Revision 3780
Added by Aaron Marcuse-Kubitza over 12 years ago
| VegBIEN.specimens.csv | ||
|---|---|---|
| 4 | 4 |
country,"/specimenreplicate/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,63 |
| 5 | 5 |
locality,/specimenreplicate/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68 |
| 6 | 6 |
habitat,"/specimenreplicate/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
| 7 |
collday,"/specimenreplicate/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
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| 8 |
collmonth,"/specimenreplicate/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
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collyear,"/specimenreplicate/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
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accession,/specimenreplicate/*_id/locationevent/*_id/location/sourceaccessioncode/_alt/1,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
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| 8 |
herbarium,/specimenreplicate/*_id/locationevent/*_id/location/sourceaccessioncode/_alt/2/_merge/2,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
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| 9 |
collday,"/specimenreplicate/*_id/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44 |
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| 10 |
collmonth,"/specimenreplicate/*_id/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44 |
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| 11 |
collyear,"/specimenreplicate/*_id/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44 |
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| 12 |
collday,"/specimenreplicate/*_id/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44 |
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| 13 |
collmonth,"/specimenreplicate/*_id/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44 |
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collyear,"/specimenreplicate/*_id/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44 |
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herbarium,/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
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| 10 | 16 |
collectno,/specimenreplicate/collectionnumber/_alt/1/_alt/1,,22 |
| 11 | 17 |
comment1,/specimenreplicate/description/_merge/1/_merge/1,, |
| 12 | 18 |
comment2,/specimenreplicate/description/_merge/1/_merge/2,, |
| ... | ... | |
| 15 | 21 |
campus,"/specimenreplicate/description/_merge/1/_merge/5/_label[label=""campus""]/value",, |
| 16 | 22 |
loanto,"/specimenreplicate/description/_merge/1/_merge/6/_label[label=""loaned to""]/value",, |
| 17 | 23 |
inorout,"/specimenreplicate/description/_merge/1/_merge/7/_label[label=""in or out""]/value",, |
| 24 |
cultivated,"/specimenreplicate/growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,30
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cultivated,"/specimenreplicate/iscultivated/_map:[cultivated=t,wild=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,30 |
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cultivated,"/specimenreplicate/isnative/_map:[native=t,exotic=f,*=]/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,30 |
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accession,/specimenreplicate/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
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| 18 | 28 |
SciName,"/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134 |
| 19 | 29 |
authors,"/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153 |
| 20 | 30 |
infraname,"/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150 |
| ... | ... | |
| 25 | 35 |
collector1,/specimenreplicate/verbatimcollectorname/_merge/2,,23 |
| 26 | 36 |
collector2,/specimenreplicate/verbatimcollectorname/_merge/3,,23 |
| 27 | 37 |
collector3,/specimenreplicate/verbatimcollectorname/_merge/4,,23 |
| 28 |
herbarium,"/specimenreplicate/{collectioncode_dwc,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/2/_merge/2}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
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cultivated,"/specimenreplicate/{growthform/_map:[./{tree,shrub,liana,vine,herb,hemiepiphyte,epiphyte,grass,forb,moss,lichen,fungus,""floating aquatic"",""submerged aquatic""}=*,*=],iscultivated/_map:[cultivated=t,wild=f,*=],isnative/_map:[native=t,exotic=f,*=]}/value/_map:[Y=cultivated,N=wild,*=]/value",Ignore other values,30
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accession,"/specimenreplicate/{sourceaccessioncode,*_id/locationevent/*_id/location/sourceaccessioncode/_alt/1}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
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| 31 | 38 |
filler,,"Where used, same as family" |
| 32 | 39 |
flower,,"** No non-empty join mapping for reproductiveCondition/_map:[A=*,I=*,M=*]/value ** Main values are A, I, and M. What do they mean?" |
| 33 | 40 |
fruit,,"** No non-empty join mapping for reproductiveCondition/_map:[A=*,I=*,M=*]/value ** Main values are A, I, and M. What do they mean?" |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv: Expanded {} expressions using expand_braces, so that each distinct output for the same input is on its own line, improving readability. This will also help enable search-and-replace reversing of XPaths for the re-rooting to location.