Revision 3907
Added by Aaron Marcuse-Kubitza over 12 years ago
| VegBIEN.specimens.csv | ||
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| 16 | 16 |
continent,"/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,country,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=continent]/placename",,http://rs.tdwg.org/dwc/terms/#continent,59 |
| 17 | 17 |
eventDate,/location/locationevent/obsenddate/_*/date/_dateRangeEnd/value/_alt/2,,http://rs.tdwg.org/dwc/terms/#eventDate,44 |
| 18 | 18 |
eventDate,/location/locationevent/obsstartdate/_*/date/_dateRangeStart/value/_alt/2,,http://rs.tdwg.org/dwc/terms/#eventDate,44 |
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catalogNumber,/location/locationevent/specimenreplicate/catalognumber_dwc,,http://rs.tdwg.org/dwc/terms/#catalogNumber,20 |
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collectionCode,/location/locationevent/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/#collectionCode,12 |
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collectionID,/location/locationevent/specimenreplicate/collectionnumber/_alt/2,,http://rs.tdwg.org/dwc/terms/#collectionID,9 |
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sex,"/location/locationevent/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",http://rs.tdwg.org/dwc/terms/#sex,26 |
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institutionCode,/location/locationevent/specimenreplicate/institution_id/party/organizationname,,http://rs.tdwg.org/dwc/terms/#institutionCode,11 |
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id,/location/locationevent/specimenreplicate/sourceaccessioncode,,"ACAD#id, MT#id, QMOR#id, U#ID; http://rs.tdwg.org/dwc/terms/#occurrenceID",19 |
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dateIdentified,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,http://rs.tdwg.org/dwc/terms/#dateIdentified,120
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identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,,http://rs.tdwg.org/dwc/terms/#identifiedBy,119
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identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,,http://rs.tdwg.org/dwc/terms/#identifiedBy,119
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identifiedBy,/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,,http://rs.tdwg.org/dwc/terms/#identifiedBy,119
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scientificName,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",,http://rs.tdwg.org/dwc/terms/#scientificName,134
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scientificNameAuthorship,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",,http://rs.tdwg.org/dwc/terms/#scientificNameAuthorship,153
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infraspecificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,http://rs.tdwg.org/dwc/terms/#infraspecificEpithet,150
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specificEpithet,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,http://rs.tdwg.org/dwc/terms/#specificEpithet,149
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genus,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/#genus,147
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family,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/#family,146
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order,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,http://rs.tdwg.org/dwc/terms/#order,145
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class,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,http://rs.tdwg.org/dwc/terms/#class,144
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phylum,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,http://rs.tdwg.org/dwc/terms/#phylum,143
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kingdom,"/location/locationevent/specimenreplicate/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,http://rs.tdwg.org/dwc/terms/#kingdom,142
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recordedBy,/location/locationevent/specimenreplicate/verbatimcollectorname,,http://rs.tdwg.org/dwc/terms/#recordedBy,23
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catalogNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc,,http://rs.tdwg.org/dwc/terms/#catalogNumber,20
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collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,http://rs.tdwg.org/dwc/terms/#collectionCode,12
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collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_alt/2,,http://rs.tdwg.org/dwc/terms/#collectionID,9
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sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",http://rs.tdwg.org/dwc/terms/#sex,26
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institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,,http://rs.tdwg.org/dwc/terms/#institutionCode,11
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id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,,"ACAD#id, MT#id, QMOR#id, U#ID; http://rs.tdwg.org/dwc/terms/#occurrenceID",19
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recordedBy,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/verbatimcollectorname,,http://rs.tdwg.org/dwc/terms/#recordedBy,23
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dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,http://rs.tdwg.org/dwc/terms/#dateIdentified,120
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identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/givenname/_namePart/first,,http://rs.tdwg.org/dwc/terms/#identifiedBy,119
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identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/middlename/_namePart/middle,,http://rs.tdwg.org/dwc/terms/#identifiedBy,119
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identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/surname/_namePart/last,,http://rs.tdwg.org/dwc/terms/#identifiedBy,119
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scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname",,http://rs.tdwg.org/dwc/terms/#scientificName,134
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scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname",,http://rs.tdwg.org/dwc/terms/#scientificNameAuthorship,153
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infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,http://rs.tdwg.org/dwc/terms/#infraspecificEpithet,150
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specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,http://rs.tdwg.org/dwc/terms/#specificEpithet,149
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genus,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,http://rs.tdwg.org/dwc/terms/#genus,147
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family,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,http://rs.tdwg.org/dwc/terms/#family,146
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order,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,http://rs.tdwg.org/dwc/terms/#order,145
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class,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,http://rs.tdwg.org/dwc/terms/#class,144
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phylum,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,http://rs.tdwg.org/dwc/terms/#phylum,143
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kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,http://rs.tdwg.org/dwc/terms/#kingdom,142
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| 40 | 40 |
locality,/location/locationnarrative/_merge/1,,http://rs.tdwg.org/dwc/terms/#locality,68 |
| 41 | 41 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",http://rs.tdwg.org/dwc/terms/#habitat,52 |
| 42 | 42 |
id,/location/sourceaccessioncode/_alt/1,,"ACAD#id, MT#id, QMOR#id, U#ID; http://rs.tdwg.org/dwc/terms/#occurrenceID",19 |
Also available in: Unified diff
mappings/DwC2-VegBIEN.specimens.csv: Mapped specimenreplicate via plantobservation for consistency with plots data. (This change is required for VegCSV table merging to work properly.) This is also a more accurate way of representing the data, because a specimen in fact comes from a plant, and it's natural to place the plant-related data (measurements, etc.) in the plantobservation table.