" sorts it before the location.datasource_id mapping with ""{.}"""
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| 47 |
//plot/plotUniqueIdentifier,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/{./parent_id/locationevent/{./sourceaccessioncode,*_id/location/sourceaccessioncode/_alt/1},*_id/location/sourceaccessioncode/_merge/1/_alt/1}","""{./"" sorts it before the location.datasource_id mapping with ""{.}"""
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| 48 |
//party/organizationName,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/{./parent_id/locationevent/{.}/*_id/location/datasource_id/party/organizationname/_alt/1},"""{./"" sorts it before the location.datasource_id mapping with ""{.}"""
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| 49 |
//plot/plotUniqueIdentifier,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/{./sourceaccessioncode,*_id/location/sourceaccessioncode/_merge/2/_alt/1}","""{./"" sorts it before the location.datasource_id mapping with ""{.}"""
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//party/organizationName,/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/{.}/*_id/location/datasource_id/party/organizationname/_alt/1,"""{.}"" sorts it with other location mappings with a datasource_id"
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| 44 |
//plot/plotName,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/{authorlocationcode,*_id/location/sourceaccessioncode/_merge/2/_alt/2}",
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| 45 |
//plot/plotName,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/{parent_id/locationevent/{authorlocationcode,*_id/location/sourceaccessioncode/_alt/2},*_id/location/sourceaccessioncode/_merge/1/_alt/2}",
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| 46 |
//plot/plotUniqueIdentifier,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/{parent_id/locationevent/{sourceaccessioncode,*_id/location/sourceaccessioncode/_alt/1},*_id/location/sourceaccessioncode/_merge/1/_alt/1}",
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| 47 |
//plot/plotUniqueIdentifier,"/*_id/plantobservation/aggregateoccurrence/*_id/taxonoccurrence/*_id/locationevent/{sourceaccessioncode,*_id/location/sourceaccessioncode/_merge/2/_alt/1}",
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| 51 | 48 |
//individualOrganismObservation/simpleUserdefined[name=growthForm]/value,//taxonoccurrence/growthform, |
| 52 | 49 |
//*s/taxonConcept[tcs:@code=TaxonomicRankBelowSubspeciesEnum]/tcs:Rank,"//taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname/_name/first", |
| 53 | 50 |
//*s/taxonConcept[tcs:@code=auth]/tcs:Name,"//taxonoccurrence/taxondetermination[role=computer]/*_id/plantconcept/plantname_id/_simplifyPath/path/_forEach:[do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname", |
| ... | ... | |
| 80 | 77 |
//individualOrganism/identificationLabel[@id=2],//stemobservation/stemtag[iscurrent=true]:[../stemtag?[2=true]/1=false]/tag, |
| 81 | 78 |
//relativePlotPosition/relativeX,//stemobservation/xposition, |
| 82 | 79 |
//relativePlotPosition/relativeY,//stemobservation/yposition, |
| 83 |
//individualOrganismObservation/simpleUserdefined[name=authorPlantCode]/value,"/*_id/plantobservation/{./authorplantcode,./{aggregateoccurrence/*_id/taxonoccurrence,_if:[cond/_eq:[left/_ref[addr=""../../../../_ignore/voucherType""],right=direct]]/{then/specimenreplicate,else/aggregateoccurrence/*_id/taxonoccurrence/voucher/*_id/specimenreplicate}/}/sourceaccessioncode/_alt/2}","""{./"" sorts it with other _ifs"
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| 84 |
//individualOrganismObservation/simpleUserdefined[name=sourceAccessionCode]/value,"/*_id/plantobservation/{./sourceaccessioncode,./{aggregateoccurrence/*_id/taxonoccurrence,_if:[cond/_eq:[left/_ref[addr=""../../../../_ignore/voucherType""],right=direct]]/{then/specimenreplicate,else/aggregateoccurrence/*_id/taxonoccurrence/voucher/*_id/specimenreplicate}/}/sourceaccessioncode/_alt/1}","""{./"" sorts it with other _ifs"
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| 85 | 80 |
//taxonNameUsageConcept/voucher,"/*_id/plantobservation/{.}/_if:[cond/_eq:[left/_ref[addr=""../../../../_ignore/voucherType""],right=direct]]/{then/specimenreplicate,else/aggregateoccurrence/*_id/taxonoccurrence/voucher/*_id/specimenreplicate}//catalognumber_dwc","""{.}"" sorts it with other _ifs"
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| 86 | 81 |
//individualOrganismObservation/simpleUserdefined[name=collectionDate]/value,"/*_id/plantobservation/{.}/_if:[cond/_eq:[left/_ref[addr=""../../../../_ignore/voucherType""],right=direct]]/{then/specimenreplicate,else/aggregateoccurrence/*_id/taxonoccurrence/voucher/*_id/specimenreplicate}//collectiondate","""{.}"" sorts it with other _ifs"
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//party/organizationName,"/*_id/plantobservation/{.}/_if:[cond/_eq:[left/_ref[addr=""../../../../_ignore/voucherType""],right=direct]]/{then/specimenreplicate,else/aggregateoccurrence/*_id/taxonoccurrence/voucher/*_id/specimenreplicate}//datasource_id/party/organizationname/_alt/1","""{.}"" sorts it with other _ifs"
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| 88 | 82 |
//*s/taxonDetermination[role=collector]/groupType,/*_id/plantobservation/{.}/_ignore/voucherType,"""{"" sorts it after what uses it, so the _ignore is executed after the _refs"
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//individualOrganismObservation/simpleUserdefined[name=authorPlantCode]/value,"/*_id/plantobservation/{authorplantcode,./{aggregateoccurrence/*_id/taxonoccurrence,_if:[cond/_eq:[left/_ref[addr=""../../../../_ignore/voucherType""],right=direct]]/{then/specimenreplicate,else/aggregateoccurrence/*_id/taxonoccurrence/voucher/*_id/specimenreplicate}/}/sourceaccessioncode/_alt/2}","""{"" sorts it with other _ifs"
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//individualOrganismObservation/simpleUserdefined[name=sourceAccessionCode]/value,"/*_id/plantobservation/{sourceaccessioncode,./{aggregateoccurrence/*_id/taxonoccurrence,_if:[cond/_eq:[left/_ref[addr=""../../../../_ignore/voucherType""],right=direct]]/{then/specimenreplicate,else/aggregateoccurrence/*_id/taxonoccurrence/voucher/*_id/specimenreplicate}/}/sourceaccessioncode/_alt/1}","""{"" sorts it with other _ifs"
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| 89 | 85 |
/diameterBaseDistance[value=0]/diameter,/basaldiameter, |
| 90 | 86 |
/simpleUserdefined[name=canopyForm]/value,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]/definedvalue", |
| 91 | 87 |
/simpleUserdefined[name=canopyPosition]/value,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]/definedvalue", |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv, VegX-VegBIEN.stems.csv: Removed all manual mappings to datasource_id now that datasource_id is auto-populated, both on the VegBIEN output side and the DwC/VegX input side. This should greatly simplify many of the mappings!