Revision 3907
Added by Aaron Marcuse-Kubitza over 12 years ago
| VegBIEN.specimens.csv | ||
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| 18 | 18 |
DayCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/DayCollected; http://rs.tdwg.org/dwc/terms/#eventDate,11; 44 |
| 19 | 19 |
MonthCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/MonthCollected; http://rs.tdwg.org/dwc/terms/#eventDate,10; 44 |
| 20 | 20 |
YearCollected,"/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/YearCollected; http://rs.tdwg.org/dwc/terms/#eventDate,9; 44 |
| 21 |
CatalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,,http://rs.tdwg.org/dwc/terms/#catalogNumber,20 |
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CollectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/#collectionCode,12 |
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CollectorNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/1/_alt/1,,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/CollectorNumber; http://rs.tdwg.org/dwc/terms/#recordNumber,7; 22 |
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FieldNumber,/location/locationevent/specimenreplicate/collectionnumber/_alt/3,,http://rs.tdwg.org/dwc/terms/#fieldNumber,53 |
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Sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",http://rs.tdwg.org/dwc/terms/#sex,26 |
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Notes,/location/locationevent/specimenreplicate/description/_merge/1/_merge/1,,http://digir.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd#/Notes; http://rs.tdwg.org/dwc/terms/#fieldNotes,47; 54 |
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PlantFungusDescription,"/location/locationevent/specimenreplicate/description/_merge/1/_merge/2/_label[label=""plant fungus""]/value",,http://digir.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd#/Notes; http://rs.tdwg.org/dwc/terms/#fieldNotes,47; 54 |
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| 28 |
InstitutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,http://rs.tdwg.org/dwc/terms/#institutionCode,11 |
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| 29 |
UniqueNYInternalRecordNumber,/location/locationevent/specimenreplicate/sourceaccessioncode,,http://rs.tdwg.org/dwc/terms/#occurrenceID,19 |
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DayIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/DayIdentified; http://rs.tdwg.org/dwc/terms/#dateIdentified,55; 120
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MonthIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/MonthIdentified; http://rs.tdwg.org/dwc/terms/#dateIdentified,54; 120
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YearIdentified,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/YearIdentified; http://rs.tdwg.org/dwc/terms/#dateIdentified,53; 120
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IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,,http://rs.tdwg.org/dwc/terms/#identifiedBy,119
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IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,,http://rs.tdwg.org/dwc/terms/#identifiedBy,119
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IdentifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,,http://rs.tdwg.org/dwc/terms/#identifiedBy,119
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ScientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",,http://rs.tdwg.org/dwc/terms/#scientificName,134
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ScientificNameAuthor,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/ScientificNameAuthor; http://rs.tdwg.org/dwc/terms/#scientificNameAuthorship,50; 153
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Subspecies,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/Subspecies; http://rs.tdwg.org/dwc/terms/#infraspecificEpithet,49; 150
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Species,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,http://digir.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd#/Species; http://rs.tdwg.org/dwc/terms/#specificEpithet,12; 149
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Genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/#genus,147
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Family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/#family,146
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Order,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,http://rs.tdwg.org/dwc/terms/#order,145
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Class,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,http://rs.tdwg.org/dwc/terms/#class,144
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Phylum,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,http://rs.tdwg.org/dwc/terms/#phylum,143
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Kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,http://rs.tdwg.org/dwc/terms/#kingdom,142
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Collector,/location/locationevent/specimenreplicate/verbatimcollectorname,,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/Collector; http://rs.tdwg.org/dwc/terms/#recordedBy,6; 23
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CatalogNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc,,http://rs.tdwg.org/dwc/terms/#catalogNumber,20
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CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/#collectionCode,12
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CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/1/_alt/1,,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/CollectorNumber; http://rs.tdwg.org/dwc/terms/#recordNumber,7; 22
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FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/3,,http://rs.tdwg.org/dwc/terms/#fieldNumber,53
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Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",http://rs.tdwg.org/dwc/terms/#sex,26
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Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/description/_merge/1/_merge/1,,http://digir.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd#/Notes; http://rs.tdwg.org/dwc/terms/#fieldNotes,47; 54
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PlantFungusDescription,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/description/_merge/1/_merge/2/_label[label=""plant fungus""]/value",,http://digir.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd#/Notes; http://rs.tdwg.org/dwc/terms/#fieldNotes,47; 54
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InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,,http://rs.tdwg.org/dwc/terms/#institutionCode,11
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UniqueNYInternalRecordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,,http://rs.tdwg.org/dwc/terms/#occurrenceID,19
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Collector,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/verbatimcollectorname,,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/Collector; http://rs.tdwg.org/dwc/terms/#recordedBy,6; 23
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DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/DayIdentified; http://rs.tdwg.org/dwc/terms/#dateIdentified,55; 120
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MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/MonthIdentified; http://rs.tdwg.org/dwc/terms/#dateIdentified,54; 120
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YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/YearIdentified; http://rs.tdwg.org/dwc/terms/#dateIdentified,53; 120
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IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,,http://rs.tdwg.org/dwc/terms/#identifiedBy,119
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IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,,http://rs.tdwg.org/dwc/terms/#identifiedBy,119
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IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,,http://rs.tdwg.org/dwc/terms/#identifiedBy,119
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ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",,http://rs.tdwg.org/dwc/terms/#scientificName,134
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ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/ScientificNameAuthor; http://rs.tdwg.org/dwc/terms/#scientificNameAuthorship,50; 153
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Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,http://digir.net/schema/conceptual/darwin/manis/1.21/darwin2.xsd#/Subspecies; http://rs.tdwg.org/dwc/terms/#infraspecificEpithet,49; 150
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Species,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,http://digir.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd#/Species; http://rs.tdwg.org/dwc/terms/#specificEpithet,12; 149
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Genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/#genus,147
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Family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/#family,146
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Order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,http://rs.tdwg.org/dwc/terms/#order,145
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Class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,http://rs.tdwg.org/dwc/terms/#class,144
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Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,http://rs.tdwg.org/dwc/terms/#phylum,143
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Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,http://rs.tdwg.org/dwc/terms/#kingdom,142
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| 47 | 47 |
MaximumDepth,"/location/locationevent/waterdepth/_avg/max/_units:[default=m,to=m,to=]/value",,http://digir.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd#/MaximumDepth; http://rs.tdwg.org/dwc/terms/#maximumDepthInMeters,40; 75 |
| 48 | 48 |
MinimumDepth,"/location/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,http://digir.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd#/MinimumDepth; http://rs.tdwg.org/dwc/terms/#minimumDepthInMeters,39; 74 |
| 49 | 49 |
Locality,/location/locationnarrative/_merge/1/_merge/1,,http://rs.tdwg.org/dwc/terms/#locality,68 |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv: Mapped specimenreplicate via plantobservation for consistency with plots data. (This change is required for VegCSV table merging to work properly.) This is also a more accurate way of representing the data, because a specimen in fact comes from a plant, and it's natural to place the plant-related data (measurements, etc.) in the plantobservation table.