Revision 3780
Added by Aaron Marcuse-Kubitza over 12 years ago
| VegBIEN.specimens.csv | ||
|---|---|---|
| 1 | 1 |
MT[DwC],VegBIEN:,Comments,Order |
| 2 | 2 |
continent,"/specimenreplicate/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",Brad: OMIT,59 |
| 3 | 3 |
locality,/specimenreplicate/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68 |
| 4 |
id,/specimenreplicate/*_id/locationevent/*_id/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
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| 5 |
institutionCode,/specimenreplicate/*_id/locationevent/*_id/location/sourceaccessioncode/_alt/2/_merge/1,, |
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| 6 |
collectionCode,/specimenreplicate/*_id/locationevent/*_id/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
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| 7 |
collectionCode,/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
|
| 4 | 8 |
collectionID,/specimenreplicate/collectionnumber/_alt/2,,9 |
| 9 |
establishmentMeans,"/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value",,30
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| 10 |
institutionCode,/specimenreplicate/institution_id/party/organizationname,, |
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| 11 |
establishmentMeans,"/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value",,30 |
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| 12 |
establishmentMeans,"/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value",,30 |
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| 13 |
id,/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
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| 5 | 14 |
genus,"/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147 |
| 6 | 15 |
family,"/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146 |
| 7 |
collectionCode,"/specimenreplicate/{collectioncode_dwc,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/2/_merge/2}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
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| 8 |
establishmentMeans,"/specimenreplicate/{growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=],iscultivated/_map:[cultivated=t,wild=f,*=],isnative/_map:[native=t,exotic=f,*=]}/value",,30
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institutionCode,"/specimenreplicate/{institution_id/party/organizationname,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/2/_merge/1}",,
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id,"/specimenreplicate/{sourceaccessioncode,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/1}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
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| 11 | 16 |
basisOfRecord,,** No non-empty join mapping for basisOfRecord ** |
| 12 | 17 |
countryCode,,** No non-empty join mapping for countryCode ** |
| 13 | 18 |
datasetName,,** No non-empty join mapping for datasetName ** |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv: Expanded {} expressions using expand_braces, so that each distinct output for the same input is on its own line, improving readability. This will also help enable search-and-replace reversing of XPaths for the re-rooting to location.